Wall clock time and date at job start Mon Mar 30 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.24455 * 2 1 4 4 C 1.52732 * 109.21842 * 119.44394 * 2 1 3 5 5 C 1.53327 * 108.37617 * 171.36734 * 4 2 1 6 6 C 1.52731 * 108.37961 * 290.10596 * 5 4 2 7 7 H 1.09000 * 109.25440 * 290.81363 * 6 5 4 8 8 C 1.50704 * 109.25494 * 171.38491 * 6 5 4 9 9 H 1.07994 * 119.99762 * 275.06401 * 8 6 5 10 10 C 1.37872 * 119.99795 * 95.06267 * 8 6 5 11 11 N 1.31518 * 120.00508 * 5.74088 * 10 8 6 12 12 Si 1.86799 * 119.99770 * 185.73918 * 10 8 6 13 13 H 1.48504 * 109.47317 * 89.99954 * 12 10 8 14 14 H 1.48505 * 109.47384 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.47328 * 329.99787 * 12 10 8 16 16 C 1.50632 * 110.58967 * 51.09782 * 6 5 4 17 17 C 1.38892 * 117.74265 * 162.46735 * 16 6 5 18 18 C 1.38051 * 120.53808 * 179.63323 * 17 16 6 19 19 Cl 1.73601 * 120.13014 * 180.02562 * 18 17 16 20 20 C 1.38380 * 119.74238 * 0.05528 * 18 17 16 21 21 C 1.37915 * 119.75500 * 0.09211 * 20 18 17 22 22 C 1.37669 * 122.56527 * 342.30094 * 16 6 5 23 23 H 1.09007 * 109.47231 * 179.46417 * 1 2 3 24 24 H 1.08993 * 109.47732 * 299.46985 * 1 2 3 25 25 H 1.09001 * 109.46875 * 59.47428 * 1 2 3 26 26 H 1.09000 * 109.68209 * 291.08776 * 4 2 1 27 27 H 1.08999 * 109.68302 * 51.61114 * 4 2 1 28 28 H 1.08997 * 109.68499 * 49.83195 * 5 4 2 29 29 H 1.09001 * 109.68070 * 170.34775 * 5 4 2 30 30 H 0.96998 * 119.99983 * 179.97438 * 11 10 8 31 31 H 1.07998 * 119.73610 * 359.62287 * 17 16 6 32 32 H 1.07998 * 120.12655 * 180.36127 * 20 18 17 33 33 H 1.08005 * 119.71351 * 179.88996 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0292 0.0000 4 6 2.0327 -0.7089 1.2559 5 6 3.5503 -0.8907 1.1337 6 6 3.8250 -1.9287 0.0474 7 1 3.4996 -2.9087 0.3962 8 6 5.3042 -1.9696 -0.2381 9 1 5.7388 -1.2704 -0.9371 10 6 6.1025 -2.8998 0.3931 11 7 5.5594 -3.8228 1.1565 12 14 7.9557 -2.8490 0.1639 13 1 8.5606 -1.9865 1.2105 14 1 8.5063 -4.2237 0.2762 15 1 8.2737 -2.2967 -1.1774 16 6 3.0845 -1.5806 -1.2173 17 6 3.4991 -2.1858 -2.3967 18 6 2.8565 -1.9142 -3.5880 19 17 3.3831 -2.6772 -5.0557 20 6 1.7914 -1.0310 -3.6077 21 6 1.3811 -0.4273 -2.4376 22 6 2.0268 -0.6996 -1.2381 23 1 -0.3634 -1.0277 -0.0096 24 1 -0.3634 0.5055 0.8946 25 1 -0.3633 0.5220 -0.8853 26 1 1.8049 -0.1052 2.1344 27 1 1.5518 -1.6830 1.3451 28 1 4.0129 0.0577 0.8606 29 1 3.9563 -1.2370 2.0841 30 1 6.1212 -4.4773 1.6002 31 1 4.3310 -2.8743 -2.3818 32 1 1.2805 -0.8186 -4.5352 33 1 0.5508 0.2633 -2.4540 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:00 Heat of formation + Delta-G solvation = -24.554589 kcal Electronic energy + Delta-G solvation = -16203.022725 eV Core-core repulsion = 13638.405357 eV Total energy + Delta-G solvation = -2564.617368 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03221 -37.88113 -36.60067 -35.66338 -33.41231 -30.90661 -30.34117 -28.44195 -25.42981 -23.95827 -23.44944 -21.85076 -20.08723 -18.50606 -17.57160 -16.60172 -16.53408 -16.26955 -15.02631 -14.84195 -14.75172 -14.41447 -14.17939 -13.63272 -13.46518 -13.31774 -12.88747 -12.75638 -12.64952 -12.49132 -12.39780 -12.13471 -11.83847 -11.79020 -11.58086 -11.38408 -10.93234 -10.69802 -10.55416 -9.55049 -9.22624 -8.15679 -6.23964 0.37630 0.57613 1.26893 1.37194 1.38817 1.48317 2.39493 2.86227 3.13638 3.87963 3.93607 4.13833 4.19551 4.33566 4.50026 4.53426 4.69072 4.76216 4.86217 4.94676 5.04812 5.12184 5.16794 5.18801 5.32392 5.37931 5.43372 5.50947 5.53700 5.63409 5.76075 5.86348 6.02109 6.13998 6.36654 6.89973 7.41142 8.92042 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.010057 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.245786 B = 2783.521064 C = 4326.769791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 H 0.088 0.912 4 C -0.110 4.110 5 C -0.097 4.097 6 C 0.063 3.937 7 H 0.035 0.965 8 C -0.514 4.514 9 H 0.045 0.955 10 C 0.018 3.982 11 N -0.924 5.924 12 Si 0.946 3.054 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.271 1.271 16 C -0.051 4.051 17 C -0.115 4.115 18 C -0.051 4.051 19 Cl -0.084 7.084 20 C -0.126 4.126 21 C -0.106 4.106 22 C -0.090 4.090 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.105 0.895 32 H 0.154 0.846 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 7.640 -5.615 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 H 0.106 0.894 4 C -0.148 4.148 5 C -0.135 4.135 6 C 0.044 3.956 7 H 0.053 0.947 8 C -0.552 4.552 9 H 0.064 0.936 10 C -0.181 4.181 11 N -0.563 5.563 12 Si 0.772 3.228 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.195 1.195 16 C -0.051 4.051 17 C -0.133 4.133 18 C -0.077 4.077 19 Cl -0.055 7.055 20 C -0.145 4.145 21 C -0.124 4.124 22 C -0.090 4.090 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.171 0.829 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.078 7.410 -5.641 13.722 hybrid contribution 1.705 -0.775 -0.064 1.874 sum -8.373 6.634 -5.705 12.111 Atomic orbital electron populations 1.21876 0.92299 1.02041 1.03202 1.20034 0.97077 0.98632 0.90649 0.89404 1.21644 0.95248 1.00086 0.97780 1.21494 0.95213 0.98518 0.98252 1.17828 0.93225 0.95362 0.89148 0.94709 1.21262 0.93237 1.16062 1.24663 0.93644 1.25654 1.02570 0.94686 0.95202 1.70021 1.36510 1.17012 1.32755 0.85736 0.81058 0.77340 0.78699 1.19814 1.20937 1.19543 1.20326 0.94309 0.94656 0.95853 1.21113 0.99808 1.00977 0.91450 1.20980 0.99483 1.00457 0.86809 1.98311 1.90481 1.81248 1.35499 1.21124 0.96076 0.97042 1.00245 1.21414 1.00404 1.00153 0.90417 1.20069 0.95007 0.97256 0.96696 0.93391 0.90866 0.90548 0.90298 0.93327 0.93574 0.94869 0.92856 0.87667 0.82860 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.69 71.98 0.63 -2.26 16 2 C -0.05 -1.31 2.77 -11.65 -0.03 -1.35 16 3 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 4 C -0.11 -3.69 5.25 30.61 0.16 -3.53 16 5 C -0.10 -4.20 5.24 30.61 0.16 -4.04 16 6 C 0.06 3.13 2.34 -12.40 -0.03 3.10 16 7 H 0.03 2.00 7.20 -2.39 -0.02 1.99 16 8 C -0.51 -28.26 6.88 25.60 0.18 -28.08 16 9 H 0.05 2.53 7.82 -2.91 -0.02 2.51 16 10 C 0.02 0.98 5.45 84.65 0.46 1.44 16 11 N -0.92 -54.11 12.75 21.45 0.27 -53.84 16 12 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 C -0.05 -2.21 5.42 -19.86 -0.11 -2.32 16 17 C -0.11 -4.98 8.83 22.38 0.20 -4.79 16 18 C -0.05 -1.83 6.31 22.26 0.14 -1.69 16 19 Cl -0.08 -2.72 28.96 -2.72 -0.08 -2.80 16 20 C -0.13 -3.70 9.84 22.23 0.22 -3.48 16 21 C -0.11 -2.97 9.04 22.36 0.20 -2.77 16 22 C -0.09 -3.10 5.43 -19.86 -0.11 -3.21 16 23 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.27 6.41 -2.39 -0.02 1.25 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 28 H 0.05 1.96 8.08 -2.39 -0.02 1.95 16 29 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.11 5.17 7.27 -2.91 -0.02 5.14 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.16 3.19 6.34 -2.91 -0.02 3.17 16 Total: -1.00 -61.08 282.33 5.38 -55.70 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.10 Total: 7.64 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 2.07 Total: -52.97 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.27 Total: -53.84 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.08 Total: -2.80 kcal Total: -61.08 5.38 -55.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.144 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds