Wall clock time and date at job start Mon Mar 30 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.24642 * 2 1 4 4 C 1.50632 * 109.35509 * 240.71012 * 2 1 3 5 5 C 1.38920 * 117.74584 * 41.76206 * 4 2 1 6 6 C 1.37912 * 120.56379 * 179.60244 * 5 4 2 7 7 C 1.38384 * 119.75765 * 0.29351 * 6 5 4 8 8 Cl 1.73598 * 120.12878 * 180.16193 * 7 6 5 9 9 C 1.38045 * 119.74361 * 0.14198 * 7 6 5 10 10 C 1.37674 * 122.55349 * 222.16506 * 4 2 1 11 11 C 1.50640 * 122.56161 * 0.35510 * 10 4 2 12 12 C 1.52720 * 110.59602 * 342.40844 * 11 10 4 13 13 C 1.52729 * 109.25228 * 119.47080 * 2 1 3 14 14 H 1.08998 * 109.71584 * 51.65160 * 13 2 1 15 15 C 1.50697 * 109.68144 * 291.11540 * 13 2 1 16 16 H 1.08003 * 120.00199 * 1.07349 * 15 13 2 17 17 C 1.37874 * 120.00090 * 181.07126 * 15 13 2 18 18 N 1.31514 * 120.00161 * 180.02562 * 17 15 13 19 19 Si 1.86805 * 120.00083 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.47226 * 89.99597 * 19 17 15 21 21 H 1.48496 * 109.47106 * 209.99904 * 19 17 15 22 22 H 1.48504 * 109.46848 * 329.99631 * 19 17 15 23 23 H 1.09000 * 109.47154 * 300.52736 * 1 2 3 24 24 H 1.08996 * 109.46947 * 60.52890 * 1 2 3 25 25 H 1.09000 * 109.46895 * 180.53002 * 1 2 3 26 26 H 1.08002 * 119.72074 * 359.88538 * 5 4 2 27 27 H 1.07997 * 120.12342 * 180.31974 * 6 5 4 28 28 H 1.08001 * 119.73408 * 179.97438 * 9 7 6 29 29 H 1.09005 * 109.24818 * 102.69973 * 11 10 4 30 30 H 1.09002 * 109.25371 * 222.11602 * 11 10 4 31 31 H 1.08998 * 109.67977 * 170.82031 * 12 11 10 32 32 H 1.08993 * 109.68134 * 291.33560 * 12 11 10 33 33 H 0.97003 * 119.99738 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0293 -0.6953 -1.2395 5 6 1.3784 -0.4283 -2.4374 6 6 1.7924 -1.0267 -3.6090 7 6 2.8613 -1.9053 -3.5910 8 17 3.3931 -2.6606 -5.0608 9 6 3.5034 -2.1784 -2.3999 10 6 3.0863 -1.5771 -1.2194 11 6 3.8269 -1.9263 0.0451 12 6 3.5513 -0.8902 1.1327 13 6 2.0337 -0.7094 1.2553 14 1 1.5539 -1.6840 1.3444 15 6 1.7184 0.1244 2.4704 16 1 1.1926 1.0614 2.3609 17 6 2.1013 -0.3090 3.7220 18 7 1.8257 0.4184 4.7825 19 14 3.0114 -1.9293 3.9116 20 1 4.4739 -1.6892 3.8199 21 1 2.6895 -2.5262 5.2327 22 1 2.5940 -2.8605 2.8328 23 1 -0.3633 0.5220 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3633 -1.0276 0.0095 26 1 0.5439 0.2572 -2.4521 27 1 1.2844 -0.8100 -4.5371 28 1 4.3375 -2.8645 -2.3861 29 1 3.5022 -2.9072 0.3925 30 1 4.8968 -1.9550 -0.1612 31 1 3.9574 -1.2380 2.0825 32 1 4.0138 0.0587 0.8613 33 1 2.0954 0.1136 5.6631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260704110.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:00 Heat of formation + Delta-G solvation = -16.103736 kcal Electronic energy + Delta-G solvation = -16178.869640 eV Core-core repulsion = 13614.618728 eV Total energy + Delta-G solvation = -2564.250911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20178 -38.14740 -36.96329 -34.60323 -34.37810 -31.41752 -30.56564 -28.12988 -26.00520 -24.10979 -22.94994 -22.18303 -20.17825 -18.98570 -17.58694 -17.06565 -16.30897 -16.05969 -15.31244 -15.17726 -14.79052 -14.52683 -14.50929 -13.93283 -13.70562 -13.43967 -13.00770 -12.91135 -12.65690 -12.56899 -12.30037 -12.02924 -11.85837 -11.74155 -11.61269 -11.57224 -10.89232 -10.77266 -10.55764 -9.73033 -9.34667 -8.25637 -6.27738 0.24808 0.36160 1.17958 1.30819 1.37479 1.47219 2.35112 2.67682 3.09712 3.70552 3.85379 3.98506 4.16532 4.22227 4.26562 4.34636 4.52353 4.61516 4.67261 4.74252 4.90459 4.98037 5.04354 5.06163 5.17115 5.20831 5.27404 5.34093 5.42708 5.54292 5.70297 5.77510 5.83275 5.93706 6.36042 6.78913 7.37144 8.90771 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.037660 B = 0.006355 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.313013 B = 4405.050251 C = 4995.650140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.037 4.037 3 H 0.067 0.933 4 C -0.070 4.070 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.046 4.046 8 Cl -0.071 7.071 9 C -0.115 4.115 10 C -0.072 4.072 11 C -0.082 4.082 12 C -0.124 4.124 13 C 0.021 3.979 14 H 0.022 0.978 15 C -0.505 4.505 16 H 0.039 0.961 17 C 0.011 3.989 18 N -0.952 5.952 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.304 1.304 22 H -0.245 1.245 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -6.078 -17.898 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 H 0.085 0.915 4 C -0.070 4.070 5 C -0.127 4.127 6 C -0.132 4.132 7 C -0.073 4.073 8 Cl -0.042 7.042 9 C -0.134 4.134 10 C -0.072 4.072 11 C -0.118 4.118 12 C -0.161 4.161 13 C 0.002 3.998 14 H 0.040 0.960 15 C -0.543 4.543 16 H 0.057 0.943 17 C -0.185 4.185 18 N -0.593 5.593 19 Si 0.769 3.231 20 H -0.192 1.192 21 H -0.232 1.232 22 H -0.168 1.168 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.612 -6.137 -17.868 19.072 hybrid contribution 0.392 -0.389 0.834 1.000 sum 3.003 -6.526 -17.034 18.487 Atomic orbital electron populations 1.21751 0.93935 1.01454 1.01505 1.19882 0.96371 0.98229 0.91044 0.91527 1.20031 0.94972 0.96344 0.95632 1.21392 1.00297 1.00238 0.90803 1.21176 0.96010 0.96429 0.99586 1.20873 0.98903 0.99933 0.87585 1.98347 1.89932 1.81090 1.34873 1.21136 1.01020 1.00988 0.90207 1.19685 0.96067 0.96598 0.94880 1.20556 1.00218 0.99146 0.91910 1.21901 0.98771 0.98657 0.96791 1.19130 0.92304 0.95556 0.92832 0.96000 1.21314 1.35677 1.06290 0.91031 0.94255 1.25822 0.96804 1.00266 0.95642 1.70047 1.49557 1.40473 0.99180 0.85954 0.79330 0.81016 0.76838 1.19197 1.23185 1.16826 0.93785 0.90727 0.93266 0.83354 0.82925 0.83886 0.90737 0.89024 0.94012 0.92290 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.57 71.98 0.62 -3.80 16 2 C -0.04 -1.38 2.17 -11.65 -0.03 -1.41 16 3 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 4 C -0.07 -2.20 5.44 -19.86 -0.11 -2.31 16 5 C -0.11 -2.81 9.04 22.36 0.20 -2.61 16 6 C -0.11 -2.59 9.84 22.23 0.22 -2.37 16 7 C -0.05 -1.12 6.31 22.26 0.14 -0.98 16 8 Cl -0.07 -1.49 28.96 -2.72 -0.08 -1.57 16 9 C -0.11 -2.97 9.39 22.38 0.21 -2.76 16 10 C -0.07 -2.20 5.74 -19.86 -0.11 -2.31 16 11 C -0.08 -2.59 5.67 29.74 0.17 -2.43 16 12 C -0.12 -4.97 4.73 30.61 0.14 -4.82 16 13 C 0.02 0.91 1.12 -11.52 -0.01 0.90 16 14 H 0.02 1.01 7.19 -2.39 -0.02 0.99 16 15 C -0.51 -27.78 8.48 25.60 0.22 -27.56 16 16 H 0.04 2.38 7.54 -2.91 -0.02 2.36 16 17 C 0.01 0.63 5.45 84.65 0.46 1.10 16 18 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 19 Si 0.94 44.29 24.44 68.60 1.68 45.96 16 20 H -0.27 -11.87 6.80 99.48 0.68 -11.19 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.24 -10.62 6.55 99.48 0.65 -9.96 16 23 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 24 H 0.07 1.99 6.35 -2.39 -0.02 1.98 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.15 3.21 6.31 -2.91 -0.02 3.19 16 27 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.14 3.14 8.05 -2.91 -0.02 3.12 16 29 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 31 H 0.04 1.78 3.29 -2.39 -0.01 1.77 16 32 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -61.99 272.67 5.04 -56.95 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.02 Total: 8.75 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 2.12 Total: -51.37 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.30 Total: -58.73 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.68 Total: 45.96 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -61.99 5.04 -56.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704110.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.851 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds