Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76200 * 99.99817 * 2 1 4 4 N 1.32570 * 119.27710 * 359.97438 * 3 2 1 5 5 C 1.32096 * 120.55721 * 180.11191 * 4 3 2 6 6 C 1.39066 * 119.41453 * 359.95858 * 5 4 3 7 7 C 1.37824 * 118.59059 * 359.85030 * 6 5 4 8 8 N 1.32361 * 119.27208 * 179.97438 * 3 2 1 9 9 C 1.50456 * 122.57807 * 180.62791 * 7 6 5 10 10 C 1.52718 * 110.60086 * 342.37562 * 9 7 6 11 11 C 1.53305 * 108.55342 * 50.73978 * 10 9 7 12 12 C 1.50368 * 118.64778 * 179.78213 * 6 5 4 13 13 H 1.08995 * 109.30768 * 282.75856 * 12 6 5 14 14 C 1.50703 * 109.30220 * 42.14912 * 12 6 5 15 15 H 1.07995 * 119.99796 * 36.07411 * 14 12 6 16 16 C 1.37873 * 120.00108 * 216.07618 * 14 12 6 17 17 N 1.31518 * 120.00237 * 5.60384 * 16 14 12 18 18 Si 1.86801 * 120.00129 * 185.61279 * 16 14 12 19 19 H 1.48493 * 109.47539 * 89.99397 * 18 16 14 20 20 H 1.48498 * 109.47038 * 209.99737 * 18 16 14 21 21 H 1.48501 * 109.46703 * 329.99447 * 18 16 14 22 22 H 1.08995 * 109.47182 * 299.99673 * 1 2 3 23 23 H 1.08999 * 109.47447 * 60.00414 * 1 2 3 24 24 H 1.09010 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.29197 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.31141 * 102.54173 * 9 7 6 27 27 H 1.09002 * 109.31015 * 222.13450 * 9 7 6 28 28 H 1.09007 * 109.44285 * 291.11927 * 10 9 7 29 29 H 1.08999 * 109.77603 * 170.56235 * 10 9 7 30 30 H 1.09004 * 109.63424 * 170.69918 * 11 10 9 31 31 H 1.09003 * 109.63170 * 50.29920 * 11 10 9 32 32 H 0.96994 * 120.00231 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0897 2.5745 -0.0005 5 6 1.2899 3.8802 -0.0028 6 6 2.5908 4.3717 -0.0037 7 6 3.6355 3.4727 0.0009 8 7 3.3653 2.1721 0.0005 9 6 5.0765 3.9053 0.0142 10 6 5.2028 5.3664 -0.4115 11 6 4.2242 6.2033 0.4204 12 6 2.7988 5.8609 -0.0113 13 1 2.6249 6.2439 -1.0168 14 6 1.8221 6.5051 0.9386 15 1 1.5553 6.0069 1.8589 16 6 1.2692 7.7305 0.6327 17 7 1.5072 8.2862 -0.5353 18 14 0.1823 8.6017 1.8774 19 1 1.0189 9.4731 2.7410 20 1 -0.8221 9.4301 1.1633 21 1 -0.5140 7.5942 2.7173 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.4507 4.5600 -0.0036 26 1 5.4779 3.7908 1.0212 27 1 5.6465 3.2811 -0.6740 28 1 4.9562 5.4588 -1.4693 29 1 6.2212 5.7143 -0.2384 30 1 4.4134 7.2634 0.2515 31 1 4.3521 5.9724 1.4780 32 1 1.1185 9.1485 -0.7503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = 21.267690 kcal Electronic energy + Delta-G solvation = -16038.576699 eV Core-core repulsion = 13510.282791 eV Total energy + Delta-G solvation = -2528.293907 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50740 -36.48651 -33.89433 -32.35914 -30.79710 -29.29012 -28.71796 -25.30097 -24.10210 -23.23942 -21.43093 -19.35977 -17.46232 -17.12453 -16.32001 -15.14384 -14.83496 -14.64182 -14.07491 -13.72936 -13.27154 -13.06149 -12.86436 -12.75262 -12.55675 -12.09636 -11.66775 -11.37313 -11.12685 -10.87654 -10.63809 -10.46437 -10.30589 -10.03765 -9.81977 -9.49534 -9.25450 -8.93396 -8.62994 -8.50708 -7.31819 -6.21904 -4.27341 1.52709 1.61069 1.70099 2.40689 3.20121 3.28108 3.30977 4.23677 4.33954 4.63525 5.05062 5.16876 5.24382 5.32799 5.34914 5.58670 5.66055 5.73456 5.93854 6.07042 6.14905 6.23964 6.34447 6.48075 6.56576 6.80956 7.00562 7.14377 7.35519 7.55613 7.64466 7.73069 8.14531 8.49043 8.81271 9.37679 10.85796 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.007283 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.827412 B = 3843.749335 C = 4801.110389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.036 6.036 3 C 0.264 3.736 4 N -0.533 5.533 5 C 0.169 3.831 6 C -0.128 4.128 7 C 0.160 3.840 8 N -0.509 5.509 9 C -0.061 4.061 10 C -0.123 4.123 11 C -0.104 4.104 12 C 0.070 3.930 13 H 0.082 0.918 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.070 3.930 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.178 0.822 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -9.368 -0.007 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.196 5.804 3 C -0.113 4.113 4 N -0.250 5.250 5 C 0.000 4.000 6 C -0.134 4.134 7 C 0.014 3.986 8 N -0.226 5.226 9 C -0.099 4.099 10 C -0.161 4.161 11 C -0.142 4.142 12 C 0.051 3.949 13 H 0.100 0.900 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.133 4.133 17 N -0.524 5.524 18 Si 0.720 3.280 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.195 0.805 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.088 -11.191 -0.121 11.385 hybrid contribution -1.349 2.587 0.700 3.000 sum 0.739 -8.605 0.579 8.656 Atomic orbital electron populations 1.23428 0.94498 1.05450 1.07096 1.85360 1.06580 0.95884 1.92610 1.24333 0.87656 0.99492 0.99773 1.68664 1.34442 1.05020 1.16899 1.23463 0.97827 0.89707 0.89004 1.22041 0.93492 1.01176 0.96729 1.21362 0.96901 0.87519 0.92793 1.68245 1.21298 1.17121 1.15940 1.20268 0.89838 0.97307 1.02437 1.21689 0.99944 0.93631 1.00867 1.21704 0.95434 0.99044 0.97999 1.17885 0.93054 0.83706 1.00274 0.90020 1.20984 1.25583 1.03910 1.05096 0.92536 1.24969 0.95898 0.97375 0.95071 1.69884 1.44686 1.17502 1.20350 0.86578 0.80240 0.79815 0.81381 1.20417 1.21080 1.19740 0.89393 0.89392 0.88341 0.80545 0.90179 0.90494 0.92041 0.92022 0.91814 0.93291 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.62 101.05 0.97 -0.69 16 2 S -0.04 -0.55 22.90 -107.50 -2.46 -3.01 16 3 C 0.26 5.19 7.85 -91.00 -0.71 4.48 16 4 N -0.53 -10.71 9.15 -13.40 -0.12 -10.83 16 5 C 0.17 3.58 10.33 -17.13 -0.18 3.40 16 6 C -0.13 -2.75 5.41 -104.63 -0.57 -3.32 16 7 C 0.16 3.22 6.63 -82.43 -0.55 2.68 16 8 N -0.51 -10.37 10.28 -9.86 -0.10 -10.48 16 9 C -0.06 -1.02 5.94 -28.15 -0.17 -1.18 16 10 C -0.12 -2.07 5.97 -26.72 -0.16 -2.23 16 11 C -0.10 -2.11 5.23 -26.67 -0.14 -2.25 16 12 C 0.07 1.61 2.37 -93.18 -0.22 1.39 16 13 H 0.08 2.09 7.20 -51.93 -0.37 1.71 16 14 C -0.52 -12.98 6.99 -34.44 -0.24 -13.22 16 15 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 16 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 17 N -0.89 -23.72 12.75 55.43 0.71 -23.01 16 18 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H 0.09 1.13 8.11 -51.92 -0.42 0.71 16 23 H 0.09 1.12 8.11 -51.92 -0.42 0.70 16 24 H 0.10 0.90 8.14 -51.91 -0.42 0.48 16 25 H 0.18 3.72 7.38 -52.48 -0.39 3.33 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.05 8.10 -51.92 -0.42 0.63 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 281.55 15.07 4.24 4.24 Total: -1.00 -27.33 281.55 -8.92 -36.24 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.10 Total: 1.08 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.06 Total: -9.25 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.48 Total: -44.32 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.46 Total: -3.01 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.33 -8.92 -36.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.512 kcal (2) G-P(sol) polarization free energy of solvation -27.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds