Wall clock time and date at job start Mon Mar 30 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00220 * 2 1 4 4 H 1.48507 * 109.47047 * 270.00097 * 3 2 1 5 5 H 1.48506 * 109.46989 * 29.99682 * 3 2 1 6 6 H 1.48495 * 109.47059 * 150.00209 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99575 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00164 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47211 * 179.97438 * 9 7 2 11 11 C 1.38166 * 120.01769 * 264.72585 * 10 9 7 12 12 C 1.38434 * 120.03518 * 180.29779 * 11 10 9 13 13 F 1.35093 * 119.97354 * 179.97438 * 12 11 10 14 14 C 1.38482 * 120.05559 * 359.95356 * 12 11 10 15 15 C 1.38127 * 120.03181 * 0.04258 * 14 12 11 16 16 C 1.38688 * 120.01230 * 84.99596 * 10 9 7 17 17 O 1.35946 * 120.03410 * 359.74773 * 16 10 9 18 18 C 1.42898 * 117.00447 * 186.03014 * 17 16 10 19 19 C 1.53778 * 113.61664 * 255.35330 * 18 17 16 20 20 C 1.53784 * 87.08067 * 220.01670 * 19 18 17 21 21 C 1.53783 * 113.61572 * 157.85040 * 18 17 16 22 22 H 0.96997 * 119.99586 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46952 * 59.99349 * 9 7 2 24 24 H 1.08998 * 109.46613 * 299.99678 * 9 7 2 25 25 H 1.08000 * 119.98326 * 0.26914 * 11 10 9 26 26 H 1.08000 * 119.98184 * 180.02562 * 14 12 11 27 27 H 1.08001 * 120.01614 * 179.97438 * 15 14 12 28 28 H 1.09006 * 112.84492 * 26.65860 * 18 17 16 29 29 H 1.08998 * 113.61492 * 334.56956 * 19 18 17 30 30 H 1.09001 * 113.61559 * 105.47147 * 19 18 17 31 31 H 1.09003 * 113.61164 * 270.88555 * 20 19 18 32 32 H 1.08997 * 113.61289 * 139.97756 * 20 19 18 33 33 H 1.08997 * 113.61609 * 254.53270 * 21 18 17 34 34 H 1.08998 * 113.60922 * 25.35579 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 -0.0001 11 6 4.3475 -3.2302 1.1912 12 6 4.8148 -4.5333 1.1909 13 9 5.1411 -5.1335 2.3564 14 6 4.9476 -5.2222 -0.0030 15 6 4.6147 -4.6096 -1.1954 16 6 4.1468 -3.3036 -1.1965 17 8 3.8192 -2.6993 -2.3694 18 6 3.8540 -3.5074 -3.5475 19 6 5.0754 -3.2394 -4.4426 20 6 4.1263 -3.3782 -5.6446 21 6 2.9905 -2.9596 -4.6960 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6808 0.8904 24 1 3.8751 -0.6797 -0.8895 25 1 4.2440 -2.6941 2.1230 26 1 5.3119 -6.2389 -0.0018 27 1 4.7188 -5.1470 -2.1264 28 1 3.6860 -4.5644 -3.3407 29 1 5.4901 -2.2380 -4.3270 30 1 5.8335 -4.0210 -4.3924 31 1 4.0338 -4.4002 -6.0122 32 1 4.3196 -2.6574 -6.4390 33 1 2.0656 -3.5153 -4.8504 34 1 2.8341 -1.8819 -4.6489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:24 Heat of formation + Delta-G solvation = -42.671019 kcal Electronic energy + Delta-G solvation = -18032.242772 eV Core-core repulsion = 15038.503441 eV Total energy + Delta-G solvation = -2993.739330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.40168 -40.07445 -38.18084 -35.69874 -33.43843 -31.54180 -29.22712 -27.54214 -25.63223 -25.25489 -23.23460 -21.90680 -20.64157 -19.43070 -17.95019 -16.77236 -16.59644 -16.33009 -15.42199 -15.13581 -14.79539 -14.39578 -14.20391 -13.98593 -13.19001 -12.90705 -12.64663 -12.39633 -12.26856 -11.94534 -11.72291 -11.52075 -11.26577 -11.13936 -10.81310 -10.49893 -10.38771 -10.05351 -10.02683 -9.88593 -9.36319 -8.53848 -8.37633 -7.43905 -6.03259 -4.01076 1.66563 1.74113 3.31821 3.38878 3.41759 3.65004 4.09828 4.45185 4.57892 4.60478 4.72434 4.84410 4.88125 5.11120 5.15193 5.30741 5.36416 5.60115 5.63695 5.79735 5.80292 5.84858 5.99381 6.05151 6.14791 6.32144 6.40994 6.53892 6.62139 6.72275 7.03110 7.24777 7.39477 7.71707 7.95307 8.52516 9.00831 9.56970 11.09900 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.009785 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.078032 B = 2860.892557 C = 4614.524221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.034 4.034 11 C -0.120 4.120 12 C 0.054 3.946 13 F -0.150 7.150 14 C -0.138 4.138 15 C -0.188 4.188 16 C 0.122 3.878 17 O -0.277 6.277 18 C 0.053 3.947 19 C -0.157 4.157 20 C -0.141 4.141 21 C -0.130 4.130 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.033 0.967 25 H 0.138 0.862 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.416 -8.145 -7.441 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.542 4.542 8 H 0.090 0.910 9 C -0.015 4.015 10 C -0.035 4.035 11 C -0.139 4.139 12 C 0.035 3.965 13 F -0.129 7.129 14 C -0.157 4.157 15 C -0.207 4.207 16 C 0.077 3.923 17 O -0.190 6.190 18 C -0.004 4.004 19 C -0.195 4.195 20 C -0.179 4.179 21 C -0.167 4.167 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.156 0.844 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.206 -7.841 -7.437 14.864 hybrid contribution 0.372 0.455 0.170 0.612 sum 10.578 -7.386 -7.267 14.808 Atomic orbital electron populations 1.69898 1.06201 1.26833 1.51076 1.24944 0.94705 0.98866 0.94610 0.86830 0.80392 0.83802 0.78626 1.20165 1.21339 1.18964 1.20835 0.87975 0.94583 1.50763 0.90983 1.18688 0.97644 0.87479 0.97652 1.19554 0.96088 0.99111 0.88713 1.20900 1.00662 0.93207 0.99129 1.17552 1.05239 0.92590 0.81167 1.91425 1.90953 1.83665 1.46875 1.20635 1.03931 1.00180 0.90956 1.20946 1.06397 0.95028 0.98351 1.18872 0.95828 0.91120 0.86512 1.86354 1.82905 1.37005 1.12732 1.24102 0.97426 0.95664 0.83241 1.23521 0.97016 1.03144 0.95774 1.22656 0.96857 1.01773 0.96566 1.23154 0.97439 1.03222 0.92921 0.92697 0.95354 0.94930 0.84443 0.85525 0.85273 0.88733 0.88972 0.91287 0.90066 0.90667 0.90644 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.50 -14.40 9.65 -34.44 -0.33 -14.73 16 8 H 0.07 2.26 7.98 -52.48 -0.42 1.84 16 9 C 0.02 0.55 3.89 -29.03 -0.11 0.43 16 10 C -0.03 -0.73 5.08 -104.48 -0.53 -1.26 16 11 C -0.12 -2.34 9.65 -39.54 -0.38 -2.72 16 12 C 0.05 0.95 7.30 -39.42 -0.29 0.66 16 13 F -0.15 -2.59 17.27 2.25 0.04 -2.55 16 14 C -0.14 -2.17 10.02 -39.53 -0.40 -2.57 16 15 C -0.19 -3.03 9.01 -39.44 -0.36 -3.38 16 16 C 0.12 2.38 6.65 -39.23 -0.26 2.11 16 17 O -0.28 -5.37 9.28 -19.57 -0.18 -5.55 16 18 C 0.05 0.76 3.63 -25.92 -0.09 0.66 16 19 C -0.16 -1.83 7.91 -25.92 -0.21 -2.04 16 20 C -0.14 -1.43 8.08 -25.92 -0.21 -1.64 16 21 C -0.13 -1.70 7.91 -25.92 -0.21 -1.91 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 24 H 0.03 0.80 7.12 -51.93 -0.37 0.43 16 25 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.13 1.67 5.95 -52.49 -0.31 1.36 16 28 H 0.10 1.22 6.05 -51.93 -0.31 0.90 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -31.09 290.48 -7.46 -38.55 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.33 Total: -0.37 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -3.47 Total: -24.44 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.18 Total: -5.55 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.09 -7.46 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds