Wall clock time and date at job start Mon Mar 30 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.25343 * 2 1 4 4 C 1.52737 * 109.25524 * 119.47351 * 2 1 3 5 5 C 1.53326 * 108.36851 * 171.39004 * 4 2 1 6 6 C 1.52735 * 108.38323 * 290.07512 * 5 4 2 7 7 H 1.09001 * 109.25335 * 171.31826 * 6 5 4 8 8 C 1.50694 * 109.25171 * 290.78284 * 6 5 4 9 9 H 1.08007 * 119.99971 * 84.88529 * 8 6 5 10 10 C 1.37876 * 120.00274 * 264.88333 * 8 6 5 11 11 N 1.31509 * 119.99860 * 5.67408 * 10 8 6 12 12 Si 1.86799 * 120.00274 * 185.67624 * 10 8 6 13 13 H 1.48501 * 109.47328 * 90.00015 * 12 10 8 14 14 H 1.48501 * 109.47072 * 210.00087 * 12 10 8 15 15 H 1.48499 * 109.47037 * 330.00053 * 12 10 8 16 16 C 1.50639 * 110.59474 * 51.03120 * 6 5 4 17 17 C 1.38896 * 117.73655 * 162.53909 * 16 6 5 18 18 C 1.38044 * 120.53621 * 179.72842 * 17 16 6 19 19 Cl 1.73597 * 120.12978 * 180.02562 * 18 17 16 20 20 C 1.38386 * 119.74341 * 0.02562 * 18 17 16 21 21 C 1.37904 * 119.75588 * 0.11183 * 20 18 17 22 22 C 1.37667 * 122.56981 * 342.48655 * 16 6 5 23 23 H 1.09001 * 109.47233 * 300.52701 * 1 2 3 24 24 H 1.09008 * 109.47063 * 180.52634 * 1 2 3 25 25 H 1.09004 * 109.47190 * 60.53106 * 1 2 3 26 26 H 1.08996 * 109.68364 * 291.10981 * 4 2 1 27 27 H 1.09008 * 109.68260 * 51.67137 * 4 2 1 28 28 H 1.08999 * 109.68093 * 49.79522 * 5 4 2 29 29 H 1.08999 * 109.68200 * 170.35342 * 5 4 2 30 30 H 0.97004 * 120.00639 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.72965 * 359.74083 * 17 16 6 32 32 H 1.08007 * 120.12088 * 180.14324 * 20 18 17 33 33 H 1.08003 * 119.71920 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0337 -0.7095 1.2553 5 6 3.5513 -0.8901 1.1322 6 6 3.8263 -1.9277 0.0456 7 1 4.8959 -1.9556 -0.1622 8 6 3.3784 -3.2832 0.5283 9 1 2.3472 -3.5834 0.4143 10 6 4.2851 -4.1402 1.1153 11 7 5.5128 -3.7346 1.3556 12 14 3.7696 -5.8773 1.5691 13 1 4.0289 -6.7860 0.4235 14 1 4.5489 -6.3328 2.7483 15 1 2.3212 -5.8943 1.8964 16 6 3.0836 -1.5810 -1.2183 17 6 3.4968 -2.1870 -2.3978 18 6 2.8536 -1.9153 -3.5886 19 17 3.3785 -2.6791 -5.0565 20 6 1.7888 -1.0317 -3.6077 21 6 1.3797 -0.4274 -2.4376 22 6 2.0268 -0.6990 -1.2386 23 1 -0.3634 0.5220 0.8852 24 1 -0.3633 -1.0277 0.0094 25 1 -0.3634 0.5056 -0.8947 26 1 1.8058 -0.1065 2.1342 27 1 1.5539 -1.6842 1.3437 28 1 4.0130 0.0587 0.8589 29 1 3.9580 -1.2368 2.0822 30 1 6.1506 -4.3374 1.7689 31 1 4.3280 -2.8764 -2.3830 32 1 1.2796 -0.8164 -4.5356 33 1 0.5488 0.2624 -2.4532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:59 Heat of formation + Delta-G solvation = -23.536871 kcal Electronic energy + Delta-G solvation = -16273.831181 eV Core-core repulsion = 13709.257945 eV Total energy + Delta-G solvation = -2564.573236 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04840 -37.92122 -36.65863 -35.50063 -33.42426 -30.88055 -30.36564 -28.22191 -25.70863 -23.94088 -23.45946 -21.89948 -20.25583 -18.16497 -17.57068 -16.62143 -16.57673 -16.19109 -15.16447 -14.82247 -14.72835 -14.35864 -14.09721 -13.92146 -13.43898 -13.08148 -12.88868 -12.83583 -12.64000 -12.57311 -12.34351 -12.21840 -11.93351 -11.80155 -11.51306 -11.14280 -11.00906 -10.71993 -10.45200 -9.57855 -9.23736 -8.13892 -6.23047 0.36425 0.56249 1.24610 1.37577 1.39584 1.48361 2.39894 2.85431 3.16639 3.89226 3.94779 4.11283 4.22156 4.34696 4.48518 4.55587 4.66991 4.75416 4.89133 4.89993 5.07322 5.13623 5.17335 5.19845 5.32860 5.38984 5.46981 5.50908 5.55781 5.65664 5.72481 5.88526 6.03118 6.18027 6.31807 6.89421 7.42386 8.93253 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.009674 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.042455 B = 2893.647214 C = 4088.000071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 H 0.090 0.910 4 C -0.101 4.101 5 C -0.097 4.097 6 C 0.065 3.935 7 H 0.024 0.976 8 C -0.501 4.501 9 H 0.047 0.953 10 C 0.016 3.984 11 N -0.923 5.923 12 Si 0.946 3.054 13 H -0.279 1.279 14 H -0.283 1.283 15 H -0.267 1.267 16 C -0.043 4.043 17 C -0.126 4.126 18 C -0.045 4.045 19 Cl -0.082 7.082 20 C -0.128 4.128 21 C -0.104 4.104 22 C -0.088 4.088 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 7.879 -6.622 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 H 0.108 0.892 4 C -0.139 4.139 5 C -0.135 4.135 6 C 0.046 3.954 7 H 0.043 0.957 8 C -0.539 4.539 9 H 0.065 0.935 10 C -0.183 4.183 11 N -0.562 5.562 12 Si 0.772 3.228 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.043 4.043 17 C -0.145 4.145 18 C -0.072 4.072 19 Cl -0.053 7.053 20 C -0.147 4.147 21 C -0.121 4.121 22 C -0.088 4.088 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.184 7.739 -6.675 13.740 hybrid contribution 0.703 -1.585 0.246 1.751 sum -8.480 6.154 -6.429 12.293 Atomic orbital electron populations 1.21873 0.92638 1.01773 1.03142 1.20045 0.96923 0.98592 0.90855 0.89156 1.21485 0.95198 1.00016 0.97181 1.21456 0.96385 0.96787 0.98885 1.17808 0.94623 0.94111 0.88830 0.95742 1.21104 0.94856 1.00044 1.37919 0.93519 1.25654 0.95068 1.01734 0.95832 1.70047 1.05220 1.36879 1.44102 0.85737 0.78588 0.80821 0.77686 1.20511 1.20851 1.19115 1.20245 0.95475 0.93501 0.95092 1.20997 1.00955 1.00865 0.91666 1.20914 0.99368 1.00158 0.86725 1.98315 1.90448 1.81196 1.35383 1.21113 0.96138 0.97178 1.00229 1.21432 1.00191 1.00062 0.90452 1.20016 0.95120 0.97159 0.96540 0.90964 0.93857 0.90425 0.91053 0.93165 0.94202 0.94776 0.92941 0.88099 0.82798 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.71 71.98 0.63 -2.51 16 2 C -0.05 -1.37 2.77 -11.64 -0.03 -1.40 16 3 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.10 -3.64 5.21 30.62 0.16 -3.48 16 5 C -0.10 -4.27 5.41 30.62 0.17 -4.10 16 6 C 0.06 3.23 2.23 -12.40 -0.03 3.20 16 7 H 0.02 1.40 7.34 -2.39 -0.02 1.38 16 8 C -0.50 -27.18 7.22 25.60 0.18 -26.99 16 9 H 0.05 2.56 7.61 -2.91 -0.02 2.54 16 10 C 0.02 0.87 5.45 84.66 0.46 1.33 16 11 N -0.92 -53.92 12.83 21.45 0.28 -53.65 16 12 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 C -0.04 -1.83 5.00 -19.86 -0.10 -1.93 16 17 C -0.13 -5.32 9.31 22.38 0.21 -5.11 16 18 C -0.05 -1.58 6.31 22.26 0.14 -1.44 16 19 Cl -0.08 -2.57 28.96 -2.72 -0.08 -2.65 16 20 C -0.13 -3.69 9.84 22.23 0.22 -3.47 16 21 C -0.10 -2.90 9.04 22.35 0.20 -2.70 16 22 C -0.09 -3.06 5.43 -19.85 -0.11 -3.16 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.08 1.38 6.35 -2.38 -0.02 1.36 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.03 7.03 -2.38 -0.02 2.02 16 28 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 29 H 0.03 1.65 8.11 -2.39 -0.02 1.63 16 30 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 31 H 0.10 4.69 8.05 -2.91 -0.02 4.66 16 32 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.16 3.21 6.32 -2.91 -0.02 3.19 16 Total: -1.00 -60.54 282.43 5.42 -55.12 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.10 Total: 6.84 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 2.10 Total: -51.77 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.28 Total: -53.65 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.65 kcal Total: -60.54 5.42 -55.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.580 kcal (2) G-P(sol) polarization free energy of solvation -60.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds