Wall clock time and date at job start Mon Mar 30 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38686 * 120.02975 * 359.72448 * 3 2 1 5 5 C 1.38213 * 120.07577 * 179.75816 * 4 3 2 6 6 C 1.50698 * 119.91217 * 180.27396 * 5 4 3 7 7 H 1.08997 * 109.47307 * 180.26569 * 6 5 4 8 8 C 1.52997 * 109.47365 * 60.25731 * 6 5 4 9 9 C 1.50709 * 109.46452 * 300.26156 * 6 5 4 10 10 H 1.08001 * 120.00063 * 0.02562 * 9 6 5 11 11 C 1.37877 * 119.99490 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00390 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99643 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.47126 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46824 * 120.00130 * 13 11 9 16 16 H 1.48499 * 109.47134 * 239.99854 * 13 11 9 17 17 C 1.38238 * 120.17849 * 0.53220 * 5 4 3 18 18 C 1.38644 * 120.13004 * 359.71632 * 17 5 4 19 19 C 1.38939 * 120.02781 * 180.02562 * 3 2 1 20 20 O 1.36596 * 131.52614 * 359.97438 * 19 3 2 21 21 C 1.43998 * 105.45580 * 162.74007 * 20 19 3 22 22 O 1.36517 * 131.48084 * 180.02562 * 18 17 5 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 26 26 H 1.07997 * 119.96307 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.46866 * 60.00603 * 8 6 5 28 28 H 1.08996 * 109.47193 * 180.02562 * 8 6 5 29 29 H 1.08997 * 109.47592 * 300.00664 * 8 6 5 30 30 H 0.96996 * 119.99796 * 180.02562 * 12 11 9 31 31 H 1.08005 * 119.93527 * 179.73872 * 17 5 4 32 32 H 1.09005 * 110.57712 * 268.53472 * 21 20 19 33 33 H 1.08997 * 110.70242 * 145.71555 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2916 2.3752 -0.0058 5 6 1.9180 3.6072 -0.0007 6 6 1.0943 4.8691 -0.0008 7 1 1.7561 5.7351 -0.0012 8 6 0.2118 4.9022 1.2486 9 6 0.2245 4.9010 -1.2312 10 1 0.2640 4.0886 -1.9416 11 6 -0.6225 5.9669 -1.4491 12 7 -0.6710 6.9560 -0.5837 13 14 -1.7000 6.0068 -2.9745 14 1 -1.4592 4.7846 -3.7828 15 1 -3.1281 6.0591 -2.5704 16 1 -1.3699 7.2083 -3.7825 17 6 3.2982 3.6851 -0.0010 18 6 4.0606 2.5271 -0.0004 19 6 3.4339 1.2852 -0.0005 20 8 4.3922 0.3119 -0.0007 21 6 5.6057 0.9682 -0.4131 22 8 5.4121 2.3342 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2132 2.3185 -0.0099 27 1 0.8408 4.8791 2.1384 28 1 -0.3844 5.8147 1.2483 29 1 -0.4501 4.0362 1.2490 30 1 -1.2671 7.7057 -0.7369 31 1 3.7836 4.6499 -0.0013 32 1 5.7255 0.9077 -1.4948 33 1 6.4690 0.5346 0.0916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:31 Heat of formation + Delta-G solvation = -96.013257 kcal Electronic energy + Delta-G solvation = -18385.532995 eV Core-core repulsion = 15377.107782 eV Total energy + Delta-G solvation = -3008.425213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.09549 -40.51878 -38.54233 -37.08604 -35.66545 -32.97534 -30.82642 -29.89343 -28.12556 -27.19849 -26.54168 -24.45040 -23.38632 -21.93071 -19.20408 -18.89522 -18.61835 -18.11296 -17.57111 -16.78570 -16.58889 -16.34026 -15.98824 -15.28139 -15.03633 -14.71032 -14.31780 -13.92410 -13.77514 -13.74837 -13.33787 -12.89190 -12.81552 -12.61476 -12.47948 -12.24558 -12.20246 -12.09109 -11.48132 -11.40011 -10.84078 -10.46471 -9.26276 -8.89350 -8.08758 -6.22765 0.17120 0.32582 1.42745 1.46135 1.56173 1.78717 2.24668 2.43757 2.56941 2.65998 3.19875 3.73365 3.87118 3.95193 4.04061 4.21423 4.33892 4.41257 4.43549 4.47862 4.63520 4.75390 4.88898 5.01819 5.08908 5.21648 5.25841 5.43747 5.49315 5.65674 5.91296 6.01443 6.06638 6.33214 6.40106 6.85142 7.45332 8.95960 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.006778 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.871338 B = 4129.827752 C = 4610.205011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.144 3.856 4 C -0.189 4.189 5 C 0.003 3.997 6 C 0.074 3.926 7 H 0.014 0.986 8 C -0.123 4.123 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.018 3.982 12 N -0.915 5.915 13 Si 0.952 3.048 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.283 1.283 17 C -0.154 4.154 18 C 0.068 3.932 19 C -0.044 4.044 20 O -0.320 6.320 21 C 0.204 3.796 22 O -0.319 6.319 23 H 0.130 0.870 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.149 0.851 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -11.723 0.658 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.098 3.902 4 C -0.207 4.207 5 C 0.002 3.998 6 C 0.056 3.944 7 H 0.033 0.967 8 C -0.181 4.181 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.181 4.181 12 N -0.554 5.554 13 Si 0.778 3.222 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.209 1.209 17 C -0.173 4.173 18 C 0.023 3.977 19 C -0.088 4.088 20 O -0.237 6.237 21 C 0.093 3.907 22 O -0.236 6.236 23 H 0.148 0.852 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.166 0.834 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.895 -11.854 0.789 13.262 hybrid contribution -0.591 0.505 -0.781 1.101 sum 5.304 -11.349 0.008 12.527 Atomic orbital electron populations 1.23391 0.76135 1.05777 1.02322 1.86068 1.23616 1.25569 1.88845 1.17902 0.87417 0.85736 0.99119 1.20947 1.00786 0.89891 1.09100 1.20039 0.92096 0.96333 0.91286 1.17781 0.92893 0.88679 0.95087 0.96742 1.21648 0.99247 1.01816 0.95368 1.21365 1.22437 1.05704 1.06384 0.92685 1.25655 0.98185 0.95148 0.99075 1.70004 1.39037 1.09659 1.36698 0.85590 0.78705 0.78013 0.79879 1.19253 1.20380 1.20934 1.20049 0.92342 0.96078 1.08796 1.19453 0.82655 0.93696 1.01866 1.18793 0.89040 0.86860 1.14106 1.87316 1.18047 1.32354 1.85995 1.26107 0.88789 0.74053 1.01743 1.87308 1.18803 1.32472 1.85001 0.85218 0.91868 0.92241 0.83365 0.95497 0.91790 0.94408 0.92824 0.84790 0.88310 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.33 -10.88 10.50 -93.49 -0.98 -11.86 16 3 C 0.14 5.38 6.69 22.54 0.15 5.53 16 4 C -0.19 -7.37 7.68 22.37 0.17 -7.20 16 5 C 0.00 0.12 4.74 -19.87 -0.09 0.03 16 6 C 0.07 3.61 2.48 -12.28 -0.03 3.58 16 7 H 0.01 0.77 7.87 -2.39 -0.02 0.75 16 8 C -0.12 -5.70 8.78 71.98 0.63 -5.07 16 9 C -0.52 -27.33 8.23 25.60 0.21 -27.12 16 10 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 11 C 0.02 0.98 5.30 84.65 0.45 1.42 16 12 N -0.91 -50.61 11.32 21.45 0.24 -50.37 16 13 Si 0.95 41.91 29.54 68.60 2.03 43.93 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 17 C -0.15 -6.16 9.68 22.37 0.22 -5.94 16 18 C 0.07 2.54 7.15 22.58 0.16 2.70 16 19 C -0.04 -1.64 7.09 22.65 0.16 -1.48 16 20 O -0.32 -10.53 11.41 -76.90 -0.88 -11.41 16 21 C 0.20 4.90 8.89 113.37 1.01 5.91 16 22 O -0.32 -10.25 11.40 -76.25 -0.87 -11.12 16 23 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.06 1.47 7.67 -2.38 -0.02 1.45 16 25 H 0.06 1.45 7.65 -2.39 -0.02 1.44 16 26 H 0.15 5.55 5.81 -2.91 -0.02 5.53 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 29 H 0.04 1.63 7.39 -2.39 -0.02 1.61 16 30 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.13 5.14 7.94 -2.91 -0.02 5.11 16 32 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.17 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -62.71 280.89 4.81 -57.90 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.12 Total: 9.02 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.15 Total: -26.09 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -2.73 Total: -34.39 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -62.71 4.81 -57.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.116 kcal (2) G-P(sol) polarization free energy of solvation -62.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds