Wall clock time and date at job start Mon Mar 30 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.25324 * 2 1 4 4 C 1.50635 * 109.25596 * 119.47958 * 2 1 3 5 5 C 1.38917 * 117.73986 * 282.43500 * 4 2 1 6 6 C 1.37912 * 120.56302 * 179.40297 * 5 4 2 7 7 C 1.38382 * 119.75299 * 0.02562 * 6 5 4 8 8 Cl 1.73597 * 120.12326 * 180.12290 * 7 6 5 9 9 C 1.38043 * 119.74706 * 0.13917 * 7 6 5 10 10 C 1.37675 * 122.54992 * 102.12276 * 4 2 1 11 11 C 1.50631 * 122.55885 * 1.13510 * 10 4 2 12 12 C 1.52725 * 110.60172 * 342.01620 * 11 10 4 13 13 C 1.52732 * 109.22325 * 240.54780 * 2 1 3 14 14 H 1.09001 * 109.68272 * 171.19177 * 13 2 1 15 15 C 1.50705 * 109.68289 * 50.67745 * 13 2 1 16 16 H 1.08001 * 119.99574 * 0.02562 * 15 13 2 17 17 C 1.37881 * 120.00097 * 179.97438 * 15 13 2 18 18 N 1.31519 * 120.00084 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99950 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46817 * 90.00127 * 19 17 15 21 21 H 1.48498 * 109.46960 * 210.00370 * 19 17 15 22 22 H 1.48499 * 109.47081 * 330.00391 * 19 17 15 23 23 H 1.08999 * 109.47005 * 300.51961 * 1 2 3 24 24 H 1.09003 * 109.47458 * 60.52543 * 1 2 3 25 25 H 1.09002 * 109.47387 * 180.51870 * 1 2 3 26 26 H 1.08000 * 119.71565 * 359.42440 * 5 4 2 27 27 H 1.07994 * 120.12040 * 180.02562 * 6 5 4 28 28 H 1.08009 * 119.73077 * 180.02562 * 9 7 6 29 29 H 1.08996 * 109.25009 * 102.30974 * 11 10 4 30 30 H 1.08997 * 109.24937 * 221.72998 * 11 10 4 31 31 H 1.08997 * 109.67945 * 291.35707 * 12 11 10 32 32 H 1.09000 * 109.67705 * 170.82198 * 12 11 10 33 33 H 0.96989 * 119.99774 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0291 0.0000 4 6 2.0268 -0.6998 1.2380 5 6 1.9901 0.0020 2.4362 6 6 2.4191 -0.5868 3.6072 7 6 2.8908 -1.8876 3.5891 8 17 3.4302 -2.6392 5.0580 9 6 2.9310 -2.5851 2.3985 10 6 2.5011 -1.9921 1.2184 11 6 2.5862 -2.8054 -0.0467 12 6 1.7009 -2.2010 -1.1346 13 6 2.0329 -0.7091 -1.2558 14 1 3.1114 -0.5785 -1.3441 15 6 1.3509 -0.1345 -2.4707 16 1 0.6284 0.6605 -2.3589 17 6 1.6502 -0.6229 -3.7249 18 7 2.5304 -1.5906 -3.8610 19 14 0.8044 0.0889 -5.2306 20 1 1.6023 1.2261 -5.7552 21 1 0.6900 -0.9596 -6.2760 22 1 -0.5515 0.5659 -4.8576 23 1 -0.3633 0.5219 0.8853 24 1 -0.3634 0.5056 -0.8947 25 1 -0.3634 -1.0276 0.0093 26 1 1.6221 1.0173 2.4509 27 1 2.3870 -0.0347 4.5348 28 1 3.2988 -3.6005 2.3848 29 1 3.6194 -2.8239 -0.3932 30 1 2.2583 -3.8244 0.1585 31 1 0.6521 -2.3228 -0.8640 32 1 1.8954 -2.6987 -2.0846 33 1 2.7406 -1.9344 -4.7432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260704113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:04 Heat of formation + Delta-G solvation = -18.609385 kcal Electronic energy + Delta-G solvation = -16134.669638 eV Core-core repulsion = 13570.310073 eV Total energy + Delta-G solvation = -2564.359565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11750 -38.12236 -36.95533 -34.28321 -34.14890 -30.87995 -30.47937 -27.95481 -26.06589 -23.92338 -23.04310 -22.70598 -19.60186 -18.19079 -17.50222 -16.92943 -16.18927 -15.98276 -15.59407 -14.91510 -14.66015 -14.40256 -14.08433 -13.97312 -13.63379 -13.20023 -12.95758 -12.77496 -12.55771 -12.35352 -12.23208 -12.11244 -11.98695 -11.78405 -11.57387 -11.26623 -10.75545 -10.52645 -10.31739 -9.69681 -9.31607 -8.03022 -6.14378 0.27903 0.38975 1.18508 1.43794 1.45803 1.54298 2.47451 2.70935 3.25309 3.83264 3.93869 4.04663 4.31210 4.34041 4.40080 4.50002 4.64252 4.77434 4.81220 4.87219 4.97632 5.13544 5.22206 5.27811 5.29986 5.34751 5.40016 5.51464 5.55207 5.72549 5.92042 5.95078 6.03862 6.20083 6.46454 6.96574 7.52851 9.02146 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.048640 B = 0.005496 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.525020 B = 5093.092088 C = 5495.126959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 H 0.065 0.935 4 C -0.069 4.069 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.046 4.046 8 Cl -0.071 7.071 9 C -0.120 4.120 10 C -0.070 4.070 11 C -0.075 4.075 12 C -0.105 4.105 13 C 0.053 3.947 14 H -0.011 1.011 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.947 3.053 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.148 0.852 27 H 0.154 0.846 28 H 0.138 0.862 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 0.059 13.979 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 H 0.083 0.917 4 C -0.069 4.069 5 C -0.127 4.127 6 C -0.133 4.133 7 C -0.073 4.073 8 Cl -0.043 7.043 9 C -0.138 4.138 10 C -0.071 4.071 11 C -0.112 4.112 12 C -0.143 4.143 13 C 0.035 3.965 14 H 0.007 0.993 15 C -0.558 4.558 16 H 0.081 0.919 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.773 3.227 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.165 0.835 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.898 -0.117 13.982 14.012 hybrid contribution -0.016 0.024 -1.133 1.133 sum -0.914 -0.092 12.849 12.882 Atomic orbital electron populations 1.21708 0.93783 1.01151 1.01183 1.20060 0.96560 0.97993 0.91777 0.91670 1.20093 0.97198 0.93696 0.95943 1.21345 0.99644 1.00881 0.90845 1.21155 0.99367 0.93180 0.99626 1.20844 1.04125 0.94858 0.87447 1.98339 1.88810 1.82222 1.34889 1.21144 1.01272 1.00905 0.90494 1.19801 0.98002 0.94399 0.94866 1.20478 1.00368 0.98025 0.92361 1.21472 0.96690 0.98694 0.97458 1.18591 0.93971 0.92426 0.91558 0.99270 1.21619 1.23586 1.18829 0.91783 0.91893 1.25687 0.95840 0.95508 1.01570 1.70028 1.34497 1.27996 1.23346 0.85726 0.79314 0.77927 0.79707 1.20594 1.21428 1.19060 0.92112 0.92494 0.93887 0.83466 0.82800 0.84418 0.92251 0.90570 0.94249 0.91860 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.54 71.98 0.61 -3.73 16 2 C -0.05 -1.79 2.37 -11.65 -0.03 -1.82 16 3 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 4 C -0.07 -2.41 5.01 -19.86 -0.10 -2.51 16 5 C -0.11 -3.06 9.48 22.36 0.21 -2.85 16 6 C -0.11 -2.89 9.84 22.23 0.22 -2.67 16 7 C -0.05 -1.25 6.31 22.26 0.14 -1.11 16 8 Cl -0.07 -1.66 28.96 -2.72 -0.08 -1.74 16 9 C -0.12 -3.59 9.39 22.38 0.21 -3.38 16 10 C -0.07 -2.48 5.74 -19.86 -0.11 -2.59 16 11 C -0.08 -2.90 5.67 29.73 0.17 -2.73 16 12 C -0.11 -4.84 5.10 30.61 0.16 -4.68 16 13 C 0.05 2.56 1.90 -11.52 -0.02 2.54 16 14 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 15 C -0.52 -27.33 7.82 25.60 0.20 -27.13 16 16 H 0.06 3.20 6.07 -2.91 -0.02 3.18 16 17 C 0.01 0.65 5.28 84.65 0.45 1.10 16 18 N -0.92 -52.22 11.40 21.45 0.24 -51.97 16 19 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 24 H 0.06 2.17 6.04 -2.39 -0.01 2.16 16 25 H 0.04 1.59 6.46 -2.39 -0.02 1.57 16 26 H 0.15 3.43 8.05 -2.91 -0.02 3.40 16 27 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.14 3.68 8.05 -2.91 -0.02 3.66 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 31 H 0.04 1.76 6.27 -2.39 -0.01 1.74 16 32 H 0.06 3.32 6.02 -2.39 -0.01 3.31 16 33 H 0.26 14.07 8.31 -92.72 -0.77 13.30 16 Total: -1.00 -56.95 277.57 5.40 -51.55 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.11 Total: 8.97 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 2.10 Total: -51.56 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.24 Total: -51.97 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -56.95 5.40 -51.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.939 kcal (2) G-P(sol) polarization free energy of solvation -56.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds