Wall clock time and date at job start Mon Mar 30 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.22124 * 2 1 4 4 C 1.52734 * 109.25578 * 119.45342 * 2 1 3 5 5 C 1.53315 * 108.39163 * 171.38982 * 4 2 1 6 6 C 1.52723 * 108.39043 * 290.13536 * 5 4 2 7 7 H 1.09001 * 109.22618 * 171.37000 * 6 5 4 8 8 C 1.50697 * 109.25390 * 290.82260 * 6 5 4 9 9 H 1.07995 * 120.00530 * 86.07363 * 8 6 5 10 10 C 1.37880 * 119.99846 * 266.06757 * 8 6 5 11 11 N 1.31516 * 120.00003 * 354.92846 * 10 8 6 12 12 Si 1.86804 * 120.00135 * 174.92118 * 10 8 6 13 13 H 1.48491 * 109.47032 * 180.02562 * 12 10 8 14 14 H 1.48498 * 109.47223 * 300.00755 * 12 10 8 15 15 H 1.48503 * 109.46762 * 60.00492 * 12 10 8 16 16 C 1.50633 * 110.59282 * 51.10694 * 6 5 4 17 17 C 1.38926 * 117.74276 * 162.26895 * 16 6 5 18 18 C 1.37910 * 120.56433 * 179.76358 * 17 16 6 19 19 C 1.38385 * 119.75908 * 359.96291 * 18 17 16 20 20 Cl 1.73604 * 120.12988 * 180.09568 * 19 18 17 21 21 C 1.38043 * 119.74027 * 0.12017 * 19 18 17 22 22 C 1.37678 * 122.55639 * 342.20941 * 16 6 5 23 23 H 1.09008 * 109.47315 * 179.44214 * 1 2 3 24 24 H 1.08998 * 109.47301 * 299.44600 * 1 2 3 25 25 H 1.09004 * 109.47561 * 59.44662 * 1 2 3 26 26 H 1.09007 * 109.68067 * 291.12211 * 4 2 1 27 27 H 1.09000 * 109.68270 * 51.63105 * 4 2 1 28 28 H 1.09007 * 109.67877 * 170.41214 * 5 4 2 29 29 H 1.09005 * 109.68125 * 49.86506 * 5 4 2 30 30 H 0.96997 * 119.99860 * 179.97438 * 11 10 8 31 31 H 1.07995 * 119.71970 * 359.78597 * 17 16 6 32 32 H 1.07995 * 120.12062 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.73057 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8888 1.0292 0.0000 4 6 2.0336 -0.7090 1.2555 5 6 3.5511 -0.8899 1.1330 6 6 3.8265 -1.9268 0.0461 7 1 4.8965 -1.9551 -0.1602 8 6 3.3773 -3.2824 0.5272 9 1 2.3504 -3.5895 0.3946 10 6 4.2773 -4.1308 1.1365 11 7 5.5480 -3.7995 1.2087 12 14 3.6918 -5.7506 1.8596 13 1 4.8452 -6.4733 2.4532 14 1 2.6792 -5.4853 2.9128 15 1 3.0855 -6.5807 0.7878 16 6 3.0861 -1.5782 -1.2185 17 6 3.5040 -2.1792 -2.3993 18 6 2.8644 -1.9056 -3.5901 19 6 1.7967 -1.0255 -3.6099 20 17 0.9830 -0.6760 -5.1031 21 6 1.3814 -0.4262 -2.4377 22 6 2.0267 -0.6991 -1.2384 23 1 -0.3634 -1.0277 -0.0100 24 1 -0.3634 0.5052 0.8949 25 1 -0.3634 0.5224 -0.8850 26 1 1.8055 -0.1057 2.1343 27 1 1.5533 -1.6834 1.3446 28 1 3.9573 -1.2373 2.0831 29 1 4.0132 0.0590 0.8607 30 1 6.1811 -4.3962 1.6377 31 1 4.3366 -2.8669 -2.3845 32 1 3.1955 -2.3766 -4.5038 33 1 0.5478 0.2604 -2.4532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261016625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:13 Heat of formation + Delta-G solvation = -23.159479 kcal Electronic energy + Delta-G solvation = -16247.521355 eV Core-core repulsion = 13682.964484 eV Total energy + Delta-G solvation = -2564.556871 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05990 -37.90680 -36.65940 -35.54042 -33.37980 -30.89120 -30.41917 -28.20007 -25.70978 -23.96855 -23.46338 -21.91399 -20.26525 -18.10019 -17.64451 -16.73854 -16.51623 -16.10739 -15.20067 -14.86163 -14.60955 -14.39360 -14.08236 -13.88833 -13.60673 -13.15448 -12.87318 -12.76408 -12.61237 -12.55918 -12.35535 -12.27645 -11.92981 -11.76590 -11.53485 -11.08452 -10.97529 -10.74124 -10.49286 -9.63232 -9.21755 -8.12410 -6.21687 0.42714 0.47199 1.23595 1.40682 1.41339 1.48847 2.41092 2.85068 3.17269 3.82395 3.94247 4.17080 4.20425 4.34932 4.40469 4.53491 4.63571 4.73971 4.87862 4.92181 5.00242 5.10637 5.17417 5.21979 5.29614 5.39617 5.40447 5.49372 5.57850 5.64560 5.71177 5.88271 6.03246 6.17335 6.33104 6.91100 7.43388 8.94276 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.007437 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.561685 B = 3763.818036 C = 4381.036925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 H 0.090 0.910 4 C -0.100 4.100 5 C -0.099 4.099 6 C 0.062 3.938 7 H 0.031 0.969 8 C -0.503 4.503 9 H 0.046 0.954 10 C 0.018 3.982 11 N -0.925 5.925 12 Si 0.946 3.054 13 H -0.285 1.285 14 H -0.269 1.269 15 H -0.274 1.274 16 C -0.046 4.046 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.056 4.056 20 Cl -0.073 7.073 21 C -0.110 4.110 22 C -0.081 4.081 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 7.617 -5.952 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 H 0.108 0.892 4 C -0.138 4.138 5 C -0.137 4.137 6 C 0.043 3.957 7 H 0.049 0.951 8 C -0.541 4.541 9 H 0.064 0.936 10 C -0.181 4.181 11 N -0.564 5.564 12 Si 0.772 3.228 13 H -0.210 1.210 14 H -0.194 1.194 15 H -0.200 1.200 16 C -0.047 4.047 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.083 4.083 20 Cl -0.044 7.044 21 C -0.128 4.128 22 C -0.082 4.082 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.159 0.841 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.773 7.576 -6.021 13.062 hybrid contribution 0.351 -1.301 0.295 1.379 sum -8.422 6.275 -5.726 11.962 Atomic orbital electron populations 1.21870 0.92894 1.01789 1.02955 1.20027 0.96777 0.98621 0.90905 0.89219 1.21471 0.95323 1.00059 0.96922 1.21495 0.96305 0.97022 0.98914 1.17850 0.95100 0.93908 0.88822 0.95051 1.21088 0.95230 1.00384 1.37407 0.93562 1.25643 0.94856 1.01002 0.96572 1.70021 1.02642 1.38790 1.44987 0.85785 0.77869 0.80123 0.78997 1.21013 1.19429 1.19958 1.20422 0.94967 0.93147 0.96128 1.21155 1.00590 0.99891 0.92161 1.21025 0.95551 0.98488 0.98562 1.20738 0.97713 1.02232 0.87604 1.98319 1.78664 1.94331 1.33080 1.21200 1.00833 1.00738 0.90025 1.19796 0.95311 0.97621 0.95430 0.93749 0.90739 0.91043 0.90934 0.93020 0.94750 0.94052 0.92872 0.87141 0.84115 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.69 71.98 0.63 -2.73 16 2 C -0.05 -1.38 2.77 -11.65 -0.03 -1.41 16 3 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.10 -3.59 5.20 30.61 0.16 -3.43 16 5 C -0.10 -4.29 5.41 30.61 0.17 -4.12 16 6 C 0.06 3.02 2.29 -12.40 -0.03 2.99 16 7 H 0.03 1.75 7.22 -2.39 -0.02 1.74 16 8 C -0.50 -26.85 7.21 25.60 0.18 -26.66 16 9 H 0.05 2.50 7.64 -2.91 -0.02 2.47 16 10 C 0.02 0.97 5.45 84.66 0.46 1.43 16 11 N -0.92 -53.20 12.77 21.45 0.27 -52.93 16 12 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 16 C -0.05 -1.97 5.00 -19.85 -0.10 -2.07 16 17 C -0.12 -4.86 9.52 22.36 0.21 -4.64 16 18 C -0.12 -3.99 9.84 22.23 0.22 -3.77 16 19 C -0.06 -1.76 6.31 22.26 0.14 -1.62 16 20 Cl -0.07 -1.89 28.96 -2.72 -0.08 -1.97 16 21 C -0.11 -3.38 8.83 22.38 0.20 -3.18 16 22 C -0.08 -2.89 5.43 -19.86 -0.11 -3.00 16 23 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.45 6.41 -2.38 -0.02 1.44 16 26 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.05 2.07 7.06 -2.39 -0.02 2.06 16 28 H 0.03 1.62 8.11 -2.38 -0.02 1.60 16 29 H 0.04 1.64 8.10 -2.38 -0.02 1.63 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.11 4.76 8.05 -2.91 -0.02 4.74 16 32 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.15 3.74 6.34 -2.91 -0.02 3.72 16 Total: -1.00 -57.81 282.41 5.42 -52.39 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.10 Total: 9.46 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 2.10 Total: -52.22 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.27 Total: -52.93 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -57.81 5.42 -52.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.231 kcal (2) G-P(sol) polarization free energy of solvation -57.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds