Wall clock time and date at job start Mon Mar 30 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76204 * 100.00013 * 2 1 4 4 N 1.32178 * 119.11749 * 356.30067 * 3 2 1 5 5 C 1.33852 * 120.29881 * 180.02562 * 4 3 2 6 6 C 1.41533 * 120.52641 * 180.16287 * 5 4 3 7 7 H 1.08000 * 119.99667 * 158.55468 * 6 5 4 8 8 C 1.40096 * 119.99985 * 338.54927 * 6 5 4 9 9 N 1.30675 * 120.00070 * 169.97618 * 8 6 5 10 10 Si 1.86803 * 120.00206 * 349.97623 * 8 6 5 11 11 H 1.48504 * 109.46897 * 95.36302 * 10 8 6 12 12 H 1.48499 * 109.47239 * 215.36481 * 10 8 6 13 13 H 1.48502 * 109.47137 * 335.36818 * 10 8 6 14 14 C 1.41335 * 118.94487 * 0.15894 * 5 4 3 15 15 C 1.37558 * 118.43451 * 359.60434 * 14 5 4 16 16 N 1.32588 * 119.11329 * 176.27193 * 3 2 1 17 17 C 1.50487 * 122.53325 * 180.42030 * 15 14 5 18 18 C 1.52787 * 110.31444 * 342.30572 * 17 15 14 19 19 C 1.52868 * 108.74937 * 51.11997 * 18 17 15 20 20 C 1.50329 * 118.69642 * 179.32001 * 14 5 4 21 21 H 1.08998 * 109.47026 * 186.87089 * 1 2 3 22 22 H 1.09003 * 109.46741 * 306.86600 * 1 2 3 23 23 H 1.09002 * 109.47599 * 66.86705 * 1 2 3 24 24 H 0.97004 * 120.00422 * 179.97438 * 9 8 6 25 25 H 1.09006 * 109.30071 * 102.51468 * 17 15 14 26 26 H 1.09006 * 109.30347 * 222.09746 * 17 15 14 27 27 H 1.08995 * 109.63352 * 170.67352 * 18 17 15 28 28 H 1.08998 * 109.63069 * 291.26102 * 18 17 15 29 29 H 1.08997 * 109.70809 * 170.51623 * 19 18 17 30 30 H 1.09001 * 109.83000 * 49.94783 * 19 18 17 31 31 H 1.09004 * 109.30320 * 283.00072 * 20 14 5 32 32 H 1.09001 * 109.31019 * 42.38964 * 20 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0928 2.5688 -0.0745 5 6 1.2981 3.8915 -0.0768 6 6 0.2059 4.7884 -0.1529 7 1 0.3197 5.8077 0.1852 8 6 -1.0228 4.3539 -0.6671 9 7 -2.0813 5.1125 -0.5591 10 14 -1.1480 2.6900 -1.5069 11 1 -1.6104 1.6745 -0.5270 12 1 -2.1179 2.7733 -2.6284 13 1 0.1847 2.2994 -2.0329 14 6 2.6229 4.3782 -0.0019 15 6 3.6514 3.4683 0.0790 16 7 3.3663 2.1698 0.0753 17 6 5.0946 3.8844 0.1719 18 6 5.2573 5.3375 -0.2712 19 6 4.2493 6.1989 0.4895 20 6 2.8480 5.8644 -0.0205 21 1 -0.3633 -1.0203 0.1229 22 1 -0.3633 0.6166 0.8222 23 1 -0.3634 0.4037 -0.9450 24 1 -2.9319 4.8119 -0.9154 25 1 5.4334 3.7819 1.2029 26 1 5.6969 3.2421 -0.4707 27 1 6.2676 5.6783 -0.0453 28 1 5.0720 5.4166 -1.3424 29 1 4.4610 7.2537 0.3142 30 1 4.3114 5.9854 1.5566 31 1 2.7384 6.2327 -1.0405 32 1 2.1076 6.3491 0.6159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:30 Heat of formation + Delta-G solvation = 11.706065 kcal Electronic energy + Delta-G solvation = -16417.474705 eV Core-core repulsion = 13888.766174 eV Total energy + Delta-G solvation = -2528.708531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74960 -36.24392 -34.31415 -32.45570 -30.64421 -29.33399 -28.51629 -26.62733 -23.64046 -22.91484 -21.14179 -19.56515 -17.92896 -16.79157 -16.09501 -15.37421 -14.76865 -14.12546 -13.96383 -13.80468 -13.33773 -13.21863 -12.73905 -12.62435 -12.46676 -11.80225 -11.65525 -11.53270 -11.18190 -11.02453 -10.81275 -10.47354 -10.34990 -10.14331 -9.97590 -9.44436 -9.10654 -8.83549 -8.55480 -7.74128 -7.10694 -6.97365 -5.00034 2.10530 2.15458 2.46034 2.81708 3.20374 3.27325 3.40461 4.11356 4.37128 5.06888 5.23887 5.30221 5.33299 5.50169 5.57953 5.66192 5.84914 6.00451 6.07843 6.13470 6.17304 6.26971 6.29345 6.42901 6.44638 6.54516 6.64936 6.79982 6.85463 7.19897 7.49803 7.89144 8.23865 8.25030 8.63834 9.39630 9.81680 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.011879 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.065997 B = 2356.543778 C = 3690.803132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.062 6.062 3 C 0.325 3.675 4 N -0.596 5.596 5 C 0.270 3.730 6 C -0.399 4.399 7 H 0.105 0.895 8 C 0.088 3.912 9 N -0.789 5.789 10 Si 0.965 3.035 11 H -0.258 1.258 12 H -0.318 1.318 13 H -0.255 1.255 14 C -0.254 4.254 15 C 0.175 3.825 16 N -0.593 5.593 17 C -0.059 4.059 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.046 4.046 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.291 0.709 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -2.021 0.068 5.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.169 5.831 3 C -0.055 4.055 4 N -0.325 5.325 5 C 0.139 3.861 6 C -0.433 4.433 7 H 0.123 0.877 8 C -0.137 4.137 9 N -0.412 5.412 10 Si 0.797 3.203 11 H -0.184 1.184 12 H -0.249 1.249 13 H -0.181 1.181 14 C -0.264 4.264 15 C 0.038 3.962 16 N -0.318 5.318 17 C -0.097 4.097 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.084 4.084 21 H 0.113 0.887 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.949 -3.810 0.088 7.065 hybrid contribution -1.017 1.404 -0.312 1.761 sum 4.932 -2.406 -0.224 5.492 Atomic orbital electron populations 1.23880 0.94840 1.05213 1.06870 1.85027 1.06232 0.98829 1.92973 1.23752 0.88169 0.97864 0.95670 1.68282 1.32308 1.04257 1.27670 1.18731 0.91977 0.87890 0.87498 1.19541 0.92097 0.98497 1.33203 0.87697 1.26346 0.94040 1.00146 0.93144 1.69585 1.00915 1.38014 1.32728 0.85452 0.77460 0.79817 0.77588 1.18420 1.24949 1.18062 1.20600 0.93963 0.96161 1.15626 1.20563 0.94692 0.88301 0.92667 1.68151 1.20176 1.16305 1.27157 1.20180 0.91859 0.95925 1.01753 1.21441 0.98669 0.94604 1.00506 1.21506 0.95713 0.98615 0.99799 1.19939 0.95477 0.92240 1.00758 0.88739 0.88953 0.90067 0.89878 0.90850 0.90768 0.92009 0.91829 0.92234 0.92234 0.92082 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.25 101.05 0.83 -1.68 16 2 S -0.06 -1.25 22.89 -107.50 -2.46 -3.71 16 3 C 0.32 7.89 7.85 -91.14 -0.72 7.17 16 4 N -0.60 -15.14 4.31 -11.35 -0.05 -15.19 16 5 C 0.27 6.89 6.08 -84.55 -0.51 6.38 16 6 C -0.40 -10.38 9.14 -37.63 -0.34 -10.72 16 7 H 0.11 2.74 6.52 -52.49 -0.34 2.39 16 8 C 0.09 2.24 5.52 -17.35 -0.10 2.14 16 9 N -0.79 -20.12 13.92 55.55 0.77 -19.34 16 10 Si 0.97 22.36 22.77 -169.99 -3.87 18.49 16 11 H -0.26 -5.61 5.22 56.52 0.30 -5.32 16 12 H -0.32 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.26 -6.37 6.27 56.52 0.35 -6.02 16 14 C -0.25 -5.84 5.80 -103.87 -0.60 -6.44 16 15 C 0.18 3.88 6.63 -82.47 -0.55 3.33 16 16 N -0.59 -14.21 10.26 -9.93 -0.10 -14.31 16 17 C -0.06 -1.01 5.97 -28.10 -0.17 -1.18 16 18 C -0.11 -1.67 5.93 -26.91 -0.16 -1.83 16 19 C -0.12 -1.82 5.97 -26.89 -0.16 -1.98 16 20 C -0.05 -0.88 5.05 -28.15 -0.14 -1.02 16 21 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 22 H 0.09 1.79 7.55 -51.91 -0.39 1.40 16 23 H 0.08 1.56 4.53 -51.92 -0.24 1.33 16 24 H 0.29 6.74 8.29 -40.82 -0.34 6.40 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.34 6.72 -51.93 -0.35 0.99 16 LS Contribution 263.58 15.07 3.97 3.97 Total: -1.00 -28.34 263.58 -8.33 -36.67 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.98 Total: -0.75 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.61 Total: -5.83 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.62 Total: -48.84 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -3.87 Total: 18.49 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.46 Total: -3.71 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.34 -8.33 -36.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.378 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds