Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76200 * 99.99817 * 2 1 4 4 N 1.32570 * 119.27710 * 359.97438 * 3 2 1 5 5 C 1.32096 * 120.55721 * 180.11191 * 4 3 2 6 6 C 1.39066 * 119.41453 * 359.95858 * 5 4 3 7 7 C 1.37824 * 118.59059 * 359.85030 * 6 5 4 8 8 N 1.32361 * 119.27208 * 179.97438 * 3 2 1 9 9 C 1.50456 * 122.57807 * 180.62791 * 7 6 5 10 10 C 1.52718 * 110.60086 * 342.37562 * 9 7 6 11 11 C 1.53305 * 108.55342 * 50.73978 * 10 9 7 12 12 C 1.50368 * 118.64778 * 179.78213 * 6 5 4 13 13 H 1.08995 * 109.30768 * 282.75856 * 12 6 5 14 14 C 1.50703 * 109.30220 * 42.14912 * 12 6 5 15 15 H 1.07995 * 119.99796 * 36.07411 * 14 12 6 16 16 C 1.37873 * 120.00108 * 216.07618 * 14 12 6 17 17 N 1.31518 * 120.00237 * 5.60384 * 16 14 12 18 18 Si 1.86801 * 120.00129 * 185.61279 * 16 14 12 19 19 H 1.48493 * 109.47539 * 89.99397 * 18 16 14 20 20 H 1.48498 * 109.47038 * 209.99737 * 18 16 14 21 21 H 1.48501 * 109.46703 * 329.99447 * 18 16 14 22 22 H 1.08995 * 109.47182 * 299.99673 * 1 2 3 23 23 H 1.08999 * 109.47447 * 60.00414 * 1 2 3 24 24 H 1.09010 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.29197 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.31141 * 102.54173 * 9 7 6 27 27 H 1.09002 * 109.31015 * 222.13450 * 9 7 6 28 28 H 1.09007 * 109.44285 * 291.11927 * 10 9 7 29 29 H 1.08999 * 109.77603 * 170.56235 * 10 9 7 30 30 H 1.09004 * 109.63424 * 170.69918 * 11 10 9 31 31 H 1.09003 * 109.63170 * 50.29920 * 11 10 9 32 32 H 0.96994 * 120.00231 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0897 2.5745 -0.0005 5 6 1.2899 3.8802 -0.0028 6 6 2.5908 4.3717 -0.0037 7 6 3.6355 3.4727 0.0009 8 7 3.3653 2.1721 0.0005 9 6 5.0765 3.9053 0.0142 10 6 5.2028 5.3664 -0.4115 11 6 4.2242 6.2033 0.4204 12 6 2.7988 5.8609 -0.0113 13 1 2.6249 6.2439 -1.0168 14 6 1.8221 6.5051 0.9386 15 1 1.5553 6.0069 1.8589 16 6 1.2692 7.7305 0.6327 17 7 1.5072 8.2862 -0.5353 18 14 0.1823 8.6017 1.8774 19 1 1.0189 9.4731 2.7410 20 1 -0.8221 9.4301 1.1633 21 1 -0.5140 7.5942 2.7173 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.4507 4.5600 -0.0036 26 1 5.4779 3.7908 1.0212 27 1 5.6465 3.2811 -0.6740 28 1 4.9562 5.4588 -1.4693 29 1 6.2212 5.7143 -0.2384 30 1 4.4134 7.2634 0.2515 31 1 4.3521 5.9724 1.4780 32 1 1.1185 9.1485 -0.7503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = 6.784460 kcal Electronic energy + Delta-G solvation = -16039.204739 eV Core-core repulsion = 13510.282791 eV Total energy + Delta-G solvation = -2528.921947 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.07182 -38.06763 -35.57068 -34.13907 -32.34053 -30.94212 -29.76345 -27.09779 -25.70654 -24.78604 -23.08302 -20.92724 -18.94040 -18.77566 -18.11719 -16.86800 -16.34462 -16.15378 -15.60242 -15.07095 -14.71610 -14.56405 -14.32194 -14.16896 -14.02235 -13.42262 -13.27592 -12.97107 -12.89329 -12.48524 -12.32550 -12.01358 -11.80603 -11.63012 -11.37108 -11.16147 -10.92679 -10.72057 -10.36066 -10.14110 -8.67867 -8.17089 -6.28258 -0.06340 0.09510 0.28277 1.24792 1.40154 1.43178 1.51392 2.39308 2.71099 3.08238 3.17562 3.64863 3.76750 4.11258 4.17112 4.22937 4.34215 4.38296 4.51283 4.67210 4.82070 4.91339 4.95436 4.97220 5.07878 5.21699 5.40284 5.53877 5.57676 5.73082 5.79898 6.05476 6.25176 6.83786 6.91656 7.38607 8.89398 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.007283 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.827412 B = 3843.749335 C = 4801.110389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.013 6.013 3 C 0.250 3.750 4 N -0.535 5.535 5 C 0.159 3.841 6 C -0.153 4.153 7 C 0.163 3.837 8 N -0.520 5.520 9 C -0.058 4.058 10 C -0.112 4.112 11 C -0.099 4.099 12 C 0.074 3.926 13 H 0.048 0.952 14 C -0.522 4.522 15 H 0.047 0.953 16 C 0.027 3.973 17 N -0.918 5.918 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.271 1.271 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.167 0.833 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -10.989 0.552 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.218 5.782 3 C -0.126 4.126 4 N -0.253 5.253 5 C -0.009 4.009 6 C -0.160 4.160 7 C 0.016 3.984 8 N -0.237 5.237 9 C -0.095 4.095 10 C -0.150 4.150 11 C -0.138 4.138 12 C 0.054 3.946 13 H 0.066 0.934 14 C -0.560 4.560 15 H 0.065 0.935 16 C -0.173 4.173 17 N -0.557 5.557 18 Si 0.774 3.226 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.196 1.196 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.156 0.844 25 H 0.185 0.815 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.640 -12.824 0.444 13.100 hybrid contribution -1.572 2.924 0.518 3.360 sum 1.068 -9.900 0.961 10.003 Atomic orbital electron populations 1.23568 0.92021 1.07819 1.06632 1.85303 1.09236 0.92071 1.91570 1.25282 0.87505 1.01691 0.98120 1.68716 1.34646 1.04446 1.17515 1.23386 0.97711 0.90409 0.89412 1.21902 0.94259 1.00535 0.99289 1.21872 0.98160 0.87378 0.90942 1.68417 1.21554 1.16922 1.16805 1.20385 0.87920 0.97233 1.04001 1.21605 1.00605 0.93136 0.99632 1.21553 0.94939 0.98704 0.98561 1.17711 0.94266 0.84626 0.97955 0.93439 1.21183 1.25864 1.04007 1.04969 0.93517 1.25599 0.97213 0.98064 0.96449 1.69992 1.46030 1.17850 1.21780 0.85702 0.78757 0.78734 0.79395 1.20017 1.20880 1.19575 0.89889 0.89781 0.84450 0.81548 0.88484 0.88216 0.92636 0.88577 0.93556 0.93369 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.62 113.37 1.09 -1.79 16 2 S -0.01 -0.38 22.90 -56.49 -1.29 -1.67 16 3 C 0.25 9.53 7.85 180.48 1.42 10.94 16 4 N -0.54 -21.41 9.15 -196.32 -1.80 -23.21 16 5 C 0.16 6.90 10.33 84.85 0.88 7.78 16 6 C -0.15 -6.68 5.41 -19.87 -0.11 -6.79 16 7 C 0.16 6.40 6.63 42.23 0.28 6.68 16 8 N -0.52 -20.45 10.28 -185.11 -1.90 -22.35 16 9 C -0.06 -1.80 5.94 29.68 0.18 -1.62 16 10 C -0.11 -3.56 5.97 30.60 0.18 -3.38 16 11 C -0.10 -4.05 5.23 30.64 0.16 -3.89 16 12 C 0.07 3.50 2.37 -12.45 -0.03 3.47 16 13 H 0.05 2.55 7.20 -2.39 -0.02 2.53 16 14 C -0.52 -26.89 6.99 25.60 0.18 -26.71 16 15 H 0.05 2.45 7.82 -2.91 -0.02 2.42 16 16 C 0.03 1.40 5.45 84.65 0.46 1.86 16 17 N -0.92 -50.49 12.75 21.45 0.27 -50.22 16 18 Si 0.95 41.68 29.54 68.60 2.03 43.71 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H 0.08 1.96 8.11 -2.40 -0.02 1.94 16 23 H 0.08 1.96 8.11 -2.40 -0.02 1.95 16 24 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.17 7.37 7.38 -2.91 -0.02 7.35 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.05 1.84 8.10 -2.38 -0.02 1.82 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 32 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -59.19 281.55 3.11 -56.08 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.11 Total: 11.12 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.69 Total: -13.46 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -3.43 Total: -95.78 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.29 Total: -1.67 kcal Total: -59.19 3.11 -56.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.867 kcal (2) G-P(sol) polarization free energy of solvation -59.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds