Wall clock time and date at job start Mon Mar 30 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.24783 * 2 1 4 4 C 1.50633 * 109.25230 * 119.46855 * 2 1 3 5 5 C 1.38898 * 117.73862 * 282.58665 * 4 2 1 6 6 C 1.38045 * 120.53267 * 179.65329 * 5 4 2 7 7 Cl 1.73597 * 120.12722 * 179.97438 * 6 5 4 8 8 C 1.38384 * 119.74385 * 359.92069 * 6 5 4 9 9 C 1.37912 * 119.75745 * 0.13744 * 8 6 5 10 10 C 1.37675 * 122.56422 * 102.67779 * 4 2 1 11 11 C 1.50632 * 122.55290 * 0.31185 * 10 4 2 12 12 C 1.52727 * 110.65516 * 342.60002 * 11 10 4 13 13 C 1.52733 * 109.22282 * 240.55724 * 2 1 3 14 14 H 1.08998 * 109.68306 * 171.10559 * 13 2 1 15 15 C 1.50701 * 109.67968 * 50.59369 * 13 2 1 16 16 H 1.08001 * 119.99869 * 0.02562 * 15 13 2 17 17 C 1.37883 * 119.99843 * 180.02562 * 15 13 2 18 18 N 1.31515 * 119.99758 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99892 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47140 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47366 * 119.99567 * 19 17 15 22 22 H 1.48496 * 109.47187 * 239.99548 * 19 17 15 23 23 H 1.08996 * 109.47434 * 300.53487 * 1 2 3 24 24 H 1.09003 * 109.46813 * 60.53018 * 1 2 3 25 25 H 1.08998 * 109.47059 * 180.53022 * 1 2 3 26 26 H 1.08002 * 119.73257 * 359.68068 * 5 4 2 27 27 H 1.07996 * 120.11912 * 180.15959 * 8 6 5 28 28 H 1.08002 * 119.71487 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.39835 * 222.17364 * 11 10 4 30 30 H 1.09009 * 109.00527 * 102.77068 * 11 10 4 31 31 H 1.08997 * 109.67954 * 291.19639 * 12 11 10 32 32 H 1.09004 * 109.68104 * 170.64877 * 12 11 10 33 33 H 0.96998 * 119.99647 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0267 -0.6996 1.2381 5 6 1.9869 0.0013 2.4366 6 6 2.4211 -0.5868 3.6077 7 17 2.3673 0.2992 5.0996 8 6 2.8983 -1.8856 3.5879 9 6 2.9392 -2.5817 2.3980 10 6 2.5114 -1.9880 1.2172 11 6 2.5919 -2.8033 -0.0469 12 6 1.7036 -2.2013 -1.1337 13 6 2.0329 -0.7089 -1.2559 14 1 3.1112 -0.5770 -1.3451 15 6 1.3494 -0.1354 -2.4704 16 1 0.6260 0.6587 -2.3584 17 6 1.6476 -0.6246 -3.7246 18 7 2.5288 -1.5913 -3.8609 19 14 0.8009 0.0867 -5.2301 20 1 -0.1399 1.1561 -4.8100 21 1 1.8197 0.6558 -6.1484 22 1 0.0494 -0.9867 -5.9288 23 1 -0.3634 0.5221 0.8851 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3633 -1.0276 0.0095 26 1 1.6129 1.0144 2.4525 27 1 3.2370 -2.3524 4.5009 28 1 3.3113 -3.5955 2.3835 29 1 2.2672 -3.8232 0.1589 30 1 3.6250 -2.8183 -0.3944 31 1 0.6555 -2.3249 -0.8612 32 1 1.8976 -2.6991 -2.0838 33 1 2.7388 -1.9352 -4.7433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260756435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:11 Heat of formation + Delta-G solvation = -18.678279 kcal Electronic energy + Delta-G solvation = -16154.461342 eV Core-core repulsion = 13590.098790 eV Total energy + Delta-G solvation = -2564.362552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11813 -38.10384 -36.99360 -34.31801 -34.05660 -31.08355 -30.31289 -27.94438 -26.11955 -23.84283 -23.13663 -22.65964 -19.63691 -18.18824 -17.43562 -16.96646 -16.16489 -16.03015 -15.58781 -14.89420 -14.65726 -14.39942 -14.16150 -14.05869 -13.44854 -13.23988 -12.93485 -12.79523 -12.59807 -12.37913 -12.25298 -12.16088 -11.89011 -11.74140 -11.61814 -11.26680 -10.77921 -10.52542 -10.32235 -9.69457 -9.31252 -8.03740 -6.14838 0.26961 0.40435 1.18944 1.42055 1.45424 1.54956 2.46933 2.71033 3.24596 3.83811 3.93008 4.05872 4.31079 4.33624 4.38924 4.48706 4.66685 4.78914 4.81034 4.83701 5.02141 5.12199 5.21594 5.25473 5.30378 5.35055 5.37728 5.49733 5.55840 5.73410 5.91574 5.94831 6.03429 6.20190 6.46317 6.95807 7.52244 9.01573 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.040964 B = 0.005775 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.354824 B = 4847.520488 C = 5333.228256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.045 4.045 3 H 0.060 0.940 4 C -0.062 4.062 5 C -0.118 4.118 6 C -0.046 4.046 7 Cl -0.072 7.072 8 C -0.116 4.116 9 C -0.110 4.110 10 C -0.078 4.078 11 C -0.076 4.076 12 C -0.107 4.107 13 C 0.055 3.945 14 H -0.010 1.010 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.283 1.283 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.134 0.866 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 -0.858 13.925 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 H 0.078 0.922 4 C -0.062 4.062 5 C -0.137 4.137 6 C -0.072 4.072 7 Cl -0.043 7.043 8 C -0.135 4.135 9 C -0.128 4.128 10 C -0.078 4.078 11 C -0.113 4.113 12 C -0.145 4.145 13 C 0.036 3.964 14 H 0.008 0.992 15 C -0.558 4.558 16 H 0.079 0.921 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.773 3.227 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.209 1.209 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.152 0.848 27 H 0.173 0.827 28 H 0.170 0.830 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.602 -0.873 13.932 13.972 hybrid contribution -0.176 0.449 -1.114 1.214 sum -0.778 -0.424 12.818 12.848 Atomic orbital electron populations 1.21703 0.93853 1.01245 1.00998 1.20046 0.96555 0.97837 0.91900 0.92189 1.19861 0.97654 0.93992 0.94739 1.21124 1.01141 1.00818 0.90612 1.20863 1.05022 0.94168 0.87144 1.98338 1.97296 1.75800 1.32883 1.21158 1.00345 0.92439 0.99517 1.21370 0.99583 1.01076 0.90748 1.20048 0.97622 0.94108 0.96053 1.20497 1.00324 0.98130 0.92312 1.21479 0.96775 0.98496 0.97703 1.18578 0.93967 0.92580 0.91265 0.99207 1.21637 1.23488 1.18857 0.91852 0.92070 1.25670 0.95834 0.95522 1.01500 1.70029 1.34368 1.28034 1.23313 0.85677 0.78514 0.78463 0.80026 1.19075 1.21178 1.20907 0.92591 0.92429 0.93592 0.84843 0.82731 0.83032 0.90073 0.92144 0.94303 0.91806 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 8.53 71.98 0.61 -3.87 16 2 C -0.05 -1.82 2.37 -11.65 -0.03 -1.85 16 3 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 4 C -0.06 -2.22 5.01 -19.86 -0.10 -2.32 16 5 C -0.12 -3.66 9.26 22.38 0.21 -3.45 16 6 C -0.05 -1.24 6.31 22.26 0.14 -1.10 16 7 Cl -0.07 -1.70 28.96 -2.72 -0.08 -1.78 16 8 C -0.12 -2.89 9.84 22.23 0.22 -2.67 16 9 C -0.11 -2.98 9.61 22.36 0.21 -2.76 16 10 C -0.08 -2.68 5.74 -19.86 -0.11 -2.79 16 11 C -0.08 -2.82 5.67 29.74 0.17 -2.65 16 12 C -0.11 -4.86 5.10 30.61 0.16 -4.70 16 13 C 0.05 2.65 1.90 -11.52 -0.02 2.63 16 14 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 15 C -0.52 -27.54 7.82 25.60 0.20 -27.34 16 16 H 0.06 3.16 6.06 -2.91 -0.02 3.14 16 17 C 0.01 0.70 5.28 84.66 0.45 1.14 16 18 N -0.92 -51.96 11.40 21.45 0.24 -51.72 16 19 Si 0.95 42.90 29.54 68.60 2.03 44.92 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 24 H 0.06 2.26 6.04 -2.39 -0.01 2.24 16 25 H 0.05 1.72 6.47 -2.39 -0.02 1.71 16 26 H 0.13 3.81 8.05 -2.91 -0.02 3.79 16 27 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.15 3.24 8.05 -2.91 -0.02 3.22 16 29 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.04 1.72 6.27 -2.39 -0.01 1.71 16 32 H 0.06 3.32 6.02 -2.38 -0.01 3.31 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -57.11 277.56 5.40 -51.71 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.11 Total: 8.60 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 2.10 Total: -51.73 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.24 Total: -51.72 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -57.11 5.40 -51.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.032 kcal (2) G-P(sol) polarization free energy of solvation -57.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds