Wall clock time and date at job start Mon Mar 30 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.24783 * 2 1 4 4 C 1.50633 * 109.25230 * 119.46855 * 2 1 3 5 5 C 1.38898 * 117.73862 * 282.58665 * 4 2 1 6 6 C 1.38045 * 120.53267 * 179.65329 * 5 4 2 7 7 Cl 1.73597 * 120.12722 * 179.97438 * 6 5 4 8 8 C 1.38384 * 119.74385 * 359.92069 * 6 5 4 9 9 C 1.37912 * 119.75745 * 0.13744 * 8 6 5 10 10 C 1.37675 * 122.56422 * 102.67779 * 4 2 1 11 11 C 1.50632 * 122.55290 * 0.31185 * 10 4 2 12 12 C 1.52727 * 110.65516 * 342.60002 * 11 10 4 13 13 C 1.52733 * 109.22282 * 240.55724 * 2 1 3 14 14 H 1.08998 * 109.68306 * 171.10559 * 13 2 1 15 15 C 1.50701 * 109.67968 * 50.59369 * 13 2 1 16 16 H 1.08001 * 119.99869 * 0.02562 * 15 13 2 17 17 C 1.37883 * 119.99843 * 180.02562 * 15 13 2 18 18 N 1.31515 * 119.99758 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99892 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47140 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47366 * 119.99567 * 19 17 15 22 22 H 1.48496 * 109.47187 * 239.99548 * 19 17 15 23 23 H 1.08996 * 109.47434 * 300.53487 * 1 2 3 24 24 H 1.09003 * 109.46813 * 60.53018 * 1 2 3 25 25 H 1.08998 * 109.47059 * 180.53022 * 1 2 3 26 26 H 1.08002 * 119.73257 * 359.68068 * 5 4 2 27 27 H 1.07996 * 120.11912 * 180.15959 * 8 6 5 28 28 H 1.08002 * 119.71487 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.39835 * 222.17364 * 11 10 4 30 30 H 1.09009 * 109.00527 * 102.77068 * 11 10 4 31 31 H 1.08997 * 109.67954 * 291.19639 * 12 11 10 32 32 H 1.09004 * 109.68104 * 170.64877 * 12 11 10 33 33 H 0.96998 * 119.99647 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0267 -0.6996 1.2381 5 6 1.9869 0.0013 2.4366 6 6 2.4211 -0.5868 3.6077 7 17 2.3673 0.2992 5.0996 8 6 2.8983 -1.8856 3.5879 9 6 2.9392 -2.5817 2.3980 10 6 2.5114 -1.9880 1.2172 11 6 2.5919 -2.8033 -0.0469 12 6 1.7036 -2.2013 -1.1337 13 6 2.0329 -0.7089 -1.2559 14 1 3.1112 -0.5770 -1.3451 15 6 1.3494 -0.1354 -2.4704 16 1 0.6260 0.6587 -2.3584 17 6 1.6476 -0.6246 -3.7246 18 7 2.5288 -1.5913 -3.8609 19 14 0.8009 0.0867 -5.2301 20 1 -0.1399 1.1561 -4.8100 21 1 1.8197 0.6558 -6.1484 22 1 0.0494 -0.9867 -5.9288 23 1 -0.3634 0.5221 0.8851 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3633 -1.0276 0.0095 26 1 1.6129 1.0144 2.4525 27 1 3.2370 -2.3524 4.5009 28 1 3.3113 -3.5955 2.3835 29 1 2.2672 -3.8232 0.1589 30 1 3.6250 -2.8183 -0.3944 31 1 0.6555 -2.3249 -0.8612 32 1 1.8976 -2.6991 -2.0838 33 1 2.7388 -1.9352 -4.7433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260756435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:11 Heat of formation + Delta-G solvation = -7.663673 kcal Electronic energy + Delta-G solvation = -16153.983713 eV Core-core repulsion = 13590.098790 eV Total energy + Delta-G solvation = -2563.884923 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.74811 -36.77351 -35.64728 -32.65481 -32.40877 -29.63003 -28.87725 -26.21633 -24.41806 -22.42272 -21.61443 -21.22122 -18.04213 -16.38458 -16.06180 -15.40535 -14.68659 -14.41055 -14.15201 -13.35878 -13.30378 -12.89973 -12.66253 -12.53910 -11.94174 -11.79089 -11.38134 -11.12248 -11.05101 -10.89261 -10.64499 -10.57653 -10.40376 -10.33411 -9.88749 -9.49982 -9.04906 -8.68862 -8.48568 -8.29242 -8.02277 -6.01406 -4.06640 1.51847 1.63483 2.34114 3.27972 3.36840 3.39755 3.96761 4.41617 5.07943 5.16044 5.29174 5.36846 5.61597 5.65923 5.84491 6.01539 6.07340 6.18248 6.26099 6.33390 6.44658 6.50096 6.60887 6.64160 6.77646 6.90375 7.03278 7.10014 7.21478 7.25817 7.47709 7.71910 7.95168 8.07688 8.42409 8.96367 9.57847 11.04877 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.040964 B = 0.005775 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.354824 B = 4847.520488 C = 5333.228256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.050 4.050 3 H 0.066 0.934 4 C -0.042 4.042 5 C -0.114 4.114 6 C -0.044 4.044 7 Cl -0.091 7.091 8 C -0.125 4.125 9 C -0.117 4.117 10 C -0.058 4.058 11 C -0.084 4.084 12 C -0.114 4.114 13 C 0.056 3.944 14 H 0.028 0.972 15 C -0.509 4.509 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.029 0.971 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -0.735 11.873 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 H 0.084 0.916 4 C -0.042 4.042 5 C -0.133 4.133 6 C -0.070 4.070 7 Cl -0.062 7.062 8 C -0.144 4.144 9 C -0.135 4.135 10 C -0.058 4.058 11 C -0.121 4.121 12 C -0.151 4.151 13 C 0.037 3.963 14 H 0.047 0.953 15 C -0.547 4.547 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.212 -0.760 11.870 11.896 hybrid contribution -0.326 0.385 -0.562 0.756 sum -0.538 -0.375 11.307 11.326 Atomic orbital electron populations 1.21803 0.94812 1.01496 1.00518 1.20231 0.95741 0.98431 0.92412 0.91575 1.20019 0.95884 0.93374 0.94933 1.21110 1.00874 1.00515 0.90775 1.20734 1.05856 0.93645 0.86793 1.98328 1.97423 1.76116 1.34342 1.20802 1.01892 0.92963 0.98696 1.21143 1.00748 0.99926 0.91696 1.20070 0.95983 0.94098 0.95623 1.20655 1.01863 0.96839 0.92708 1.21697 0.96056 0.99516 0.97873 1.18669 0.96517 0.91106 0.89965 0.95346 1.21271 1.23656 1.19016 0.90725 0.92103 1.24957 0.95101 0.95076 0.98845 1.69892 1.33118 1.26923 1.22951 0.86604 0.79484 0.79060 0.83259 1.19813 1.21139 1.21126 0.95163 0.90993 0.93018 0.85619 0.85798 0.85769 0.92410 0.91004 0.94277 0.88527 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.53 37.16 0.32 -2.10 16 2 C -0.05 -0.99 2.37 -91.94 -0.22 -1.21 16 3 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 4 C -0.04 -0.76 5.01 -104.62 -0.52 -1.29 16 5 C -0.11 -1.87 9.26 -39.41 -0.37 -2.24 16 6 C -0.04 -0.67 6.31 -39.60 -0.25 -0.92 16 7 Cl -0.09 -1.21 28.96 -51.86 -1.50 -2.72 16 8 C -0.12 -1.79 9.84 -39.65 -0.39 -2.18 16 9 C -0.12 -1.77 9.61 -39.45 -0.38 -2.15 16 10 C -0.06 -1.02 5.74 -104.61 -0.60 -1.62 16 11 C -0.08 -1.56 5.67 -28.06 -0.16 -1.72 16 12 C -0.11 -2.51 5.10 -26.70 -0.14 -2.65 16 13 C 0.06 1.31 1.90 -91.74 -0.17 1.14 16 14 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 15 C -0.51 -13.09 7.82 -34.44 -0.27 -13.35 16 16 H 0.06 1.54 6.06 -52.49 -0.32 1.22 16 17 C 0.06 1.62 5.28 -17.82 -0.09 1.52 16 18 N -0.89 -24.37 11.40 55.43 0.63 -23.74 16 19 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 24 H 0.07 1.41 6.04 -51.93 -0.31 1.09 16 25 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16 26 H 0.13 1.91 8.05 -52.49 -0.42 1.49 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 1.58 8.05 -52.49 -0.42 1.15 16 29 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 30 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.04 0.85 6.27 -51.93 -0.33 0.52 16 32 H 0.10 2.41 6.02 -51.93 -0.31 2.10 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 277.56 15.07 4.18 4.18 Total: -1.00 -26.21 277.56 -9.07 -35.28 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.11 Total: 0.22 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -3.24 Total: -28.77 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.63 Total: -23.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.21 -9.07 -35.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.615 kcal (2) G-P(sol) polarization free energy of solvation -26.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds