Wall clock time and date at job start Mon Mar 30 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.24592 * 2 1 4 4 C 1.52729 * 109.24984 * 119.42675 * 2 1 3 5 5 C 1.53333 * 108.39577 * 171.33338 * 4 2 1 6 6 C 1.52737 * 108.37590 * 290.14036 * 5 4 2 7 7 H 1.09001 * 109.25597 * 290.87903 * 6 5 4 8 8 C 1.50701 * 109.25506 * 171.44179 * 6 5 4 9 9 H 1.08005 * 119.99666 * 274.05079 * 8 6 5 10 10 C 1.37876 * 119.99665 * 94.04862 * 8 6 5 11 11 N 1.31516 * 119.99427 * 184.80447 * 10 8 6 12 12 Si 1.86790 * 120.00382 * 4.80705 * 10 8 6 13 13 H 1.48500 * 109.47304 * 84.88262 * 12 10 8 14 14 H 1.48499 * 109.47277 * 204.88709 * 12 10 8 15 15 H 1.48505 * 109.47070 * 324.88293 * 12 10 8 16 16 C 1.50633 * 110.57612 * 51.15865 * 6 5 4 17 17 C 1.38920 * 117.74243 * 162.47880 * 16 6 5 18 18 C 1.37944 * 120.57580 * 179.43464 * 17 16 6 19 19 C 1.38249 * 119.77561 * 0.02562 * 18 17 16 20 20 C 1.38048 * 119.76399 * 0.12993 * 19 18 17 21 21 Cl 1.73596 * 119.73965 * 179.97438 * 20 19 18 22 22 C 1.37641 * 122.56296 * 342.14868 * 16 6 5 23 23 H 1.08996 * 109.47264 * 150.31672 * 1 2 3 24 24 H 1.09004 * 109.47112 * 30.32347 * 1 2 3 25 25 H 1.08996 * 109.47107 * 270.32309 * 1 2 3 26 26 H 1.08994 * 109.68055 * 291.05591 * 4 2 1 27 27 H 1.09004 * 109.68128 * 51.61000 * 4 2 1 28 28 H 1.08997 * 109.68280 * 170.42174 * 5 4 2 29 29 H 1.09000 * 109.70973 * 49.87842 * 5 4 2 30 30 H 0.97003 * 120.00080 * 180.02562 * 11 10 8 31 31 H 1.08002 * 119.71496 * 359.41769 * 17 16 6 32 32 H 1.07989 * 120.11205 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.11162 * 180.15313 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0335 -0.7084 1.2559 5 6 3.5510 -0.8908 1.1330 6 6 3.8248 -1.9289 0.0466 7 1 3.4981 -2.9087 0.3950 8 6 5.3040 -1.9715 -0.2386 9 1 5.7369 -1.2834 -0.9496 10 6 6.1045 -2.8890 0.4083 11 7 7.4075 -2.8647 0.2315 12 14 5.3385 -4.1663 1.5355 13 1 4.8921 -5.3322 0.7314 14 1 6.3427 -4.6099 2.5355 15 1 4.1715 -3.5722 2.2360 16 6 3.0850 -1.5793 -1.2181 17 6 3.4989 -2.1848 -2.3979 18 6 2.8554 -1.9159 -3.5880 19 6 1.7894 -1.0358 -3.6084 20 6 1.3781 -0.4302 -2.4380 21 17 0.0399 0.6752 -2.4646 22 6 2.0267 -0.6995 -1.2382 23 1 -0.3633 -0.8928 -0.5089 24 1 -0.3633 0.8871 -0.5189 25 1 -0.3633 0.0058 1.0276 26 1 1.8065 -0.1042 2.1341 27 1 1.5528 -1.6826 1.3455 28 1 3.9572 -1.2379 2.0831 29 1 4.0144 0.0573 0.8601 30 1 7.9708 -3.5104 0.6862 31 1 4.3320 -2.8720 -2.3833 32 1 3.1831 -2.3911 -4.5006 33 1 1.2800 -0.8232 -4.5368 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261012914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:08 Heat of formation + Delta-G solvation = 4.570319 kcal Electronic energy + Delta-G solvation = -16444.028831 eV Core-core repulsion = 13880.674413 eV Total energy + Delta-G solvation = -2563.354417 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75331 -36.37892 -35.83571 -33.78754 -31.67524 -29.76028 -29.14288 -27.10409 -23.50643 -22.42383 -22.24987 -20.36711 -18.73195 -16.98717 -16.18548 -15.29937 -15.13357 -14.35295 -14.05235 -13.62145 -13.39252 -13.10517 -12.72557 -12.36545 -12.10446 -12.04847 -11.55598 -11.46036 -11.09586 -10.95494 -10.73147 -10.57093 -10.36715 -9.98367 -9.90925 -9.72747 -9.20280 -9.14827 -8.65924 -8.09493 -7.89954 -6.16110 -4.16053 1.73658 1.87394 2.50444 3.22407 3.31991 3.32852 4.21625 4.33885 5.02994 5.10757 5.20039 5.39798 5.45883 5.64015 5.80916 5.85514 5.93257 6.00285 6.07620 6.22071 6.27838 6.36034 6.41585 6.51080 6.53839 6.68386 6.76778 6.81584 6.93201 7.10877 7.22382 7.42524 7.52301 7.68448 8.43157 8.89268 9.45153 10.96536 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.008121 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.131266 B = 3446.994457 C = 4058.660992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.046 4.046 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.045 3.955 7 H 0.047 0.953 8 C -0.509 4.509 9 H 0.076 0.924 10 C 0.074 3.926 11 N -0.896 5.896 12 Si 0.871 3.129 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.262 1.262 16 C -0.023 4.023 17 C -0.092 4.092 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.040 4.040 21 Cl -0.088 7.088 22 C -0.077 4.077 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 3.458 -2.907 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.064 4.064 3 H 0.096 0.904 4 C -0.155 4.155 5 C -0.149 4.149 6 C 0.026 3.974 7 H 0.065 0.935 8 C -0.546 4.546 9 H 0.094 0.906 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.698 3.302 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.187 1.187 16 C -0.024 4.024 17 C -0.110 4.110 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.066 4.066 21 Cl -0.060 7.060 22 C -0.078 4.078 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.541 3.465 -2.859 13.321 hybrid contribution -0.301 -0.629 0.479 0.846 sum -12.842 2.836 -2.381 13.365 Atomic orbital electron populations 1.22522 0.94918 1.02804 1.00971 1.19966 0.95160 0.98882 0.92368 0.90446 1.21756 0.98208 0.99818 0.95746 1.21839 0.92525 1.00730 0.99820 1.18243 0.95722 0.94968 0.88449 0.93496 1.20892 0.88983 1.19083 1.25691 0.90558 1.25038 0.94649 0.97215 0.95908 1.69892 1.03592 1.36393 1.43409 0.86955 0.79479 0.82433 0.81362 1.20060 1.21425 1.18715 1.20215 0.91827 0.92779 0.97551 1.21563 0.98838 0.99252 0.91303 1.21023 0.96006 0.98760 0.98474 1.20758 0.98873 0.99138 0.96318 1.20877 0.93015 0.97453 0.95266 1.98278 1.46513 1.63057 1.98105 1.19547 0.96094 0.98977 0.93183 0.92668 0.91165 0.93573 0.92491 0.92374 0.92490 0.92105 0.92503 0.84396 0.85977 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 7.77 37.16 0.29 -1.90 16 2 C -0.05 -0.75 2.53 -91.94 -0.23 -0.98 16 3 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.12 -1.99 5.06 -26.70 -0.14 -2.13 16 5 C -0.11 -2.26 5.24 -26.69 -0.14 -2.40 16 6 C 0.04 1.00 1.81 -93.09 -0.17 0.83 16 7 H 0.05 1.08 5.30 -51.93 -0.28 0.80 16 8 C -0.51 -13.39 7.43 -34.44 -0.26 -13.65 16 9 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -26.20 13.96 55.43 0.77 -25.42 16 12 Si 0.87 20.49 26.90 -169.99 -4.57 15.92 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.26 -5.89 6.64 56.52 0.38 -5.51 16 16 C -0.02 -0.48 5.42 -104.62 -0.57 -1.04 16 17 C -0.09 -1.79 9.04 -39.44 -0.36 -2.15 16 18 C -0.12 -2.05 10.05 -39.68 -0.40 -2.45 16 19 C -0.13 -2.08 9.82 -39.65 -0.39 -2.47 16 20 C -0.04 -0.67 5.95 -39.36 -0.23 -0.90 16 21 Cl -0.09 -1.26 23.56 -51.86 -1.22 -2.48 16 22 C -0.08 -1.41 5.30 -104.58 -0.55 -1.97 16 23 H 0.05 0.81 7.24 -51.93 -0.38 0.43 16 24 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 25 H 0.05 0.59 7.82 -51.93 -0.41 0.18 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 29 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.14 2.85 7.26 -52.49 -0.38 2.47 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -27.50 271.95 -8.40 -35.91 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.24 Total: 1.26 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -3.24 Total: -29.28 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.77 Total: -25.42 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.57 Total: 15.92 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.22 Total: -2.48 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.50 -8.40 -35.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.476 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds