Wall clock time and date at job start Mon Mar 30 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.24642 * 2 1 4 4 C 1.50632 * 109.35509 * 240.71012 * 2 1 3 5 5 C 1.38920 * 117.74584 * 41.76206 * 4 2 1 6 6 C 1.37912 * 120.56379 * 179.60244 * 5 4 2 7 7 C 1.38384 * 119.75765 * 0.29351 * 6 5 4 8 8 Cl 1.73598 * 120.12878 * 180.16193 * 7 6 5 9 9 C 1.38045 * 119.74361 * 0.14198 * 7 6 5 10 10 C 1.37674 * 122.55349 * 222.16506 * 4 2 1 11 11 C 1.50640 * 122.56161 * 0.35510 * 10 4 2 12 12 C 1.52720 * 110.59602 * 342.40844 * 11 10 4 13 13 C 1.52729 * 109.25228 * 119.47080 * 2 1 3 14 14 H 1.08998 * 109.71584 * 51.65160 * 13 2 1 15 15 C 1.50697 * 109.68144 * 291.11540 * 13 2 1 16 16 H 1.08003 * 120.00199 * 1.07349 * 15 13 2 17 17 C 1.37874 * 120.00090 * 181.07126 * 15 13 2 18 18 N 1.31514 * 120.00161 * 180.02562 * 17 15 13 19 19 Si 1.86805 * 120.00083 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.47226 * 89.99597 * 19 17 15 21 21 H 1.48496 * 109.47106 * 209.99904 * 19 17 15 22 22 H 1.48504 * 109.46848 * 329.99631 * 19 17 15 23 23 H 1.09000 * 109.47154 * 300.52736 * 1 2 3 24 24 H 1.08996 * 109.46947 * 60.52890 * 1 2 3 25 25 H 1.09000 * 109.46895 * 180.53002 * 1 2 3 26 26 H 1.08002 * 119.72074 * 359.88538 * 5 4 2 27 27 H 1.07997 * 120.12342 * 180.31974 * 6 5 4 28 28 H 1.08001 * 119.73408 * 179.97438 * 9 7 6 29 29 H 1.09005 * 109.24818 * 102.69973 * 11 10 4 30 30 H 1.09002 * 109.25371 * 222.11602 * 11 10 4 31 31 H 1.08998 * 109.67977 * 170.82031 * 12 11 10 32 32 H 1.08993 * 109.68134 * 291.33560 * 12 11 10 33 33 H 0.97003 * 119.99738 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0293 -0.6953 -1.2395 5 6 1.3784 -0.4283 -2.4374 6 6 1.7924 -1.0267 -3.6090 7 6 2.8613 -1.9053 -3.5910 8 17 3.3931 -2.6606 -5.0608 9 6 3.5034 -2.1784 -2.3999 10 6 3.0863 -1.5771 -1.2194 11 6 3.8269 -1.9263 0.0451 12 6 3.5513 -0.8902 1.1327 13 6 2.0337 -0.7094 1.2553 14 1 1.5539 -1.6840 1.3444 15 6 1.7184 0.1244 2.4704 16 1 1.1926 1.0614 2.3609 17 6 2.1013 -0.3090 3.7220 18 7 1.8257 0.4184 4.7825 19 14 3.0114 -1.9293 3.9116 20 1 4.4739 -1.6892 3.8199 21 1 2.6895 -2.5262 5.2327 22 1 2.5940 -2.8605 2.8328 23 1 -0.3633 0.5220 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3633 -1.0276 0.0095 26 1 0.5439 0.2572 -2.4521 27 1 1.2844 -0.8100 -4.5371 28 1 4.3375 -2.8645 -2.3861 29 1 3.5022 -2.9072 0.3925 30 1 4.8968 -1.9550 -0.1612 31 1 3.9574 -1.2380 2.0825 32 1 4.0138 0.0587 0.8613 33 1 2.0954 0.1136 5.6631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260704110.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:01 Heat of formation + Delta-G solvation = -1.790564 kcal Electronic energy + Delta-G solvation = -16178.248974 eV Core-core repulsion = 13614.618728 eV Total energy + Delta-G solvation = -2563.630246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.94005 -36.91970 -35.70628 -33.28029 -32.39887 -29.93179 -29.32306 -26.55953 -24.37048 -22.81787 -21.43454 -20.84749 -18.68193 -17.05344 -16.41229 -15.58098 -14.93913 -14.48874 -13.98455 -13.68853 -13.37070 -13.24943 -12.76250 -12.65666 -12.15114 -11.96229 -11.61083 -11.51006 -11.45353 -10.93971 -10.79338 -10.74783 -10.45105 -10.21276 -9.97388 -9.80673 -9.13306 -8.94328 -8.62327 -8.54601 -8.16023 -6.09617 -4.08554 1.39304 1.47198 2.21994 3.23643 3.35754 3.37520 3.82030 4.38348 4.89910 5.01624 5.17724 5.21217 5.42583 5.48517 5.62472 5.67648 5.83355 5.97903 6.00376 6.11738 6.21228 6.29063 6.34953 6.44292 6.52416 6.64231 6.67023 6.77699 6.90615 7.05692 7.12602 7.14351 7.49666 7.74205 8.48793 8.93940 9.52928 11.03330 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.037660 B = 0.006355 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.313013 B = 4405.050251 C = 4995.650140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 H 0.081 0.919 4 C -0.050 4.050 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.044 4.044 8 Cl -0.088 7.088 9 C -0.116 4.116 10 C -0.056 4.056 11 C -0.087 4.087 12 C -0.124 4.124 13 C 0.022 3.978 14 H 0.031 0.969 15 C -0.509 4.509 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.264 1.264 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -4.430 -14.956 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 H 0.099 0.901 4 C -0.050 4.050 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.071 4.071 8 Cl -0.059 7.059 9 C -0.135 4.135 10 C -0.057 4.057 11 C -0.124 4.124 12 C -0.161 4.161 13 C 0.003 3.997 14 H 0.049 0.951 15 C -0.547 4.547 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.713 3.287 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.189 1.189 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.850 -4.485 -14.893 15.663 hybrid contribution 0.678 -0.977 0.021 1.189 sum 2.528 -5.462 -14.872 16.044 Atomic orbital electron populations 1.21805 0.94756 1.01378 1.01181 1.20067 0.95574 0.99081 0.91186 0.90118 1.20205 0.93725 0.95158 0.95934 1.21257 1.00192 1.00139 0.91402 1.20886 0.96473 0.97513 0.99002 1.20713 0.99072 1.00204 0.87082 1.98335 1.90104 1.81430 1.36075 1.21034 1.00615 1.01086 0.90715 1.19700 0.95764 0.95725 0.94463 1.20627 0.98371 1.00574 0.92794 1.22024 1.00660 0.97457 0.95986 1.19198 0.90675 0.96714 0.93139 0.95136 1.20999 1.37361 1.07278 0.89069 0.90589 1.25002 0.95567 0.96654 0.95935 1.69893 1.47243 1.38175 0.98589 0.86917 0.79968 0.84974 0.76843 1.20561 1.22558 1.18876 0.90951 0.94143 0.93382 0.85059 0.85577 0.85601 0.90968 0.91570 0.92579 0.91934 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.57 37.16 0.32 -1.99 16 2 C -0.04 -0.77 2.17 -91.94 -0.20 -0.97 16 3 H 0.08 1.56 8.11 -51.93 -0.42 1.13 16 4 C -0.05 -0.84 5.44 -104.61 -0.57 -1.41 16 5 C -0.11 -1.61 9.04 -39.45 -0.36 -1.97 16 6 C -0.12 -1.61 9.84 -39.65 -0.39 -2.00 16 7 C -0.04 -0.62 6.31 -39.60 -0.25 -0.87 16 8 Cl -0.09 -1.09 28.96 -51.86 -1.50 -2.59 16 9 C -0.12 -1.70 9.39 -39.41 -0.37 -2.07 16 10 C -0.06 -0.93 5.74 -104.61 -0.60 -1.53 16 11 C -0.09 -1.49 5.67 -28.06 -0.16 -1.65 16 12 C -0.12 -2.54 4.73 -26.70 -0.13 -2.67 16 13 C 0.02 0.48 1.12 -91.74 -0.10 0.37 16 14 H 0.03 0.71 7.19 -51.93 -0.37 0.34 16 15 C -0.51 -13.48 8.48 -34.44 -0.29 -13.77 16 16 H 0.08 2.16 7.54 -52.48 -0.40 1.77 16 17 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 18 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 19 Si 0.88 21.26 24.44 -169.99 -4.15 17.10 16 20 H -0.28 -6.52 6.80 56.52 0.38 -6.14 16 21 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.06 6.55 56.52 0.37 -5.69 16 23 H 0.07 1.37 7.20 -51.93 -0.37 0.99 16 24 H 0.04 0.57 6.35 -51.93 -0.33 0.24 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.13 1.65 6.31 -52.49 -0.33 1.32 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.64 8.05 -52.49 -0.42 1.21 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.06 1.23 3.29 -51.93 -0.17 1.06 16 32 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 272.67 15.07 4.11 4.11 Total: -1.00 -28.00 272.67 -8.08 -36.08 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.11 Total: 0.02 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.19 Total: -28.68 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.77 Total: -26.05 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.15 Total: 17.10 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.00 -8.08 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704110.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.292 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds