Wall clock time and date at job start Mon Mar 30 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35971 * 116.99838 * 2 1 4 4 C 1.38694 * 119.98997 * 359.97438 * 3 2 1 5 5 C 1.38495 * 119.99159 * 180.02562 * 4 3 2 6 6 C 1.39299 * 119.87771 * 0.02562 * 5 4 3 7 7 C 1.38491 * 119.92304 * 359.74585 * 6 5 4 8 8 C 1.38262 * 120.09333 * 0.50538 * 7 6 5 9 9 C 1.50700 * 119.95503 * 179.76912 * 8 7 6 10 10 H 1.09001 * 109.46946 * 179.72634 * 9 8 7 11 11 C 1.53002 * 109.47089 * 299.72358 * 9 8 7 12 12 C 1.50695 * 109.47248 * 59.72688 * 9 8 7 13 13 H 1.08007 * 120.00175 * 354.35655 * 12 9 8 14 14 C 1.37882 * 120.00115 * 174.36048 * 12 9 8 15 15 N 1.31513 * 119.99704 * 156.98779 * 14 12 9 16 16 Si 1.86797 * 120.00018 * 336.98587 * 14 12 9 17 17 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47067 * 300.00327 * 16 14 12 19 19 H 1.48502 * 109.47009 * 59.99701 * 16 14 12 20 20 O 1.36602 * 108.60946 * 180.02562 * 6 5 4 21 21 C 1.43984 * 105.47319 * 342.70781 * 20 6 5 22 22 O 1.36503 * 131.47899 * 180.02562 * 5 4 3 23 23 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47065 * 300.00395 * 1 2 3 25 25 H 1.08999 * 109.47175 * 60.00253 * 1 2 3 26 26 H 1.07997 * 120.00744 * 0.04341 * 4 3 2 27 27 H 1.08000 * 119.95369 * 180.25426 * 7 6 5 28 28 H 1.09004 * 109.46915 * 53.28960 * 11 9 8 29 29 H 1.08999 * 109.47196 * 173.28447 * 11 9 8 30 30 H 1.09002 * 109.47344 * 293.28657 * 11 9 8 31 31 H 0.96999 * 120.00198 * 354.92377 * 15 14 12 32 32 H 1.09002 * 110.57354 * 268.57713 * 21 20 6 33 33 H 1.09003 * 110.57024 * 145.70623 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2907 2.3746 -0.0005 5 6 1.9194 3.6086 -0.0011 6 6 3.3106 3.6786 -0.0016 7 6 4.0609 2.5146 0.0037 8 6 3.4310 1.2838 -0.0010 9 6 4.2505 0.0191 -0.0004 10 1 3.5857 -0.8447 0.0004 11 6 5.1327 -0.0175 -1.2500 12 6 5.1203 -0.0154 1.2297 13 1 5.1519 0.8366 1.8928 14 6 5.8758 -1.1345 1.5087 15 7 6.9414 -1.0346 2.2731 16 14 5.3860 -2.7924 0.8011 17 1 6.3537 -3.8266 1.2475 18 1 4.0252 -3.1507 1.2759 19 1 5.3890 -2.7180 -0.6820 20 8 3.6809 4.9935 -0.0015 21 6 2.5095 5.7225 -0.4134 22 8 1.4185 4.8784 -0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2122 2.3180 -0.0002 27 1 5.1395 2.5683 0.0075 28 1 5.7120 0.9037 -1.3129 29 1 5.8102 -0.8694 -1.1916 30 1 4.5045 -0.1129 -2.1356 31 1 7.2381 -0.1637 2.5802 32 1 2.5022 5.8562 -1.4951 33 1 2.4607 6.6865 0.0930 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:29 Heat of formation + Delta-G solvation = -97.431788 kcal Electronic energy + Delta-G solvation = -18510.675663 eV Core-core repulsion = 15502.188938 eV Total energy + Delta-G solvation = -3008.486725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.12874 -40.76566 -38.04744 -37.22286 -35.84387 -33.54862 -30.83338 -30.15830 -28.12043 -26.78518 -26.41453 -24.44733 -23.49754 -21.64530 -19.75284 -19.46625 -18.57776 -18.39180 -17.59815 -16.70353 -16.39870 -16.09928 -15.68823 -15.41334 -15.18232 -14.75763 -14.62858 -14.13323 -13.98417 -13.92777 -13.54757 -13.09673 -12.88181 -12.68149 -12.39977 -12.31120 -11.90032 -11.62717 -11.50661 -11.16486 -10.90028 -10.33416 -9.77865 -8.81675 -8.51852 -6.27564 0.15671 0.21561 1.51670 1.58284 1.74343 1.78584 2.38495 2.53902 2.55049 2.60513 3.07418 3.47327 3.79129 3.90252 4.03276 4.10815 4.25829 4.35637 4.45566 4.53885 4.60223 4.76193 4.79645 4.85225 4.94151 4.96345 5.12850 5.20752 5.32884 5.51169 5.75907 6.02366 6.07309 6.15672 6.46301 6.64412 7.44822 8.66441 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024781 B = 0.007702 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.644056 B = 3634.613779 C = 4415.649119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.128 3.872 4 C -0.181 4.181 5 C 0.048 3.952 6 C -0.020 4.020 7 C -0.068 4.068 8 C -0.076 4.076 9 C 0.057 3.943 10 H 0.043 0.957 11 C -0.136 4.136 12 C -0.596 4.596 13 H 0.017 0.983 14 C -0.012 4.012 15 N -0.933 5.933 16 Si 1.075 2.925 17 H -0.290 1.290 18 H -0.266 1.266 19 H -0.244 1.244 20 O -0.329 6.329 21 C 0.204 3.796 22 O -0.317 6.317 23 H 0.121 0.879 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.168 0.832 27 H 0.121 0.879 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.253 0.747 32 H 0.106 0.894 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.644 7.897 -9.006 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.082 3.918 4 C -0.200 4.200 5 C 0.003 3.997 6 C -0.064 4.064 7 C -0.086 4.086 8 C -0.077 4.077 9 C 0.038 3.962 10 H 0.061 0.939 11 C -0.194 4.194 12 C -0.634 4.634 13 H 0.036 0.964 14 C -0.210 4.210 15 N -0.568 5.568 16 Si 0.896 3.104 17 H -0.216 1.216 18 H -0.192 1.192 19 H -0.169 1.169 20 O -0.247 6.247 21 C 0.094 3.906 22 O -0.233 6.233 23 H 0.139 0.861 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.186 0.814 27 H 0.139 0.861 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.191 6.329 -8.899 17.906 hybrid contribution 0.017 2.304 0.603 2.381 sum -14.174 8.633 -8.296 18.555 Atomic orbital electron populations 1.23443 0.76387 1.05861 1.02461 1.86195 1.23526 1.25253 1.88561 1.18361 0.91025 0.84585 0.97863 1.20080 1.01532 0.87105 1.11297 1.19382 0.90263 0.86593 1.03423 1.19670 0.92557 0.85210 1.08937 1.19647 0.99775 0.87933 1.01289 1.19341 0.91210 0.95564 1.01619 1.17893 0.93002 0.91123 0.94184 0.93925 1.22079 0.99354 1.00813 0.97127 1.22057 1.28362 1.02858 1.10103 0.96415 1.27083 0.91929 1.06596 0.95416 1.70975 1.22068 1.27104 1.36698 0.83672 0.76544 0.72034 0.78118 1.21620 1.19165 1.16855 1.87316 1.37230 1.14352 1.85783 1.26131 0.69318 0.93222 1.01931 1.87256 1.37054 1.13841 1.85195 0.86097 0.91872 0.90828 0.81428 0.86053 0.94009 0.93699 0.92813 0.93850 0.87686 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.37 16 2 O -0.32 -11.00 9.25 -93.22 -0.86 -11.86 16 3 C 0.13 4.75 6.66 22.48 0.15 4.90 16 4 C -0.18 -5.72 9.05 22.44 0.20 -5.52 16 5 C 0.05 1.61 7.15 22.59 0.16 1.78 16 6 C -0.02 -0.75 7.15 22.59 0.16 -0.59 16 7 C -0.07 -2.88 8.57 22.34 0.19 -2.69 16 8 C -0.08 -3.33 4.76 -19.76 -0.09 -3.42 16 9 C 0.06 2.74 2.03 -12.29 -0.02 2.72 16 10 H 0.04 2.05 5.56 -2.39 -0.01 2.04 16 11 C -0.14 -5.92 8.83 71.98 0.64 -5.29 16 12 C -0.60 -34.50 8.47 25.60 0.22 -34.28 16 13 H 0.02 1.13 7.77 -2.91 -0.02 1.11 16 14 C -0.01 -0.68 5.20 84.66 0.44 -0.24 16 15 N -0.93 -59.12 13.70 21.45 0.29 -58.82 16 16 Si 1.08 50.47 26.44 68.60 1.81 52.28 16 17 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.24 -10.18 6.14 99.48 0.61 -9.57 16 20 O -0.33 -10.96 11.41 -77.26 -0.88 -11.84 16 21 C 0.20 4.58 8.89 113.37 1.01 5.59 16 22 O -0.32 -9.05 11.40 -76.09 -0.87 -9.92 16 23 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.20 7.66 -2.38 -0.02 1.18 16 25 H 0.07 1.22 7.66 -2.39 -0.02 1.21 16 26 H 0.17 4.00 6.29 -2.91 -0.02 3.98 16 27 H 0.12 5.48 7.55 -2.91 -0.02 5.46 16 28 H 0.04 1.79 7.19 -2.39 -0.02 1.77 16 29 H 0.04 2.00 5.46 -2.39 -0.01 1.98 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -71.94 275.53 4.65 -67.29 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.99 Total: 8.55 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.16 Total: -35.67 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.29 Total: -58.82 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -2.61 Total: -33.63 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.81 Total: 52.28 kcal Total: -71.94 4.65 -67.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.144 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds