Wall clock time and date at job start Mon Mar 30 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.25324 * 2 1 4 4 C 1.50635 * 109.25596 * 119.47958 * 2 1 3 5 5 C 1.38917 * 117.73986 * 282.43500 * 4 2 1 6 6 C 1.37912 * 120.56302 * 179.40297 * 5 4 2 7 7 C 1.38382 * 119.75299 * 0.02562 * 6 5 4 8 8 Cl 1.73597 * 120.12326 * 180.12290 * 7 6 5 9 9 C 1.38043 * 119.74706 * 0.13917 * 7 6 5 10 10 C 1.37675 * 122.54992 * 102.12276 * 4 2 1 11 11 C 1.50631 * 122.55885 * 1.13510 * 10 4 2 12 12 C 1.52725 * 110.60172 * 342.01620 * 11 10 4 13 13 C 1.52732 * 109.22325 * 240.54780 * 2 1 3 14 14 H 1.09001 * 109.68272 * 171.19177 * 13 2 1 15 15 C 1.50705 * 109.68289 * 50.67745 * 13 2 1 16 16 H 1.08001 * 119.99574 * 0.02562 * 15 13 2 17 17 C 1.37881 * 120.00097 * 179.97438 * 15 13 2 18 18 N 1.31519 * 120.00084 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99950 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46817 * 90.00127 * 19 17 15 21 21 H 1.48498 * 109.46960 * 210.00370 * 19 17 15 22 22 H 1.48499 * 109.47081 * 330.00391 * 19 17 15 23 23 H 1.08999 * 109.47005 * 300.51961 * 1 2 3 24 24 H 1.09003 * 109.47458 * 60.52543 * 1 2 3 25 25 H 1.09002 * 109.47387 * 180.51870 * 1 2 3 26 26 H 1.08000 * 119.71565 * 359.42440 * 5 4 2 27 27 H 1.07994 * 120.12040 * 180.02562 * 6 5 4 28 28 H 1.08009 * 119.73077 * 180.02562 * 9 7 6 29 29 H 1.08996 * 109.25009 * 102.30974 * 11 10 4 30 30 H 1.08997 * 109.24937 * 221.72998 * 11 10 4 31 31 H 1.08997 * 109.67945 * 291.35707 * 12 11 10 32 32 H 1.09000 * 109.67705 * 170.82198 * 12 11 10 33 33 H 0.96989 * 119.99774 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0291 0.0000 4 6 2.0268 -0.6998 1.2380 5 6 1.9901 0.0020 2.4362 6 6 2.4191 -0.5868 3.6072 7 6 2.8908 -1.8876 3.5891 8 17 3.4302 -2.6392 5.0580 9 6 2.9310 -2.5851 2.3985 10 6 2.5011 -1.9921 1.2184 11 6 2.5862 -2.8054 -0.0467 12 6 1.7009 -2.2010 -1.1346 13 6 2.0329 -0.7091 -1.2558 14 1 3.1114 -0.5785 -1.3441 15 6 1.3509 -0.1345 -2.4707 16 1 0.6284 0.6605 -2.3589 17 6 1.6502 -0.6229 -3.7249 18 7 2.5304 -1.5906 -3.8610 19 14 0.8044 0.0889 -5.2306 20 1 1.6023 1.2261 -5.7552 21 1 0.6900 -0.9596 -6.2760 22 1 -0.5515 0.5659 -4.8576 23 1 -0.3633 0.5219 0.8853 24 1 -0.3634 0.5056 -0.8947 25 1 -0.3634 -1.0276 0.0093 26 1 1.6221 1.0173 2.4509 27 1 2.3870 -0.0347 4.5348 28 1 3.2988 -3.6005 2.3848 29 1 3.6194 -2.8239 -0.3932 30 1 2.2583 -3.8244 0.1585 31 1 0.6521 -2.3228 -0.8640 32 1 1.8954 -2.6987 -2.0846 33 1 2.7406 -1.9344 -4.7432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260704113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:04 Heat of formation + Delta-G solvation = -7.666395 kcal Electronic energy + Delta-G solvation = -16134.195114 eV Core-core repulsion = 13570.310073 eV Total energy + Delta-G solvation = -2563.885041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74866 -36.80110 -35.60858 -32.73066 -32.39773 -29.38413 -29.08719 -26.24310 -24.35785 -22.50928 -21.54017 -21.24887 -18.00113 -16.45095 -16.08100 -15.37433 -14.71263 -14.36739 -14.12356 -13.47794 -13.29650 -12.75665 -12.66867 -12.49446 -12.11367 -11.76702 -11.44870 -11.10958 -10.97220 -10.80017 -10.68483 -10.54359 -10.45707 -10.41693 -9.87139 -9.50103 -9.04181 -8.69484 -8.47294 -8.31189 -8.01730 -6.01192 -4.06652 1.52959 1.62167 2.33005 3.28859 3.36327 3.38552 3.96904 4.41517 5.08114 5.16022 5.29027 5.37146 5.62202 5.66082 5.84930 5.99725 6.06704 6.22176 6.24716 6.32357 6.40272 6.49059 6.61320 6.69788 6.76039 6.89321 7.03372 7.09491 7.22023 7.25356 7.47816 7.71747 7.95288 8.07611 8.42341 8.96119 9.57802 11.05054 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.048640 B = 0.005496 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.525020 B = 5093.092088 C = 5495.126959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 H 0.066 0.934 4 C -0.048 4.048 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.045 4.045 8 Cl -0.091 7.091 9 C -0.119 4.119 10 C -0.051 4.051 11 C -0.083 4.083 12 C -0.113 4.113 13 C 0.055 3.945 14 H 0.028 0.972 15 C -0.510 4.510 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.029 0.971 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -0.587 11.864 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 H 0.084 0.916 4 C -0.049 4.049 5 C -0.131 4.131 6 C -0.143 4.143 7 C -0.071 4.071 8 Cl -0.062 7.062 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.120 4.120 12 C -0.151 4.151 13 C 0.037 3.963 14 H 0.046 0.954 15 C -0.548 4.548 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.223 -0.769 11.856 11.883 hybrid contribution -0.267 0.234 -0.564 0.666 sum -0.490 -0.535 11.292 11.315 Atomic orbital electron populations 1.21800 0.94831 1.01493 1.00468 1.20234 0.95694 0.98412 0.92581 0.91581 1.20175 0.95598 0.93335 0.95748 1.21170 1.00171 1.00107 0.91636 1.20825 1.01114 0.93433 0.98899 1.20706 1.04837 0.94522 0.87016 1.98327 1.89090 1.82478 1.36349 1.21081 1.01603 1.00231 0.90808 1.19906 0.96213 0.94125 0.94849 1.20647 1.01933 0.96874 0.92522 1.21694 0.96058 0.99514 0.97810 1.18669 0.96506 0.91103 0.90025 0.95358 1.21230 1.23795 1.19010 0.90735 0.92176 1.24957 0.95102 0.95058 0.98835 1.69880 1.33144 1.26785 1.23062 0.86662 0.79997 0.78780 0.82962 1.20794 1.21328 1.19950 0.95174 0.91033 0.93037 0.85695 0.85786 0.85692 0.90934 0.92430 0.94261 0.88508 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.54 37.16 0.32 -2.06 16 2 C -0.05 -1.00 2.37 -91.94 -0.22 -1.22 16 3 H 0.07 1.29 8.12 -51.93 -0.42 0.86 16 4 C -0.05 -0.87 5.01 -104.61 -0.52 -1.40 16 5 C -0.11 -1.75 9.48 -39.45 -0.37 -2.12 16 6 C -0.12 -1.79 9.84 -39.65 -0.39 -2.18 16 7 C -0.04 -0.67 6.31 -39.60 -0.25 -0.92 16 8 Cl -0.09 -1.20 28.96 -51.86 -1.50 -2.71 16 9 C -0.12 -1.89 9.39 -39.41 -0.37 -2.26 16 10 C -0.05 -0.91 5.74 -104.62 -0.60 -1.51 16 11 C -0.08 -1.57 5.67 -28.06 -0.16 -1.72 16 12 C -0.11 -2.51 5.10 -26.71 -0.14 -2.64 16 13 C 0.06 1.30 1.90 -91.74 -0.17 1.12 16 14 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 15 C -0.51 -13.08 7.82 -34.44 -0.27 -13.34 16 16 H 0.06 1.51 6.07 -52.49 -0.32 1.19 16 17 C 0.06 1.62 5.28 -17.82 -0.09 1.53 16 18 N -0.89 -24.39 11.40 55.43 0.63 -23.75 16 19 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 24 H 0.07 1.39 6.04 -51.93 -0.31 1.07 16 25 H 0.05 0.97 6.46 -51.93 -0.34 0.63 16 26 H 0.13 1.69 8.05 -52.49 -0.42 1.27 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.13 1.79 8.05 -52.48 -0.42 1.37 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.04 0.85 6.27 -51.93 -0.33 0.53 16 32 H 0.10 2.42 6.02 -51.93 -0.31 2.11 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 277.57 15.07 4.18 4.18 Total: -1.00 -26.15 277.57 -9.07 -35.22 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.12 Total: 0.30 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -3.24 Total: -28.74 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.63 Total: -23.75 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.71 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.15 -9.07 -35.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.549 kcal (2) G-P(sol) polarization free energy of solvation -26.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds