Wall clock time and date at job start Mon Mar 30 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.24592 * 2 1 4 4 C 1.52729 * 109.24984 * 119.42675 * 2 1 3 5 5 C 1.53333 * 108.39577 * 171.33338 * 4 2 1 6 6 C 1.52737 * 108.37590 * 290.14036 * 5 4 2 7 7 H 1.09001 * 109.25597 * 290.87903 * 6 5 4 8 8 C 1.50701 * 109.25506 * 171.44179 * 6 5 4 9 9 H 1.08005 * 119.99666 * 274.05079 * 8 6 5 10 10 C 1.37876 * 119.99665 * 94.04862 * 8 6 5 11 11 N 1.31516 * 119.99427 * 184.80447 * 10 8 6 12 12 Si 1.86790 * 120.00382 * 4.80705 * 10 8 6 13 13 H 1.48500 * 109.47304 * 84.88262 * 12 10 8 14 14 H 1.48499 * 109.47277 * 204.88709 * 12 10 8 15 15 H 1.48505 * 109.47070 * 324.88293 * 12 10 8 16 16 C 1.50633 * 110.57612 * 51.15865 * 6 5 4 17 17 C 1.38920 * 117.74243 * 162.47880 * 16 6 5 18 18 C 1.37944 * 120.57580 * 179.43464 * 17 16 6 19 19 C 1.38249 * 119.77561 * 0.02562 * 18 17 16 20 20 C 1.38048 * 119.76399 * 0.12993 * 19 18 17 21 21 Cl 1.73596 * 119.73965 * 179.97438 * 20 19 18 22 22 C 1.37641 * 122.56296 * 342.14868 * 16 6 5 23 23 H 1.08996 * 109.47264 * 150.31672 * 1 2 3 24 24 H 1.09004 * 109.47112 * 30.32347 * 1 2 3 25 25 H 1.08996 * 109.47107 * 270.32309 * 1 2 3 26 26 H 1.08994 * 109.68055 * 291.05591 * 4 2 1 27 27 H 1.09004 * 109.68128 * 51.61000 * 4 2 1 28 28 H 1.08997 * 109.68280 * 170.42174 * 5 4 2 29 29 H 1.09000 * 109.70973 * 49.87842 * 5 4 2 30 30 H 0.97003 * 120.00080 * 180.02562 * 11 10 8 31 31 H 1.08002 * 119.71496 * 359.41769 * 17 16 6 32 32 H 1.07989 * 120.11205 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.11162 * 180.15313 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0335 -0.7084 1.2559 5 6 3.5510 -0.8908 1.1330 6 6 3.8248 -1.9289 0.0466 7 1 3.4981 -2.9087 0.3950 8 6 5.3040 -1.9715 -0.2386 9 1 5.7369 -1.2834 -0.9496 10 6 6.1045 -2.8890 0.4083 11 7 7.4075 -2.8647 0.2315 12 14 5.3385 -4.1663 1.5355 13 1 4.8921 -5.3322 0.7314 14 1 6.3427 -4.6099 2.5355 15 1 4.1715 -3.5722 2.2360 16 6 3.0850 -1.5793 -1.2181 17 6 3.4989 -2.1848 -2.3979 18 6 2.8554 -1.9159 -3.5880 19 6 1.7894 -1.0358 -3.6084 20 6 1.3781 -0.4302 -2.4380 21 17 0.0399 0.6752 -2.4646 22 6 2.0267 -0.6995 -1.2382 23 1 -0.3633 -0.8928 -0.5089 24 1 -0.3633 0.8871 -0.5189 25 1 -0.3633 0.0058 1.0276 26 1 1.8065 -0.1042 2.1341 27 1 1.5528 -1.6826 1.3455 28 1 3.9572 -1.2379 2.0831 29 1 4.0144 0.0573 0.8601 30 1 7.9708 -3.5104 0.6862 31 1 4.3320 -2.8720 -2.3833 32 1 3.1831 -2.3911 -4.5006 33 1 1.2800 -0.8232 -4.5368 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261012914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:07 Heat of formation + Delta-G solvation = -8.949038 kcal Electronic energy + Delta-G solvation = -16444.615074 eV Core-core repulsion = 13880.674413 eV Total energy + Delta-G solvation = -2563.940660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16664 -37.69040 -37.18465 -35.48412 -33.54050 -31.17107 -30.49630 -28.75150 -25.17797 -23.84300 -23.67475 -21.88213 -20.21278 -19.01311 -17.61307 -16.67278 -16.52850 -16.16505 -15.39194 -15.13982 -14.81330 -14.62897 -14.42015 -13.86841 -13.54571 -13.45071 -12.92328 -12.89430 -12.71912 -12.48385 -12.19619 -12.07848 -11.90195 -11.76718 -11.44788 -11.29675 -11.00794 -10.69684 -10.41503 -9.44476 -9.37576 -8.28587 -6.31456 0.34605 0.48504 1.22775 1.34323 1.36203 1.46121 2.34041 2.80214 3.06610 3.74696 3.83042 4.09161 4.15836 4.30744 4.42176 4.52168 4.56244 4.64337 4.67419 4.88029 4.89518 4.98920 5.04611 5.11289 5.17988 5.30330 5.35039 5.42087 5.47248 5.54435 5.62790 5.73976 5.97596 6.04333 6.33354 6.74107 7.32325 8.87971 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.008121 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.131266 B = 3446.994457 C = 4058.660992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.110 4.110 6 C 0.045 3.955 7 H 0.042 0.958 8 C -0.500 4.500 9 H 0.031 0.969 10 C 0.017 3.983 11 N -0.947 5.947 12 Si 0.932 3.068 13 H -0.268 1.268 14 H -0.288 1.288 15 H -0.242 1.242 16 C -0.054 4.054 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.045 4.045 21 Cl -0.061 7.061 22 C -0.084 4.084 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 3.918 -2.965 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.148 4.148 6 C 0.027 3.973 7 H 0.060 0.940 8 C -0.538 4.538 9 H 0.049 0.951 10 C -0.180 4.180 11 N -0.587 5.587 12 Si 0.756 3.244 13 H -0.193 1.193 14 H -0.215 1.215 15 H -0.165 1.165 16 C -0.055 4.055 17 C -0.135 4.135 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.071 4.071 21 Cl -0.032 7.032 22 C -0.085 4.085 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.168 0.832 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.807 3.938 -2.921 16.550 hybrid contribution 0.683 -0.658 0.358 1.014 sum -15.124 3.280 -2.562 15.686 Atomic orbital electron populations 1.22445 0.92742 1.02911 1.02349 1.20043 0.96858 0.98502 0.91162 0.90233 1.21700 0.94982 1.00685 0.97310 1.21719 0.95530 0.99178 0.98401 1.18152 0.93077 0.95600 0.90490 0.93997 1.21035 0.91495 1.17451 1.23842 0.95098 1.25838 0.94879 0.99476 0.97809 1.70043 1.05272 1.37898 1.45501 0.85956 0.79150 0.79833 0.79444 1.19331 1.21453 1.16542 1.20068 0.93549 0.95063 0.96778 1.21486 0.99187 0.99959 0.92837 1.21278 0.95613 0.98502 0.98184 1.21146 0.97978 0.97582 0.97364 1.21002 0.93525 0.97620 0.94946 1.98286 1.44878 1.61972 1.98059 1.19713 0.95506 0.98327 0.94906 0.93137 0.90324 0.91741 0.89739 0.92106 0.93193 0.93458 0.92551 0.87053 0.83170 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 7.77 71.98 0.56 -3.06 16 2 C -0.05 -1.44 2.53 -11.65 -0.03 -1.47 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.11 -3.45 5.06 30.62 0.15 -3.29 16 5 C -0.11 -4.45 5.24 30.62 0.16 -4.29 16 6 C 0.05 2.07 1.81 -12.39 -0.02 2.05 16 7 H 0.04 1.93 5.30 -2.39 -0.01 1.92 16 8 C -0.50 -27.69 7.43 25.60 0.19 -27.50 16 9 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 10 C 0.02 0.97 5.47 84.65 0.46 1.44 16 11 N -0.95 -58.08 13.96 21.45 0.30 -57.78 16 12 Si 0.93 43.02 26.90 68.60 1.85 44.87 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.24 -10.26 6.64 99.48 0.66 -9.60 16 16 C -0.05 -2.24 5.42 -19.86 -0.11 -2.34 16 17 C -0.12 -4.65 9.04 22.36 0.20 -4.45 16 18 C -0.12 -3.71 10.05 22.20 0.22 -3.48 16 19 C -0.12 -3.48 9.82 22.23 0.22 -3.27 16 20 C -0.04 -1.37 5.95 22.41 0.13 -1.23 16 21 Cl -0.06 -1.52 23.56 -2.72 -0.06 -1.58 16 22 C -0.08 -2.94 5.30 -19.84 -0.11 -3.05 16 23 H 0.05 1.30 7.24 -2.39 -0.02 1.28 16 24 H 0.08 1.79 5.37 -2.38 -0.01 1.77 16 25 H 0.06 1.36 7.82 -2.39 -0.02 1.35 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 28 H 0.05 2.04 7.87 -2.39 -0.02 2.02 16 29 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.11 4.92 7.26 -2.91 -0.02 4.90 16 32 H 0.15 3.78 8.06 -2.92 -0.02 3.75 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -61.87 271.95 5.18 -56.69 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.05 Total: 11.76 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 2.04 Total: -53.96 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.30 Total: -57.78 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.85 Total: 44.87 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.06 Total: -1.58 kcal Total: -61.87 5.18 -56.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -61.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds