Wall clock time and date at job start Mon Mar 30 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38686 * 120.02975 * 359.72448 * 3 2 1 5 5 C 1.38213 * 120.07577 * 179.75816 * 4 3 2 6 6 C 1.50698 * 119.91217 * 180.27396 * 5 4 3 7 7 H 1.08997 * 109.47307 * 180.26569 * 6 5 4 8 8 C 1.52997 * 109.47365 * 60.25731 * 6 5 4 9 9 C 1.50709 * 109.46452 * 300.26156 * 6 5 4 10 10 H 1.08001 * 120.00063 * 0.02562 * 9 6 5 11 11 C 1.37877 * 119.99490 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00390 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99643 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.47126 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46824 * 120.00130 * 13 11 9 16 16 H 1.48499 * 109.47134 * 239.99854 * 13 11 9 17 17 C 1.38238 * 120.17849 * 0.53220 * 5 4 3 18 18 C 1.38644 * 120.13004 * 359.71632 * 17 5 4 19 19 C 1.38939 * 120.02781 * 180.02562 * 3 2 1 20 20 O 1.36596 * 131.52614 * 359.97438 * 19 3 2 21 21 C 1.43998 * 105.45580 * 162.74007 * 20 19 3 22 22 O 1.36517 * 131.48084 * 180.02562 * 18 17 5 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 26 26 H 1.07997 * 119.96307 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.46866 * 60.00603 * 8 6 5 28 28 H 1.08996 * 109.47193 * 180.02562 * 8 6 5 29 29 H 1.08997 * 109.47592 * 300.00664 * 8 6 5 30 30 H 0.96996 * 119.99796 * 180.02562 * 12 11 9 31 31 H 1.08005 * 119.93527 * 179.73872 * 17 5 4 32 32 H 1.09005 * 110.57712 * 268.53472 * 21 20 19 33 33 H 1.08997 * 110.70242 * 145.71555 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2916 2.3752 -0.0058 5 6 1.9180 3.6072 -0.0007 6 6 1.0943 4.8691 -0.0008 7 1 1.7561 5.7351 -0.0012 8 6 0.2118 4.9022 1.2486 9 6 0.2245 4.9010 -1.2312 10 1 0.2640 4.0886 -1.9416 11 6 -0.6225 5.9669 -1.4491 12 7 -0.6710 6.9560 -0.5837 13 14 -1.7000 6.0068 -2.9745 14 1 -1.4592 4.7846 -3.7828 15 1 -3.1281 6.0591 -2.5704 16 1 -1.3699 7.2083 -3.7825 17 6 3.2982 3.6851 -0.0010 18 6 4.0606 2.5271 -0.0004 19 6 3.4339 1.2852 -0.0005 20 8 4.3922 0.3119 -0.0007 21 6 5.6057 0.9682 -0.4131 22 8 5.4121 2.3342 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2132 2.3185 -0.0099 27 1 0.8408 4.8791 2.1384 28 1 -0.3844 5.8147 1.2483 29 1 -0.4501 4.0362 1.2490 30 1 -1.2671 7.7057 -0.7369 31 1 3.7836 4.6499 -0.0013 32 1 5.7255 0.9077 -1.4948 33 1 6.4690 0.5346 0.0916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:31 Heat of formation + Delta-G solvation = -78.088947 kcal Electronic energy + Delta-G solvation = -18384.755739 eV Core-core repulsion = 15377.107782 eV Total energy + Delta-G solvation = -3007.647957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.74671 -39.15101 -37.02061 -35.75395 -33.86463 -31.16365 -29.37736 -28.37696 -26.92720 -25.36987 -25.15851 -22.85885 -21.95276 -20.25535 -17.82652 -17.35706 -17.24965 -16.59416 -16.01418 -15.35901 -15.13714 -14.73733 -14.62893 -13.92200 -13.50174 -12.98460 -12.74663 -12.59270 -12.42761 -12.26824 -11.53944 -11.25585 -11.14192 -11.04333 -11.01542 -10.96976 -10.46668 -10.19411 -9.86649 -9.63038 -8.98692 -8.45824 -7.80263 -7.41525 -6.09083 -4.16561 1.67399 1.84086 3.10785 3.23914 3.32768 3.36536 3.51205 3.78052 4.15744 4.38272 4.89834 5.06048 5.17130 5.21949 5.26976 5.43352 5.57912 5.60180 5.72526 5.76034 5.93924 6.08963 6.55365 6.71907 6.75349 6.84739 6.99941 7.15930 7.16536 7.30349 7.63453 7.76385 7.86605 8.00453 8.28228 8.86053 9.48646 10.96577 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.006778 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.871338 B = 4129.827752 C = 4610.205011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.145 3.855 4 C -0.188 4.188 5 C 0.020 3.980 6 C 0.073 3.927 7 H 0.041 0.959 8 C -0.132 4.132 9 C -0.510 4.510 10 H 0.059 0.941 11 C 0.063 3.937 12 N -0.888 5.888 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.143 4.143 18 C 0.066 3.934 19 C -0.038 4.038 20 O -0.308 6.308 21 C 0.213 3.787 22 O -0.312 6.312 23 H 0.095 0.905 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.145 0.855 27 H 0.011 0.989 28 H 0.088 0.912 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -10.042 1.159 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.099 3.901 4 C -0.207 4.207 5 C 0.020 3.980 6 C 0.054 3.946 7 H 0.059 0.941 8 C -0.190 4.190 9 C -0.548 4.548 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.162 4.162 18 C 0.022 3.978 19 C -0.081 4.081 20 O -0.225 6.225 21 C 0.101 3.899 22 O -0.229 6.229 23 H 0.113 0.887 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.031 0.969 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.559 -10.156 1.292 11.649 hybrid contribution -0.581 0.079 -0.945 1.112 sum 4.978 -10.076 0.347 11.244 Atomic orbital electron populations 1.23060 0.78329 1.03350 1.02087 1.86069 1.21376 1.26545 1.89194 1.17880 0.87124 0.85365 0.99710 1.20991 1.00546 0.90134 1.09009 1.20305 0.91696 0.96943 0.89103 1.17940 0.93150 0.88183 0.95302 0.94088 1.21796 0.99372 1.02808 0.95019 1.21121 1.22133 1.05851 1.05716 0.92247 1.24948 0.96945 0.95398 0.96526 1.69886 1.38327 1.09174 1.35230 0.86521 0.80228 0.78127 0.83086 1.19728 1.20953 1.20924 1.20068 0.92532 0.95369 1.08239 1.19498 0.81659 0.94085 1.02570 1.18587 0.88507 0.86339 1.14709 1.87339 1.17266 1.32136 1.85793 1.25449 0.89052 0.75835 0.99568 1.87322 1.20173 1.30435 1.84943 0.88672 0.92417 0.92179 0.83741 0.96947 0.89346 0.95247 0.92860 0.85019 0.90641 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.57 10.50 -19.72 -0.21 -5.77 16 3 C 0.14 2.78 6.69 -39.16 -0.26 2.51 16 4 C -0.19 -3.72 7.68 -39.43 -0.30 -4.02 16 5 C 0.02 0.42 4.74 -104.63 -0.50 -0.07 16 6 C 0.07 1.73 2.48 -92.92 -0.23 1.50 16 7 H 0.04 1.05 7.87 -51.93 -0.41 0.64 16 8 C -0.13 -3.03 8.78 37.16 0.33 -2.70 16 9 C -0.51 -13.25 8.23 -34.44 -0.28 -13.53 16 10 H 0.06 1.54 7.59 -52.49 -0.40 1.15 16 11 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 13 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.14 -2.86 9.68 -39.43 -0.38 -3.24 16 18 C 0.07 1.26 7.15 -39.11 -0.28 0.98 16 19 C -0.04 -0.73 7.09 -39.00 -0.28 -1.01 16 20 O -0.31 -5.43 11.41 -46.30 -0.53 -5.96 16 21 C 0.21 2.89 8.89 101.05 0.90 3.79 16 22 O -0.31 -5.31 11.40 -45.75 -0.52 -5.84 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 25 H 0.06 0.78 7.65 -51.93 -0.40 0.39 16 26 H 0.15 2.74 5.81 -52.49 -0.30 2.44 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 29 H 0.03 0.63 7.39 -51.93 -0.38 0.24 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.13 2.47 7.94 -52.48 -0.42 2.05 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -29.46 280.89 -5.66 -35.12 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.85 Total: -0.78 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.39 Total: -12.86 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.26 Total: -17.57 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.46 -5.66 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.970 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds