Wall clock time and date at job start Mon Mar 30 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38681 * 120.03171 * 359.72672 * 3 2 1 5 5 C 1.38213 * 120.07981 * 179.67122 * 4 3 2 6 6 C 1.50690 * 119.91271 * 180.29899 * 5 4 3 7 7 H 1.09005 * 109.47403 * 180.32716 * 6 5 4 8 8 C 1.52998 * 109.47327 * 300.32707 * 6 5 4 9 9 C 1.50702 * 109.47146 * 60.32452 * 6 5 4 10 10 H 1.07995 * 119.99927 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00067 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99938 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 120.00029 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47158 * 59.99639 * 13 11 9 15 15 H 1.48501 * 109.46973 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46781 * 299.99720 * 13 11 9 17 17 C 1.38248 * 120.17510 * 0.62777 * 5 4 3 18 18 C 1.38643 * 120.13056 * 359.66974 * 17 5 4 19 19 C 1.38939 * 120.02781 * 179.97438 * 3 2 1 20 20 O 1.36595 * 131.52618 * 0.02562 * 19 3 2 21 21 C 1.43995 * 105.45993 * 197.26381 * 20 19 3 22 22 O 1.36507 * 131.48145 * 180.02562 * 18 17 5 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00191 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00239 * 1 2 3 26 26 H 1.08002 * 119.96193 * 359.97438 * 4 3 2 27 27 H 1.09004 * 109.47656 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.47001 * 299.99709 * 8 6 5 29 29 H 1.08997 * 109.47491 * 59.99696 * 8 6 5 30 30 H 0.96995 * 119.99659 * 179.97438 * 12 11 9 31 31 H 1.08000 * 119.93031 * 179.65979 * 17 5 4 32 32 H 1.09001 * 110.57662 * 91.46130 * 21 20 19 33 33 H 1.08998 * 110.57543 * 214.35065 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3752 -0.0057 5 6 1.9180 3.6072 0.0011 6 6 1.0943 4.8690 0.0017 7 1 1.7561 5.7351 0.0016 8 6 0.2111 4.9021 -1.2472 9 6 0.2252 4.9010 1.2325 10 1 0.2657 4.0891 1.9433 11 6 -0.6217 5.9669 1.4509 12 7 -0.6707 6.9560 0.5854 13 14 -1.6984 6.0069 2.9769 14 1 -0.8408 5.9758 4.1887 15 1 -2.5103 7.2504 2.9773 16 1 -2.5997 4.8267 2.9777 17 6 3.2983 3.6851 0.0006 18 6 4.0607 2.5271 0.0001 19 6 3.4339 1.2852 0.0005 20 8 4.3922 0.3119 0.0007 21 6 5.6057 0.9681 0.4132 22 8 5.4121 2.3342 0.0001 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2132 2.3185 -0.0106 27 1 -0.3845 5.8150 -1.2471 28 1 0.8396 4.8790 -2.1374 29 1 -0.4508 4.0361 -1.2472 30 1 -1.2667 7.7056 0.7390 31 1 3.7836 4.6499 0.0004 32 1 5.7254 0.9075 1.4949 33 1 6.4675 0.5337 -0.0936 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:33 Heat of formation + Delta-G solvation = -78.025037 kcal Electronic energy + Delta-G solvation = -18384.284328 eV Core-core repulsion = 15376.639143 eV Total energy + Delta-G solvation = -3007.645185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.74669 -39.15117 -37.02039 -35.75396 -33.86273 -31.16347 -29.37735 -28.37425 -26.92721 -25.36631 -25.15729 -22.85873 -21.95165 -20.25463 -17.82687 -17.35606 -17.24813 -16.58998 -16.01486 -15.35779 -15.13342 -14.73847 -14.63291 -13.92394 -13.50595 -12.97964 -12.73933 -12.59309 -12.42975 -12.26619 -11.52908 -11.26405 -11.14372 -11.04382 -11.01276 -10.93958 -10.51454 -10.18399 -9.86442 -9.62603 -9.00367 -8.44900 -7.80285 -7.41521 -6.08612 -4.16265 1.67310 1.84158 3.10836 3.26473 3.31836 3.34488 3.51191 3.78213 4.15659 4.38380 4.89952 5.05812 5.17174 5.22166 5.27022 5.43381 5.57948 5.60209 5.72589 5.76021 5.93931 6.08970 6.55364 6.71935 6.75562 6.84719 6.99918 7.15981 7.16653 7.30347 7.63314 7.76425 7.86807 8.00473 8.28455 8.85761 9.48758 10.96982 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.006778 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.207185 B = 4130.126904 C = 4610.034698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.145 3.855 4 C -0.189 4.189 5 C 0.020 3.980 6 C 0.073 3.927 7 H 0.041 0.959 8 C -0.132 4.132 9 C -0.512 4.512 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.143 4.143 18 C 0.066 3.934 19 C -0.038 4.038 20 O -0.308 6.308 21 C 0.213 3.787 22 O -0.312 6.312 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.145 0.855 27 H 0.088 0.912 28 H 0.011 0.989 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -10.012 -1.174 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.099 3.901 4 C -0.207 4.207 5 C 0.020 3.980 6 C 0.055 3.945 7 H 0.059 0.941 8 C -0.190 4.190 9 C -0.550 4.550 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.162 4.162 18 C 0.022 3.978 19 C -0.082 4.082 20 O -0.225 6.225 21 C 0.101 3.899 22 O -0.229 6.229 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.162 0.838 27 H 0.107 0.893 28 H 0.030 0.970 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.540 -10.116 -1.312 11.608 hybrid contribution -0.576 0.055 0.962 1.122 sum 4.964 -10.062 -0.350 11.225 Atomic orbital electron populations 1.23059 0.78325 1.03349 1.02089 1.86069 1.21377 1.26545 1.89194 1.17882 0.87119 0.85361 0.99700 1.20992 1.00541 0.90142 1.09047 1.20306 0.91694 0.96945 0.89074 1.17926 0.93123 0.88175 0.95272 0.94100 1.21801 0.99380 1.02802 0.95016 1.21038 1.22322 1.05898 1.05725 0.92369 1.24943 0.96918 0.95380 0.96518 1.69866 1.38326 1.09149 1.35272 0.86628 0.80450 0.77373 0.83416 1.20209 1.21205 1.20229 1.20069 0.92535 0.95369 1.08247 1.19497 0.81660 0.94085 1.02548 1.18589 0.88507 0.86337 1.14730 1.87341 1.17271 1.32154 1.85775 1.25460 0.89044 0.75835 0.99564 1.87322 1.20172 1.30442 1.84945 0.88671 0.92180 0.92419 0.83751 0.89348 0.96955 0.95241 0.92742 0.85020 0.90613 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.57 10.50 -19.72 -0.21 -5.77 16 3 C 0.14 2.78 6.69 -39.16 -0.26 2.52 16 4 C -0.19 -3.73 7.70 -39.43 -0.30 -4.03 16 5 C 0.02 0.43 4.74 -104.63 -0.50 -0.06 16 6 C 0.07 1.75 2.48 -92.93 -0.23 1.52 16 7 H 0.04 1.04 7.87 -51.93 -0.41 0.64 16 8 C -0.13 -3.03 8.78 37.16 0.33 -2.70 16 9 C -0.51 -13.31 8.24 -34.44 -0.28 -13.59 16 10 H 0.06 1.51 7.61 -52.49 -0.40 1.11 16 11 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 12 N -0.89 -24.21 11.32 55.43 0.63 -23.59 16 13 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 C -0.14 -2.86 9.68 -39.43 -0.38 -3.24 16 18 C 0.07 1.27 7.15 -39.11 -0.28 0.99 16 19 C -0.04 -0.73 7.09 -39.00 -0.28 -1.01 16 20 O -0.31 -5.43 11.41 -46.30 -0.53 -5.96 16 21 C 0.21 2.89 8.89 101.05 0.90 3.79 16 22 O -0.31 -5.32 11.40 -45.71 -0.52 -5.84 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 25 H 0.06 0.72 7.65 -51.93 -0.40 0.33 16 26 H 0.14 2.74 5.78 -52.49 -0.30 2.44 16 27 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.03 0.63 7.36 -51.93 -0.38 0.25 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.13 2.47 7.94 -52.49 -0.42 2.05 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -29.40 280.87 -5.66 -35.06 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.85 Total: -0.71 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.39 Total: -12.88 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.63 Total: -23.59 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.26 Total: -17.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.40 -5.66 -35.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.967 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds