Wall clock time and date at job start Mon Mar 30 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.24455 * 2 1 4 4 C 1.52732 * 109.21842 * 119.44394 * 2 1 3 5 5 C 1.53327 * 108.37617 * 171.36734 * 4 2 1 6 6 C 1.52731 * 108.37961 * 290.10596 * 5 4 2 7 7 H 1.09000 * 109.25440 * 290.81363 * 6 5 4 8 8 C 1.50704 * 109.25494 * 171.38491 * 6 5 4 9 9 H 1.07994 * 119.99762 * 275.06401 * 8 6 5 10 10 C 1.37872 * 119.99795 * 95.06267 * 8 6 5 11 11 N 1.31518 * 120.00508 * 5.74088 * 10 8 6 12 12 Si 1.86799 * 119.99770 * 185.73918 * 10 8 6 13 13 H 1.48504 * 109.47317 * 89.99954 * 12 10 8 14 14 H 1.48505 * 109.47384 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.47328 * 329.99787 * 12 10 8 16 16 C 1.50632 * 110.58967 * 51.09782 * 6 5 4 17 17 C 1.38892 * 117.74265 * 162.46735 * 16 6 5 18 18 C 1.38051 * 120.53808 * 179.63323 * 17 16 6 19 19 Cl 1.73601 * 120.13014 * 180.02562 * 18 17 16 20 20 C 1.38380 * 119.74238 * 0.05528 * 18 17 16 21 21 C 1.37915 * 119.75500 * 0.09211 * 20 18 17 22 22 C 1.37669 * 122.56527 * 342.30094 * 16 6 5 23 23 H 1.09007 * 109.47231 * 179.46417 * 1 2 3 24 24 H 1.08993 * 109.47732 * 299.46985 * 1 2 3 25 25 H 1.09001 * 109.46875 * 59.47428 * 1 2 3 26 26 H 1.09000 * 109.68209 * 291.08776 * 4 2 1 27 27 H 1.08999 * 109.68302 * 51.61114 * 4 2 1 28 28 H 1.08997 * 109.68499 * 49.83195 * 5 4 2 29 29 H 1.09001 * 109.68070 * 170.34775 * 5 4 2 30 30 H 0.96998 * 119.99983 * 179.97438 * 11 10 8 31 31 H 1.07998 * 119.73610 * 359.62287 * 17 16 6 32 32 H 1.07998 * 120.12655 * 180.36127 * 20 18 17 33 33 H 1.08005 * 119.71351 * 179.88996 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0292 0.0000 4 6 2.0327 -0.7089 1.2559 5 6 3.5503 -0.8907 1.1337 6 6 3.8250 -1.9287 0.0474 7 1 3.4996 -2.9087 0.3962 8 6 5.3042 -1.9696 -0.2381 9 1 5.7388 -1.2704 -0.9371 10 6 6.1025 -2.8998 0.3931 11 7 5.5594 -3.8228 1.1565 12 14 7.9557 -2.8490 0.1639 13 1 8.5606 -1.9865 1.2105 14 1 8.5063 -4.2237 0.2762 15 1 8.2737 -2.2967 -1.1774 16 6 3.0845 -1.5806 -1.2173 17 6 3.4991 -2.1858 -2.3967 18 6 2.8565 -1.9142 -3.5880 19 17 3.3831 -2.6772 -5.0557 20 6 1.7914 -1.0310 -3.6077 21 6 1.3811 -0.4273 -2.4376 22 6 2.0268 -0.6996 -1.2381 23 1 -0.3634 -1.0277 -0.0096 24 1 -0.3634 0.5055 0.8946 25 1 -0.3633 0.5220 -0.8853 26 1 1.8049 -0.1052 2.1344 27 1 1.5518 -1.6830 1.3451 28 1 4.0129 0.0577 0.8606 29 1 3.9563 -1.2370 2.0841 30 1 6.1212 -4.4773 1.6002 31 1 4.3310 -2.8743 -2.3818 32 1 1.2805 -0.8186 -4.5352 33 1 0.5508 0.2633 -2.4540 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:01 Heat of formation + Delta-G solvation = -12.710582 kcal Electronic energy + Delta-G solvation = -16202.509131 eV Core-core repulsion = 13638.405357 eV Total energy + Delta-G solvation = -2564.103773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.57633 -36.46933 -35.15251 -33.99570 -31.59267 -29.43758 -28.94443 -26.79632 -23.73548 -22.50905 -21.96282 -20.34467 -18.58523 -16.54683 -16.02964 -15.16208 -15.02908 -14.50896 -13.60139 -13.48219 -13.20552 -12.84521 -12.58707 -12.14999 -12.02704 -11.79658 -11.40249 -11.35492 -11.06383 -10.91597 -10.73714 -10.48994 -10.37711 -10.32220 -10.07646 -9.71770 -9.14259 -9.01860 -8.57321 -8.05315 -7.74503 -6.10314 -4.13369 1.81534 2.02116 2.67774 3.27170 3.34619 3.38321 4.27842 4.41518 5.13767 5.19376 5.24782 5.44751 5.49317 5.60563 5.87186 5.92399 5.95773 6.08252 6.16314 6.25618 6.39259 6.48370 6.56706 6.58725 6.65635 6.91030 6.92131 6.96164 7.08704 7.34516 7.53806 7.63340 7.79339 7.84236 8.31183 8.95034 9.50128 10.98038 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.010057 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.245786 B = 2783.521064 C = 4326.769791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.102 4.102 6 C 0.062 3.938 7 H 0.078 0.922 8 C -0.510 4.510 9 H 0.057 0.943 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.889 3.111 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.272 1.272 16 C -0.019 4.019 17 C -0.090 4.090 18 C -0.044 4.044 19 Cl -0.096 7.096 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.089 4.089 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.263 0.737 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 5.401 -4.460 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.140 4.140 6 C 0.044 3.956 7 H 0.096 0.904 8 C -0.548 4.548 9 H 0.075 0.925 10 C -0.135 4.135 11 N -0.528 5.528 12 Si 0.717 3.283 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.019 4.019 17 C -0.108 4.108 18 C -0.070 4.070 19 Cl -0.068 7.068 20 C -0.157 4.157 21 C -0.137 4.137 22 C -0.089 4.089 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.068 5.163 -4.479 10.574 hybrid contribution 1.117 -0.087 -0.342 1.172 sum -6.950 5.076 -4.822 9.865 Atomic orbital electron populations 1.21916 0.95342 1.01825 1.00992 1.19953 0.94684 0.98798 0.93013 0.90841 1.21721 0.98758 0.99733 0.95315 1.21663 0.91904 0.99776 1.00616 1.18012 0.94217 0.96544 0.86868 0.90404 1.21017 0.91423 1.16763 1.25615 0.92520 1.24964 0.98690 0.94778 0.95106 1.69897 1.35318 1.16169 1.31420 0.86626 0.85605 0.77311 0.78749 1.20559 1.21202 1.19724 1.20525 0.92208 0.91995 0.97175 1.21332 0.99476 1.00247 0.89766 1.20898 0.98972 0.99878 0.87260 1.98313 1.90423 1.81312 1.36706 1.20680 0.97536 0.98965 0.98543 1.20986 1.00272 1.00578 0.91832 1.19756 0.96271 0.98441 0.94420 0.92612 0.92860 0.92883 0.93017 0.92196 0.93457 0.92273 0.92719 0.84249 0.86348 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.69 37.16 0.32 -1.52 16 2 C -0.05 -0.73 2.77 -91.94 -0.25 -0.99 16 3 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 4 C -0.12 -2.03 5.25 -26.70 -0.14 -2.17 16 5 C -0.10 -2.14 5.24 -26.70 -0.14 -2.28 16 6 C 0.06 1.46 2.34 -93.09 -0.22 1.24 16 7 H 0.08 2.07 7.20 -51.93 -0.37 1.70 16 8 C -0.51 -13.31 6.88 -34.44 -0.24 -13.55 16 9 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 10 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 11 N -0.89 -24.75 12.75 55.43 0.71 -24.04 16 12 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C -0.02 -0.39 5.42 -104.62 -0.57 -0.96 16 17 C -0.09 -1.89 8.83 -39.41 -0.35 -2.24 16 18 C -0.04 -0.81 6.31 -39.60 -0.25 -1.06 16 19 Cl -0.10 -1.60 28.96 -51.86 -1.50 -3.11 16 20 C -0.14 -2.27 9.84 -39.65 -0.39 -2.66 16 21 C -0.12 -1.91 9.04 -39.45 -0.36 -2.27 16 22 C -0.09 -1.61 5.43 -104.61 -0.57 -2.18 16 23 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.61 6.41 -51.93 -0.33 0.27 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.14 3.17 7.27 -52.49 -0.38 2.79 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 1.58 6.34 -52.48 -0.33 1.25 16 LS Contribution 282.33 15.07 4.25 4.25 Total: -1.00 -26.56 282.33 -9.15 -35.71 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.34 Total: 0.32 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -3.24 Total: -28.95 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.71 Total: -24.04 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.50 Total: -3.11 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.56 -9.15 -35.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.998 kcal (2) G-P(sol) polarization free energy of solvation -26.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds