Wall clock time and date at job start Mon Mar 30 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76204 * 100.00013 * 2 1 4 4 N 1.32178 * 119.11749 * 356.30067 * 3 2 1 5 5 C 1.33852 * 120.29881 * 180.02562 * 4 3 2 6 6 C 1.41533 * 120.52641 * 180.16287 * 5 4 3 7 7 H 1.08000 * 119.99667 * 158.55468 * 6 5 4 8 8 C 1.40096 * 119.99985 * 338.54927 * 6 5 4 9 9 N 1.30675 * 120.00070 * 169.97618 * 8 6 5 10 10 Si 1.86803 * 120.00206 * 349.97623 * 8 6 5 11 11 H 1.48504 * 109.46897 * 95.36302 * 10 8 6 12 12 H 1.48499 * 109.47239 * 215.36481 * 10 8 6 13 13 H 1.48502 * 109.47137 * 335.36818 * 10 8 6 14 14 C 1.41335 * 118.94487 * 0.15894 * 5 4 3 15 15 C 1.37558 * 118.43451 * 359.60434 * 14 5 4 16 16 N 1.32588 * 119.11329 * 176.27193 * 3 2 1 17 17 C 1.50487 * 122.53325 * 180.42030 * 15 14 5 18 18 C 1.52787 * 110.31444 * 342.30572 * 17 15 14 19 19 C 1.52868 * 108.74937 * 51.11997 * 18 17 15 20 20 C 1.50329 * 118.69642 * 179.32001 * 14 5 4 21 21 H 1.08998 * 109.47026 * 186.87089 * 1 2 3 22 22 H 1.09003 * 109.46741 * 306.86600 * 1 2 3 23 23 H 1.09002 * 109.47599 * 66.86705 * 1 2 3 24 24 H 0.97004 * 120.00422 * 179.97438 * 9 8 6 25 25 H 1.09006 * 109.30071 * 102.51468 * 17 15 14 26 26 H 1.09006 * 109.30347 * 222.09746 * 17 15 14 27 27 H 1.08995 * 109.63352 * 170.67352 * 18 17 15 28 28 H 1.08998 * 109.63069 * 291.26102 * 18 17 15 29 29 H 1.08997 * 109.70809 * 170.51623 * 19 18 17 30 30 H 1.09001 * 109.83000 * 49.94783 * 19 18 17 31 31 H 1.09004 * 109.30320 * 283.00072 * 20 14 5 32 32 H 1.09001 * 109.31019 * 42.38964 * 20 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0928 2.5688 -0.0745 5 6 1.2981 3.8915 -0.0768 6 6 0.2059 4.7884 -0.1529 7 1 0.3197 5.8077 0.1852 8 6 -1.0228 4.3539 -0.6671 9 7 -2.0813 5.1125 -0.5591 10 14 -1.1480 2.6900 -1.5069 11 1 -1.6104 1.6745 -0.5270 12 1 -2.1179 2.7733 -2.6284 13 1 0.1847 2.2994 -2.0329 14 6 2.6229 4.3782 -0.0019 15 6 3.6514 3.4683 0.0790 16 7 3.3663 2.1698 0.0753 17 6 5.0946 3.8844 0.1719 18 6 5.2573 5.3375 -0.2712 19 6 4.2493 6.1989 0.4895 20 6 2.8480 5.8644 -0.0205 21 1 -0.3633 -1.0203 0.1229 22 1 -0.3633 0.6166 0.8222 23 1 -0.3634 0.4037 -0.9450 24 1 -2.9319 4.8119 -0.9154 25 1 5.4334 3.7819 1.2029 26 1 5.6969 3.2421 -0.4707 27 1 6.2676 5.6783 -0.0453 28 1 5.0720 5.4166 -1.3424 29 1 4.4610 7.2537 0.3142 30 1 4.3114 5.9854 1.5566 31 1 2.7384 6.2327 -1.0405 32 1 2.1076 6.3491 0.6159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:30 Heat of formation + Delta-G solvation = -4.798546 kcal Electronic energy + Delta-G solvation = -16418.190399 eV Core-core repulsion = 13888.766174 eV Total energy + Delta-G solvation = -2529.424224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.50308 -37.72924 -36.18916 -34.29232 -32.26496 -30.86764 -29.98551 -28.48014 -25.22753 -24.50598 -22.88233 -21.02317 -19.76810 -18.51230 -17.82621 -17.15143 -16.28618 -15.86372 -15.65006 -15.36984 -14.85957 -14.69659 -14.23763 -14.20088 -14.05566 -13.46900 -13.27008 -13.15644 -12.86605 -12.70453 -12.55914 -11.99403 -11.79438 -11.65350 -11.45011 -11.23693 -10.86190 -10.63212 -10.27369 -9.60009 -9.03199 -8.62796 -6.95069 0.32672 0.46578 0.59700 1.19657 1.35907 1.42100 1.52368 2.25147 2.47590 3.34996 3.58651 3.96358 4.05027 4.09167 4.15593 4.24730 4.32365 4.41371 4.60565 4.71466 4.80601 4.82603 4.87733 4.99701 5.04342 5.08002 5.23094 5.25677 5.49975 5.55714 5.74306 5.90866 6.32637 6.37026 6.75827 7.52874 7.93899 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.011879 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.065997 B = 2356.543778 C = 3690.803132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.035 6.035 3 C 0.293 3.707 4 N -0.608 5.608 5 C 0.250 3.750 6 C -0.426 4.426 7 H 0.090 0.910 8 C 0.060 3.940 9 N -0.815 5.815 10 Si 1.007 2.993 11 H -0.238 1.238 12 H -0.311 1.311 13 H -0.283 1.283 14 C -0.270 4.270 15 C 0.166 3.834 16 N -0.602 5.602 17 C -0.057 4.057 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.044 4.044 21 H 0.141 0.859 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.300 0.700 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -2.752 0.170 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.196 5.804 3 C -0.085 4.085 4 N -0.338 5.338 5 C 0.119 3.881 6 C -0.460 4.460 7 H 0.108 0.892 8 C -0.161 4.161 9 N -0.440 5.440 10 Si 0.838 3.162 11 H -0.163 1.163 12 H -0.241 1.241 13 H -0.211 1.211 14 C -0.279 4.279 15 C 0.028 3.972 16 N -0.327 5.327 17 C -0.095 4.095 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.083 4.083 21 H 0.159 0.841 22 H 0.097 0.903 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.470 -4.537 0.201 8.742 hybrid contribution -1.398 1.565 -0.324 2.124 sum 6.071 -2.972 -0.123 6.760 Atomic orbital electron populations 1.23958 0.93438 1.07763 1.05589 1.84832 1.07763 0.95421 1.92357 1.24601 0.88298 0.99997 0.95612 1.68254 1.33032 1.04405 1.28064 1.19054 0.93173 0.88358 0.87538 1.19524 0.93090 0.98227 1.35187 0.89171 1.26834 0.93823 1.02053 0.93408 1.69577 1.01465 1.39027 1.33907 0.84878 0.75983 0.78000 0.77357 1.16279 1.24143 1.21070 1.21050 0.93261 0.98436 1.15157 1.21429 0.97137 0.87629 0.90962 1.68313 1.20090 1.17398 1.26904 1.20346 0.88350 0.97828 1.02997 1.21451 1.00520 0.92525 0.99987 1.21492 0.93041 1.00614 0.99750 1.19966 0.98032 0.89740 1.00535 0.84137 0.90292 0.91220 0.88884 0.89320 0.89890 0.87987 0.92265 0.89272 0.92080 0.92382 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.25 113.37 0.94 -3.80 16 2 S -0.03 -1.35 22.89 -56.49 -1.29 -2.65 16 3 C 0.29 14.16 7.85 180.53 1.42 15.58 16 4 N -0.61 -31.17 4.31 -189.84 -0.82 -31.99 16 5 C 0.25 13.09 6.08 40.41 0.25 13.34 16 6 C -0.43 -22.97 9.14 23.53 0.22 -22.76 16 7 H 0.09 4.97 6.52 -2.91 -0.02 4.95 16 8 C 0.06 3.15 5.52 85.32 0.47 3.62 16 9 N -0.81 -42.39 13.92 21.85 0.30 -42.09 16 10 Si 1.01 46.40 22.77 68.60 1.56 47.96 16 11 H -0.24 -10.01 5.22 99.48 0.52 -9.49 16 12 H -0.31 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.28 -14.31 6.27 99.48 0.62 -13.69 16 14 C -0.27 -12.48 5.80 -19.38 -0.11 -12.59 16 15 C 0.17 7.21 6.63 42.16 0.28 7.49 16 16 N -0.60 -28.47 10.26 -185.33 -1.90 -30.37 16 17 C -0.06 -1.81 5.97 29.71 0.18 -1.63 16 18 C -0.11 -2.74 5.93 30.48 0.18 -2.56 16 19 C -0.11 -3.12 5.97 30.49 0.18 -2.94 16 20 C -0.04 -1.69 5.05 29.67 0.15 -1.54 16 21 H 0.14 3.45 8.14 -2.40 -0.02 3.43 16 22 H 0.08 2.95 7.55 -2.39 -0.02 2.93 16 23 H 0.07 2.56 4.53 -2.39 -0.01 2.55 16 24 H 0.30 14.07 8.29 -92.71 -0.77 13.30 16 25 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 26 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.70 8.11 -2.39 -0.02 1.69 16 31 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.05 2.17 6.72 -2.39 -0.02 2.15 16 Total: -1.00 -62.33 263.58 2.86 -59.48 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.86 Total: 7.46 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.14 Total: -7.80 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -2.42 Total: -104.44 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.56 Total: 47.96 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -1.29 Total: -2.65 kcal Total: -62.33 2.86 -59.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.677 kcal (2) G-P(sol) polarization free energy of solvation -62.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds