Wall clock time and date at job start Mon Mar 30 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35971 * 116.99838 * 2 1 4 4 C 1.38694 * 119.98997 * 359.97438 * 3 2 1 5 5 C 1.38495 * 119.99159 * 180.02562 * 4 3 2 6 6 C 1.39299 * 119.87771 * 0.02562 * 5 4 3 7 7 C 1.38491 * 119.92304 * 359.74585 * 6 5 4 8 8 C 1.38262 * 120.09333 * 0.50538 * 7 6 5 9 9 C 1.50700 * 119.95503 * 179.76912 * 8 7 6 10 10 H 1.09001 * 109.46946 * 179.72634 * 9 8 7 11 11 C 1.53002 * 109.47089 * 299.72358 * 9 8 7 12 12 C 1.50695 * 109.47248 * 59.72688 * 9 8 7 13 13 H 1.08007 * 120.00175 * 354.35655 * 12 9 8 14 14 C 1.37882 * 120.00115 * 174.36048 * 12 9 8 15 15 N 1.31513 * 119.99704 * 156.98779 * 14 12 9 16 16 Si 1.86797 * 120.00018 * 336.98587 * 14 12 9 17 17 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47067 * 300.00327 * 16 14 12 19 19 H 1.48502 * 109.47009 * 59.99701 * 16 14 12 20 20 O 1.36602 * 108.60946 * 180.02562 * 6 5 4 21 21 C 1.43984 * 105.47319 * 342.70781 * 20 6 5 22 22 O 1.36503 * 131.47899 * 180.02562 * 5 4 3 23 23 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47065 * 300.00395 * 1 2 3 25 25 H 1.08999 * 109.47175 * 60.00253 * 1 2 3 26 26 H 1.07997 * 120.00744 * 0.04341 * 4 3 2 27 27 H 1.08000 * 119.95369 * 180.25426 * 7 6 5 28 28 H 1.09004 * 109.46915 * 53.28960 * 11 9 8 29 29 H 1.08999 * 109.47196 * 173.28447 * 11 9 8 30 30 H 1.09002 * 109.47344 * 293.28657 * 11 9 8 31 31 H 0.96999 * 120.00198 * 354.92377 * 15 14 12 32 32 H 1.09002 * 110.57354 * 268.57713 * 21 20 6 33 33 H 1.09003 * 110.57024 * 145.70623 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2907 2.3746 -0.0005 5 6 1.9194 3.6086 -0.0011 6 6 3.3106 3.6786 -0.0016 7 6 4.0609 2.5146 0.0037 8 6 3.4310 1.2838 -0.0010 9 6 4.2505 0.0191 -0.0004 10 1 3.5857 -0.8447 0.0004 11 6 5.1327 -0.0175 -1.2500 12 6 5.1203 -0.0154 1.2297 13 1 5.1519 0.8366 1.8928 14 6 5.8758 -1.1345 1.5087 15 7 6.9414 -1.0346 2.2731 16 14 5.3860 -2.7924 0.8011 17 1 6.3537 -3.8266 1.2475 18 1 4.0252 -3.1507 1.2759 19 1 5.3890 -2.7180 -0.6820 20 8 3.6809 4.9935 -0.0015 21 6 2.5095 5.7225 -0.4134 22 8 1.4185 4.8784 -0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2122 2.3180 -0.0002 27 1 5.1395 2.5683 0.0075 28 1 5.7120 0.9037 -1.3129 29 1 5.8102 -0.8694 -1.1916 30 1 4.5045 -0.1129 -2.1356 31 1 7.2381 -0.1637 2.5802 32 1 2.5022 5.8562 -1.4951 33 1 2.4607 6.6865 0.0930 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:29 Heat of formation + Delta-G solvation = -75.517281 kcal Electronic energy + Delta-G solvation = -18509.725379 eV Core-core repulsion = 15502.188938 eV Total energy + Delta-G solvation = -3007.536441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83197 -39.41329 -36.58823 -35.93895 -34.03034 -31.57101 -29.40695 -28.71657 -27.04766 -25.34651 -24.64496 -22.87673 -22.11235 -19.89886 -18.36434 -17.64394 -17.19952 -16.96143 -16.21287 -15.49693 -15.24111 -14.68314 -14.13204 -13.87963 -13.65437 -13.06440 -12.94132 -12.71274 -12.69919 -12.39764 -11.82673 -11.54900 -11.49703 -11.32275 -11.03887 -10.47984 -10.23411 -9.80800 -9.72106 -9.69300 -8.93947 -8.31582 -8.14223 -7.24998 -6.39678 -4.00727 1.62034 1.66116 3.00651 3.45819 3.51105 3.61354 3.68427 3.72704 4.04678 4.56288 4.78014 4.85730 4.98015 5.17312 5.23506 5.31405 5.35521 5.40718 5.61442 5.70078 5.89774 6.15098 6.31567 6.38697 6.50404 6.66200 6.73200 6.85189 6.99151 7.25306 7.35482 7.55321 7.79630 8.14820 8.43280 8.94883 9.63459 10.95111 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024781 B = 0.007702 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.644056 B = 3634.613779 C = 4415.649119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.298 6.298 3 C 0.125 3.875 4 C -0.190 4.190 5 C 0.040 3.960 6 C -0.009 4.009 7 C -0.053 4.053 8 C -0.041 4.041 9 C 0.055 3.945 10 H 0.043 0.957 11 C -0.141 4.141 12 C -0.598 4.598 13 H 0.059 0.941 14 C 0.039 3.961 15 N -0.899 5.899 16 Si 1.035 2.965 17 H -0.287 1.287 18 H -0.282 1.282 19 H -0.276 1.276 20 O -0.312 6.312 21 C 0.215 3.785 22 O -0.316 6.316 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.269 0.731 32 H 0.076 0.924 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 7.569 -7.352 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.211 6.211 3 C 0.079 3.921 4 C -0.209 4.209 5 C -0.004 4.004 6 C -0.053 4.053 7 C -0.072 4.072 8 C -0.042 4.042 9 C 0.036 3.964 10 H 0.061 0.939 11 C -0.198 4.198 12 C -0.636 4.636 13 H 0.077 0.923 14 C -0.167 4.167 15 N -0.532 5.532 16 Si 0.863 3.137 17 H -0.213 1.213 18 H -0.208 1.208 19 H -0.202 1.202 20 O -0.228 6.228 21 C 0.102 3.898 22 O -0.232 6.232 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.160 0.840 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.291 5.966 -7.229 14.674 hybrid contribution -0.772 2.209 0.065 2.341 sum -12.064 8.174 -7.164 16.238 Atomic orbital electron populations 1.23029 0.79475 1.03649 1.00886 1.86236 1.20309 1.25718 1.88816 1.18396 0.91725 0.83280 0.98679 1.19829 0.99954 0.88242 1.12897 1.19211 0.90823 0.85467 1.04936 1.19697 0.91897 0.84864 1.08801 1.19827 1.00554 0.86868 0.99901 1.19513 0.89847 0.96453 0.98386 1.18040 0.93171 0.89588 0.95583 0.93914 1.22191 0.99457 1.01375 0.96818 1.21904 1.27934 1.04524 1.09189 0.92282 1.25692 0.92556 1.02850 0.95589 1.70850 1.20087 1.28147 1.34162 0.84163 0.76353 0.76418 0.76730 1.21304 1.20795 1.20201 1.87341 1.34978 1.15044 1.85476 1.25462 0.71722 0.93078 0.99496 1.87260 1.36086 1.14686 1.85211 0.88404 0.92934 0.93079 0.84975 0.83967 0.93733 0.92711 0.95734 0.92116 0.90606 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.30 -5.43 9.25 -19.65 -0.18 -5.61 16 3 C 0.12 2.41 6.66 -39.26 -0.26 2.15 16 4 C -0.19 -3.26 9.05 -39.32 -0.36 -3.62 16 5 C 0.04 0.71 7.15 -39.09 -0.28 0.43 16 6 C -0.01 -0.17 7.15 -39.09 -0.28 -0.45 16 7 C -0.05 -1.10 8.57 -39.48 -0.34 -1.43 16 8 C -0.04 -0.89 4.76 -104.46 -0.50 -1.39 16 9 C 0.06 1.32 2.03 -92.93 -0.19 1.13 16 10 H 0.04 1.05 5.56 -51.93 -0.29 0.76 16 11 C -0.14 -3.09 8.83 37.16 0.33 -2.76 16 12 C -0.60 -16.65 8.47 -34.44 -0.29 -16.94 16 13 H 0.06 1.78 7.77 -52.48 -0.41 1.37 16 14 C 0.04 1.11 5.20 -17.82 -0.09 1.02 16 15 N -0.90 -27.36 13.70 55.43 0.76 -26.60 16 16 Si 1.04 25.11 26.44 -169.99 -4.49 20.61 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.19 6.14 56.52 0.35 -5.84 16 20 O -0.31 -5.36 11.41 -46.03 -0.53 -5.88 16 21 C 0.21 2.75 8.89 101.05 0.90 3.65 16 22 O -0.32 -5.03 11.40 -45.70 -0.52 -5.55 16 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 26 H 0.13 1.87 6.29 -52.49 -0.33 1.54 16 27 H 0.14 2.99 7.55 -52.49 -0.40 2.59 16 28 H 0.04 0.93 7.19 -51.93 -0.37 0.56 16 29 H 0.05 1.24 5.46 -51.93 -0.28 0.96 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.27 8.15 8.73 -40.82 -0.36 7.80 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 275.53 15.07 4.15 4.15 Total: -1.00 -31.88 275.53 -4.95 -36.83 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.77 Total: -1.04 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.37 Total: -16.91 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.76 Total: -26.60 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.23 Total: -17.04 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.49 Total: 20.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.88 -4.95 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.686 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds