Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00220 * 2 1 4 4 H 1.48507 * 109.47047 * 270.00097 * 3 2 1 5 5 H 1.48506 * 109.46989 * 29.99682 * 3 2 1 6 6 H 1.48495 * 109.47059 * 150.00209 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99575 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00164 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47211 * 179.97438 * 9 7 2 11 11 C 1.38166 * 120.01769 * 264.72585 * 10 9 7 12 12 C 1.38434 * 120.03518 * 180.29779 * 11 10 9 13 13 F 1.35093 * 119.97354 * 179.97438 * 12 11 10 14 14 C 1.38482 * 120.05559 * 359.95356 * 12 11 10 15 15 C 1.38127 * 120.03181 * 0.04258 * 14 12 11 16 16 C 1.38688 * 120.01230 * 84.99596 * 10 9 7 17 17 O 1.35946 * 120.03410 * 359.74773 * 16 10 9 18 18 C 1.42898 * 117.00447 * 186.03014 * 17 16 10 19 19 C 1.53778 * 113.61664 * 255.35330 * 18 17 16 20 20 C 1.53784 * 87.08067 * 220.01670 * 19 18 17 21 21 C 1.53783 * 113.61572 * 157.85040 * 18 17 16 22 22 H 0.96997 * 119.99586 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46952 * 59.99349 * 9 7 2 24 24 H 1.08998 * 109.46613 * 299.99678 * 9 7 2 25 25 H 1.08000 * 119.98326 * 0.26914 * 11 10 9 26 26 H 1.08000 * 119.98184 * 180.02562 * 14 12 11 27 27 H 1.08001 * 120.01614 * 179.97438 * 15 14 12 28 28 H 1.09006 * 112.84492 * 26.65860 * 18 17 16 29 29 H 1.08998 * 113.61492 * 334.56956 * 19 18 17 30 30 H 1.09001 * 113.61559 * 105.47147 * 19 18 17 31 31 H 1.09003 * 113.61164 * 270.88555 * 20 19 18 32 32 H 1.08997 * 113.61289 * 139.97756 * 20 19 18 33 33 H 1.08997 * 113.61609 * 254.53270 * 21 18 17 34 34 H 1.08998 * 113.60922 * 25.35579 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 -0.0001 11 6 4.3475 -3.2302 1.1912 12 6 4.8148 -4.5333 1.1909 13 9 5.1411 -5.1335 2.3564 14 6 4.9476 -5.2222 -0.0030 15 6 4.6147 -4.6096 -1.1954 16 6 4.1468 -3.3036 -1.1965 17 8 3.8192 -2.6993 -2.3694 18 6 3.8540 -3.5074 -3.5475 19 6 5.0754 -3.2394 -4.4426 20 6 4.1263 -3.3782 -5.6446 21 6 2.9905 -2.9596 -4.6960 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6808 0.8904 24 1 3.8751 -0.6797 -0.8895 25 1 4.2440 -2.6941 2.1230 26 1 5.3119 -6.2389 -0.0018 27 1 4.7188 -5.1470 -2.1264 28 1 3.6860 -4.5644 -3.3407 29 1 5.4901 -2.2380 -4.3270 30 1 5.8335 -4.0210 -4.3924 31 1 4.0338 -4.4002 -6.0122 32 1 4.3196 -2.6574 -6.4390 33 1 2.0656 -3.5153 -4.8504 34 1 2.8341 -1.8819 -4.6489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = -60.366629 kcal Electronic energy + Delta-G solvation = -18033.010111 eV Core-core repulsion = 15038.503441 eV Total energy + Delta-G solvation = -2994.506670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.76868 -41.35928 -39.38627 -36.95613 -35.41450 -33.40419 -30.69988 -29.29367 -26.60643 -26.32103 -25.07761 -23.22184 -22.24749 -20.48188 -19.23759 -18.98328 -18.01653 -17.70366 -16.61547 -16.38740 -16.28543 -15.98078 -15.56445 -15.31815 -14.90782 -14.56984 -14.10130 -13.84915 -13.41827 -13.36005 -13.31376 -12.94963 -12.73359 -12.42493 -12.25878 -12.03069 -11.89492 -11.68528 -11.50229 -11.23226 -11.07156 -10.77735 -9.85743 -8.86912 -8.28756 -6.32011 0.26422 0.32826 1.34957 1.36254 1.48021 2.35234 2.39369 2.69530 3.05495 3.36156 3.59591 3.64016 3.80158 3.81928 3.90371 3.96289 4.19077 4.32575 4.49870 4.71465 4.79363 4.82731 4.88910 4.94940 5.01458 5.05551 5.10653 5.15665 5.17383 5.26512 5.42916 5.56263 5.66265 5.87262 6.24761 6.65163 6.71156 7.29812 8.87975 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.009785 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.078032 B = 2860.892557 C = 4614.524221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.507 4.507 8 H 0.025 0.975 9 C 0.032 3.968 10 C -0.078 4.078 11 C -0.129 4.129 12 C 0.045 3.955 13 F -0.147 7.147 14 C -0.118 4.118 15 C -0.177 4.177 16 C 0.111 3.889 17 O -0.312 6.312 18 C 0.032 3.968 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.144 4.144 22 H 0.267 0.733 23 H 0.031 0.969 24 H 0.028 0.972 25 H 0.135 0.865 26 H 0.168 0.832 27 H 0.168 0.832 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 -9.509 -8.704 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.545 4.545 8 H 0.044 0.956 9 C -0.005 4.005 10 C -0.078 4.078 11 C -0.148 4.148 12 C 0.026 3.974 13 F -0.126 7.126 14 C -0.136 4.136 15 C -0.195 4.195 16 C 0.066 3.934 17 O -0.225 6.225 18 C -0.023 4.023 19 C -0.187 4.187 20 C -0.157 4.157 21 C -0.181 4.181 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.153 0.847 26 H 0.186 0.814 27 H 0.185 0.815 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.513 -9.221 -8.704 17.814 hybrid contribution -0.392 0.740 0.533 0.993 sum 12.121 -8.481 -8.170 16.900 Atomic orbital electron populations 1.70052 1.08141 1.28086 1.52681 1.25898 0.95588 1.03107 0.94158 0.85715 0.79601 0.78502 0.79221 1.19277 1.20622 1.17018 1.21030 0.90477 0.92840 1.50187 0.95635 1.18439 0.94553 0.90210 0.97273 1.19407 0.99466 0.98283 0.90680 1.20917 1.01036 0.94388 0.98483 1.17617 1.05587 0.92106 0.82134 1.91432 1.90919 1.83387 1.46893 1.21098 1.01372 1.01514 0.89649 1.21303 1.04507 0.93525 1.00148 1.19064 0.95952 0.92367 0.86039 1.86313 1.83147 1.39169 1.13907 1.24636 0.99622 0.96190 0.81882 1.23469 0.96761 1.03210 0.95293 1.22642 0.93836 1.03464 0.95774 1.23242 0.98895 1.01790 0.94194 0.92451 0.95072 0.95363 0.84749 0.81419 0.81486 0.86901 0.90360 0.88839 0.87443 0.89561 0.90313 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 45.33 27.47 68.60 1.88 47.21 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.51 -30.39 9.65 25.60 0.25 -30.14 16 8 H 0.03 1.71 7.98 -2.91 -0.02 1.68 16 9 C 0.03 1.62 3.89 29.10 0.11 1.74 16 10 C -0.08 -3.39 5.08 -19.77 -0.10 -3.49 16 11 C -0.13 -5.08 9.65 22.30 0.22 -4.87 16 12 C 0.04 1.51 7.30 22.37 0.16 1.67 16 13 F -0.15 -4.80 17.27 44.97 0.78 -4.03 16 14 C -0.12 -3.29 10.02 22.30 0.22 -3.07 16 15 C -0.18 -5.14 9.01 22.36 0.20 -4.94 16 16 C 0.11 4.29 6.65 22.50 0.15 4.44 16 17 O -0.31 -12.15 9.28 -92.94 -0.86 -13.02 16 18 C 0.03 0.88 3.63 31.12 0.11 0.99 16 19 C -0.15 -3.10 7.91 31.12 0.25 -2.86 16 20 C -0.12 -2.07 8.08 31.12 0.25 -1.82 16 21 C -0.14 -3.67 7.91 31.12 0.25 -3.43 16 22 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 23 H 0.03 1.50 7.11 -2.39 -0.02 1.49 16 24 H 0.03 1.41 7.12 -2.39 -0.02 1.39 16 25 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 26 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.17 3.53 5.95 -2.91 -0.02 3.51 16 28 H 0.11 2.57 6.05 -2.38 -0.01 2.56 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.86 290.48 5.67 -65.19 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.04 Total: 9.72 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 2.53 Total: -44.76 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.30 Total: -60.32 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.86 Total: -13.02 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.78 Total: -4.03 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -70.86 5.67 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.823 kcal (2) G-P(sol) polarization free energy of solvation -70.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds