Wall clock time and date at job start Mon Mar 30 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.22124 * 2 1 4 4 C 1.52734 * 109.25578 * 119.45342 * 2 1 3 5 5 C 1.53315 * 108.39163 * 171.38982 * 4 2 1 6 6 C 1.52723 * 108.39043 * 290.13536 * 5 4 2 7 7 H 1.09001 * 109.22618 * 171.37000 * 6 5 4 8 8 C 1.50697 * 109.25390 * 290.82260 * 6 5 4 9 9 H 1.07995 * 120.00530 * 86.07363 * 8 6 5 10 10 C 1.37880 * 119.99846 * 266.06757 * 8 6 5 11 11 N 1.31516 * 120.00003 * 354.92846 * 10 8 6 12 12 Si 1.86804 * 120.00135 * 174.92118 * 10 8 6 13 13 H 1.48491 * 109.47032 * 180.02562 * 12 10 8 14 14 H 1.48498 * 109.47223 * 300.00755 * 12 10 8 15 15 H 1.48503 * 109.46762 * 60.00492 * 12 10 8 16 16 C 1.50633 * 110.59282 * 51.10694 * 6 5 4 17 17 C 1.38926 * 117.74276 * 162.26895 * 16 6 5 18 18 C 1.37910 * 120.56433 * 179.76358 * 17 16 6 19 19 C 1.38385 * 119.75908 * 359.96291 * 18 17 16 20 20 Cl 1.73604 * 120.12988 * 180.09568 * 19 18 17 21 21 C 1.38043 * 119.74027 * 0.12017 * 19 18 17 22 22 C 1.37678 * 122.55639 * 342.20941 * 16 6 5 23 23 H 1.09008 * 109.47315 * 179.44214 * 1 2 3 24 24 H 1.08998 * 109.47301 * 299.44600 * 1 2 3 25 25 H 1.09004 * 109.47561 * 59.44662 * 1 2 3 26 26 H 1.09007 * 109.68067 * 291.12211 * 4 2 1 27 27 H 1.09000 * 109.68270 * 51.63105 * 4 2 1 28 28 H 1.09007 * 109.67877 * 170.41214 * 5 4 2 29 29 H 1.09005 * 109.68125 * 49.86506 * 5 4 2 30 30 H 0.96997 * 119.99860 * 179.97438 * 11 10 8 31 31 H 1.07995 * 119.71970 * 359.78597 * 17 16 6 32 32 H 1.07995 * 120.12062 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.73057 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8888 1.0292 0.0000 4 6 2.0336 -0.7090 1.2555 5 6 3.5511 -0.8899 1.1330 6 6 3.8265 -1.9268 0.0461 7 1 4.8965 -1.9551 -0.1602 8 6 3.3773 -3.2824 0.5272 9 1 2.3504 -3.5895 0.3946 10 6 4.2773 -4.1308 1.1365 11 7 5.5480 -3.7995 1.2087 12 14 3.6918 -5.7506 1.8596 13 1 4.8452 -6.4733 2.4532 14 1 2.6792 -5.4853 2.9128 15 1 3.0855 -6.5807 0.7878 16 6 3.0861 -1.5782 -1.2185 17 6 3.5040 -2.1792 -2.3993 18 6 2.8644 -1.9056 -3.5901 19 6 1.7967 -1.0255 -3.6099 20 17 0.9830 -0.6760 -5.1031 21 6 1.3814 -0.4262 -2.4377 22 6 2.0267 -0.6991 -1.2384 23 1 -0.3634 -1.0277 -0.0100 24 1 -0.3634 0.5052 0.8949 25 1 -0.3634 0.5224 -0.8850 26 1 1.8055 -0.1057 2.1343 27 1 1.5533 -1.6834 1.3446 28 1 3.9573 -1.2373 2.0831 29 1 4.0132 0.0590 0.8607 30 1 6.1811 -4.3962 1.6377 31 1 4.3366 -2.8669 -2.3845 32 1 3.1955 -2.3766 -4.5038 33 1 0.5478 0.2604 -2.4532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261016625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:13 Heat of formation + Delta-G solvation = -12.158684 kcal Electronic energy + Delta-G solvation = -16247.044325 eV Core-core repulsion = 13682.964484 eV Total energy + Delta-G solvation = -2564.079841 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58852 -36.54299 -35.24977 -33.87055 -31.56986 -29.42791 -28.99112 -26.53308 -23.99564 -22.50204 -21.94796 -20.43948 -18.65241 -16.25976 -16.13548 -15.14816 -14.98736 -14.49529 -13.75083 -13.30871 -13.20318 -12.87818 -12.52371 -12.27073 -12.20956 -11.54422 -11.39477 -11.29157 -11.09963 -10.91311 -10.90328 -10.62632 -10.41207 -10.36607 -9.96687 -9.49278 -9.13844 -9.07357 -8.52803 -8.21832 -7.69326 -6.11084 -4.14414 1.88569 1.90368 2.56486 3.27103 3.32105 3.35207 4.25162 4.42666 5.12826 5.23746 5.28846 5.52398 5.52718 5.67900 5.88964 5.93679 6.02127 6.07000 6.21107 6.32331 6.44398 6.50688 6.57098 6.61532 6.66779 6.81328 6.97837 7.04143 7.18975 7.30331 7.54219 7.57956 7.81328 7.83340 8.28163 8.92685 9.48539 10.96763 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.007437 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.561685 B = 3763.818036 C = 4381.036925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 H 0.071 0.929 4 C -0.107 4.107 5 C -0.103 4.103 6 C 0.061 3.939 7 H 0.073 0.927 8 C -0.501 4.501 9 H 0.055 0.945 10 C 0.067 3.933 11 N -0.892 5.892 12 Si 0.891 3.109 13 H -0.287 1.287 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.016 4.016 17 C -0.101 4.101 18 C -0.120 4.120 19 C -0.058 4.058 20 Cl -0.100 7.100 21 C -0.116 4.116 22 C -0.079 4.079 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 6.377 -5.083 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 H 0.089 0.911 4 C -0.145 4.145 5 C -0.141 4.141 6 C 0.042 3.958 7 H 0.091 0.909 8 C -0.539 4.539 9 H 0.073 0.927 10 C -0.136 4.136 11 N -0.529 5.529 12 Si 0.719 3.281 13 H -0.213 1.213 14 H -0.201 1.201 15 H -0.202 1.202 16 C -0.016 4.016 17 C -0.120 4.120 18 C -0.139 4.139 19 C -0.085 4.085 20 Cl -0.072 7.072 21 C -0.134 4.134 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.338 6.332 -5.146 10.332 hybrid contribution -0.379 -0.974 0.143 1.055 sum -6.717 5.358 -5.002 9.942 Atomic orbital electron populations 1.21911 0.95348 1.01964 1.00871 1.19960 0.94821 0.98442 0.93167 0.91113 1.21553 0.98081 1.00382 0.94452 1.21617 0.93792 0.97423 1.01223 1.18029 0.97104 0.93984 0.86648 0.90940 1.20867 0.95811 0.99224 1.37993 0.92684 1.24955 0.94758 0.97939 0.95911 1.69894 1.01708 1.37633 1.43697 0.86668 0.78263 0.83580 0.79636 1.21250 1.20112 1.20194 1.20588 0.93274 0.90668 0.97102 1.21217 1.00257 0.99404 0.91085 1.20886 0.95657 0.98509 0.98857 1.20591 0.98272 1.03267 0.86324 1.98305 1.79387 1.94598 1.34862 1.20949 1.00680 1.00885 0.90909 1.19557 0.96270 0.98425 0.93639 0.92466 0.92831 0.93045 0.93506 0.90747 0.92008 0.95201 0.92668 0.85264 0.86145 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.69 37.15 0.32 -1.70 16 2 C -0.05 -0.76 2.77 -91.94 -0.25 -1.01 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.11 -1.97 5.20 -26.70 -0.14 -2.11 16 5 C -0.10 -2.16 5.41 -26.71 -0.14 -2.31 16 6 C 0.06 1.42 2.29 -93.10 -0.21 1.21 16 7 H 0.07 1.89 7.22 -51.93 -0.37 1.51 16 8 C -0.50 -12.88 7.21 -34.44 -0.25 -13.12 16 9 H 0.05 1.44 7.64 -52.49 -0.40 1.04 16 10 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16 11 N -0.89 -24.52 12.77 55.43 0.71 -23.81 16 12 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C -0.02 -0.33 5.00 -104.60 -0.52 -0.86 16 17 C -0.10 -2.01 9.52 -39.45 -0.38 -2.39 16 18 C -0.12 -2.11 9.84 -39.65 -0.39 -2.50 16 19 C -0.06 -0.99 6.31 -39.60 -0.25 -1.24 16 20 Cl -0.10 -1.47 28.96 -51.86 -1.50 -2.97 16 21 C -0.12 -1.96 8.83 -39.41 -0.35 -2.31 16 22 C -0.08 -1.46 5.43 -104.62 -0.57 -2.03 16 23 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.65 6.41 -51.93 -0.33 0.32 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.50 7.06 -51.93 -0.37 1.14 16 28 H 0.06 1.40 8.11 -51.93 -0.42 0.98 16 29 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.13 2.60 8.05 -52.49 -0.42 2.18 16 32 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.12 1.81 6.34 -52.48 -0.33 1.47 16 LS Contribution 282.41 15.07 4.26 4.26 Total: -1.00 -26.12 282.41 -9.11 -35.23 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.32 Total: 0.41 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.23 Total: -28.71 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.71 Total: -23.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.50 Total: -2.97 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.12 -9.11 -35.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.073 kcal (2) G-P(sol) polarization free energy of solvation -26.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds