Wall clock time and date at job start Mon Mar 30 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.25343 * 2 1 4 4 C 1.52737 * 109.25524 * 119.47351 * 2 1 3 5 5 C 1.53326 * 108.36851 * 171.39004 * 4 2 1 6 6 C 1.52735 * 108.38323 * 290.07512 * 5 4 2 7 7 H 1.09001 * 109.25335 * 171.31826 * 6 5 4 8 8 C 1.50694 * 109.25171 * 290.78284 * 6 5 4 9 9 H 1.08007 * 119.99971 * 84.88529 * 8 6 5 10 10 C 1.37876 * 120.00274 * 264.88333 * 8 6 5 11 11 N 1.31509 * 119.99860 * 5.67408 * 10 8 6 12 12 Si 1.86799 * 120.00274 * 185.67624 * 10 8 6 13 13 H 1.48501 * 109.47328 * 90.00015 * 12 10 8 14 14 H 1.48501 * 109.47072 * 210.00087 * 12 10 8 15 15 H 1.48499 * 109.47037 * 330.00053 * 12 10 8 16 16 C 1.50639 * 110.59474 * 51.03120 * 6 5 4 17 17 C 1.38896 * 117.73655 * 162.53909 * 16 6 5 18 18 C 1.38044 * 120.53621 * 179.72842 * 17 16 6 19 19 Cl 1.73597 * 120.12978 * 180.02562 * 18 17 16 20 20 C 1.38386 * 119.74341 * 0.02562 * 18 17 16 21 21 C 1.37904 * 119.75588 * 0.11183 * 20 18 17 22 22 C 1.37667 * 122.56981 * 342.48655 * 16 6 5 23 23 H 1.09001 * 109.47233 * 300.52701 * 1 2 3 24 24 H 1.09008 * 109.47063 * 180.52634 * 1 2 3 25 25 H 1.09004 * 109.47190 * 60.53106 * 1 2 3 26 26 H 1.08996 * 109.68364 * 291.10981 * 4 2 1 27 27 H 1.09008 * 109.68260 * 51.67137 * 4 2 1 28 28 H 1.08999 * 109.68093 * 49.79522 * 5 4 2 29 29 H 1.08999 * 109.68200 * 170.35342 * 5 4 2 30 30 H 0.97004 * 120.00639 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.72965 * 359.74083 * 17 16 6 32 32 H 1.08007 * 120.12088 * 180.14324 * 20 18 17 33 33 H 1.08003 * 119.71920 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0337 -0.7095 1.2553 5 6 3.5513 -0.8901 1.1322 6 6 3.8263 -1.9277 0.0456 7 1 4.8959 -1.9556 -0.1622 8 6 3.3784 -3.2832 0.5283 9 1 2.3472 -3.5834 0.4143 10 6 4.2851 -4.1402 1.1153 11 7 5.5128 -3.7346 1.3556 12 14 3.7696 -5.8773 1.5691 13 1 4.0289 -6.7860 0.4235 14 1 4.5489 -6.3328 2.7483 15 1 2.3212 -5.8943 1.8964 16 6 3.0836 -1.5810 -1.2183 17 6 3.4968 -2.1870 -2.3978 18 6 2.8536 -1.9153 -3.5886 19 17 3.3785 -2.6791 -5.0565 20 6 1.7888 -1.0317 -3.6077 21 6 1.3797 -0.4274 -2.4376 22 6 2.0268 -0.6990 -1.2386 23 1 -0.3634 0.5220 0.8852 24 1 -0.3633 -1.0277 0.0094 25 1 -0.3634 0.5056 -0.8947 26 1 1.8058 -0.1065 2.1342 27 1 1.5539 -1.6842 1.3437 28 1 4.0130 0.0587 0.8589 29 1 3.9580 -1.2368 2.0822 30 1 6.1506 -4.3374 1.7689 31 1 4.3280 -2.8764 -2.3830 32 1 1.2796 -0.8164 -4.5356 33 1 0.5488 0.2624 -2.4532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:59 Heat of formation + Delta-G solvation = -11.839396 kcal Electronic energy + Delta-G solvation = -16273.323941 eV Core-core repulsion = 13709.257945 eV Total energy + Delta-G solvation = -2564.065996 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58783 -36.51377 -35.19984 -33.85605 -31.60567 -29.39842 -28.96457 -26.56078 -23.97949 -22.48721 -21.96496 -20.42668 -18.64536 -16.34266 -15.98690 -15.17429 -14.98424 -14.51148 -13.72881 -13.41875 -13.15366 -12.85259 -12.52904 -12.25626 -12.09924 -11.57426 -11.38827 -11.25848 -11.03325 -10.98320 -10.80057 -10.57912 -10.44923 -10.34756 -9.95697 -9.52523 -9.16672 -9.06686 -8.46427 -8.09515 -7.77108 -6.09742 -4.13327 1.78959 1.99462 2.62828 3.27423 3.34556 3.37599 4.24417 4.43095 5.16276 5.22021 5.30333 5.45953 5.53217 5.63921 5.90023 5.92087 6.03322 6.07963 6.23091 6.32058 6.41312 6.49429 6.60282 6.63226 6.68550 6.85166 6.93229 7.04102 7.20775 7.30766 7.52401 7.59772 7.80643 7.84945 8.29306 8.93620 9.50292 10.98209 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.009674 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.042455 B = 2893.647214 C = 4088.000071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.101 4.101 6 C 0.064 3.936 7 H 0.069 0.931 8 C -0.501 4.501 9 H 0.056 0.944 10 C 0.066 3.934 11 N -0.889 5.889 12 Si 0.890 3.110 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.011 4.011 17 C -0.103 4.103 18 C -0.039 4.039 19 Cl -0.096 7.096 20 C -0.140 4.140 21 C -0.115 4.115 22 C -0.084 4.084 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 6.347 -5.505 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.089 0.911 4 C -0.145 4.145 5 C -0.139 4.139 6 C 0.045 3.955 7 H 0.087 0.913 8 C -0.539 4.539 9 H 0.074 0.926 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.718 3.282 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.012 4.012 17 C -0.121 4.121 18 C -0.065 4.065 19 Cl -0.067 7.067 20 C -0.159 4.159 21 C -0.133 4.133 22 C -0.084 4.084 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.325 6.207 -5.554 10.458 hybrid contribution -0.187 -1.154 -0.013 1.169 sum -6.512 5.053 -5.567 9.947 Atomic orbital electron populations 1.21910 0.95368 1.01927 1.00825 1.19980 0.94776 0.98449 0.93332 0.91149 1.21565 0.98145 1.00349 0.94473 1.21589 0.93698 0.97238 1.01365 1.17998 0.96756 0.94167 0.86531 0.91302 1.20890 0.95440 0.98798 1.38730 0.92614 1.24955 0.94956 0.98317 0.95399 1.69926 1.04277 1.35799 1.42681 0.86621 0.78715 0.84875 0.78025 1.20542 1.21247 1.19818 1.20462 0.93583 0.90819 0.96312 1.21147 1.00638 1.00172 0.90176 1.20826 0.98966 0.99673 0.87065 1.98314 1.90420 1.81307 1.36685 1.20667 0.97557 0.99078 0.98606 1.21027 1.00064 1.00409 0.91841 1.19723 0.96197 0.98103 0.94394 0.92894 0.92497 0.93032 0.93546 0.90771 0.95321 0.91709 0.92758 0.85255 0.86285 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.71 37.16 0.32 -1.64 16 2 C -0.05 -0.77 2.77 -91.93 -0.25 -1.03 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.11 -1.99 5.21 -26.70 -0.14 -2.13 16 5 C -0.10 -2.15 5.41 -26.70 -0.14 -2.30 16 6 C 0.06 1.51 2.23 -93.09 -0.21 1.30 16 7 H 0.07 1.82 7.34 -51.93 -0.38 1.43 16 8 C -0.50 -12.98 7.22 -34.44 -0.25 -13.23 16 9 H 0.06 1.47 7.61 -52.48 -0.40 1.07 16 10 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 11 N -0.89 -24.65 12.83 55.43 0.71 -23.93 16 12 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C -0.01 -0.24 5.00 -104.62 -0.52 -0.76 16 17 C -0.10 -2.11 9.31 -39.41 -0.37 -2.47 16 18 C -0.04 -0.71 6.31 -39.60 -0.25 -0.96 16 19 Cl -0.10 -1.56 28.96 -51.86 -1.50 -3.06 16 20 C -0.14 -2.28 9.84 -39.65 -0.39 -2.68 16 21 C -0.12 -1.86 9.04 -39.45 -0.36 -2.22 16 22 C -0.08 -1.54 5.43 -104.60 -0.57 -2.11 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.51 7.03 -51.92 -0.37 1.14 16 28 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.06 1.50 8.11 -51.93 -0.42 1.08 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.13 2.77 8.05 -52.49 -0.42 2.35 16 32 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.12 1.60 6.32 -52.48 -0.33 1.27 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -26.48 282.43 -9.10 -35.58 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.32 Total: -0.13 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -3.22 Total: -28.55 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.71 Total: -23.93 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.50 Total: -3.06 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.48 -9.10 -35.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.742 kcal (2) G-P(sol) polarization free energy of solvation -26.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds