Wall clock time and date at job start Mon Mar 30 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35999 * 117.00564 * 2 1 4 4 C 1.38972 * 120.02440 * 269.97612 * 3 2 1 5 5 C 1.39076 * 119.80718 * 180.02562 * 4 3 2 6 6 C 1.38687 * 119.85966 * 0.04251 * 5 4 3 7 7 C 1.38198 * 120.12546 * 359.64130 * 6 5 4 8 8 C 1.38243 * 120.17997 * 0.63414 * 7 6 5 9 9 C 1.50702 * 119.95739 * 179.67811 * 8 7 6 10 10 H 1.09007 * 109.47333 * 179.73200 * 9 8 7 11 11 C 1.52994 * 109.47329 * 59.72962 * 9 8 7 12 12 C 1.50708 * 109.47287 * 299.72597 * 9 8 7 13 13 H 1.07995 * 119.99485 * 5.61914 * 12 9 8 14 14 C 1.37873 * 120.00001 * 185.61087 * 12 9 8 15 15 N 1.31517 * 120.00229 * 197.60909 * 14 12 9 16 16 Si 1.86800 * 119.99991 * 17.61037 * 14 12 9 17 17 H 1.48507 * 109.47159 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47428 * 300.00062 * 16 14 12 19 19 H 1.48506 * 109.47271 * 59.99884 * 16 14 12 20 20 O 1.36517 * 108.66163 * 180.02562 * 5 4 3 21 21 C 1.43989 * 105.49916 * 17.29606 * 20 5 4 22 22 O 1.36601 * 131.52517 * 0.05552 * 4 3 2 23 23 H 1.09004 * 109.46894 * 300.00210 * 1 2 3 24 24 H 1.09000 * 109.46703 * 59.99478 * 1 2 3 25 25 H 1.08995 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.93213 * 179.97438 * 6 5 4 27 27 H 1.08001 * 119.90626 * 180.31401 * 7 6 5 28 28 H 1.09000 * 109.46885 * 306.17070 * 11 9 8 29 29 H 1.08996 * 109.47254 * 66.16626 * 11 9 8 30 30 H 1.09002 * 109.47489 * 186.17289 * 11 9 8 31 31 H 0.97001 * 119.99171 * 354.79227 * 15 14 12 32 32 H 1.08993 * 110.57885 * 91.45012 * 21 20 5 33 33 H 1.09004 * 110.57241 * 214.18830 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3627 1.8310 -1.2032 5 6 2.9947 3.0699 -1.1980 6 6 3.3070 3.6806 0.0074 7 6 2.9847 3.0639 1.2014 8 6 2.3616 1.8298 1.2002 9 6 2.0190 1.1586 2.5053 10 1 1.5321 0.2038 2.3060 11 6 1.0740 2.0553 3.3074 12 6 3.2804 0.9236 3.2957 13 1 4.2227 1.3099 2.9363 14 6 3.2314 0.2157 4.4778 15 7 4.2256 0.2974 5.3350 16 14 1.7530 -0.8595 4.8620 17 1 1.9438 -1.5098 6.1834 18 1 0.5270 -0.0223 4.8942 19 1 1.6131 -1.9019 3.8135 20 8 3.1952 3.4635 -2.4897 21 6 2.3145 2.6453 -3.2823 22 8 2.1660 1.4460 -2.4990 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.7982 4.6424 0.0129 27 1 3.2250 3.5450 2.1380 28 1 1.5156 3.0463 3.4126 29 1 0.1201 2.1361 2.7863 30 1 0.9132 1.6226 4.2948 31 1 5.0257 0.7944 5.1036 32 1 1.3513 3.1376 -3.4162 33 1 2.7664 2.4208 -4.2485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:38 Heat of formation + Delta-G solvation = -74.400270 kcal Electronic energy + Delta-G solvation = -18717.753345 eV Core-core repulsion = 15710.265342 eV Total energy + Delta-G solvation = -3007.488004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.90994 -39.03317 -36.75809 -35.81526 -34.13525 -31.52806 -29.62717 -28.52851 -26.47110 -25.57749 -24.73968 -23.01851 -22.14460 -20.02331 -18.10670 -17.83160 -17.30890 -16.77940 -16.21316 -15.40060 -15.16431 -14.89483 -14.16600 -13.94145 -13.64191 -13.04681 -12.82862 -12.72929 -12.49847 -12.31475 -11.99665 -11.93632 -11.41460 -11.07753 -10.70054 -10.47038 -10.26582 -9.85098 -9.76383 -9.58398 -8.94737 -8.26394 -8.11643 -7.64089 -6.44837 -4.07386 1.45656 1.57151 2.97504 3.37022 3.46042 3.61218 3.62287 3.76600 4.16101 4.48609 4.72547 4.92382 5.00224 5.25219 5.40964 5.48371 5.53206 5.57494 5.64052 5.78179 5.80796 6.10008 6.33034 6.33998 6.44963 6.65369 6.71101 6.82808 6.90841 7.14309 7.26158 7.48277 7.88522 8.05588 8.37569 8.89067 9.59667 10.93603 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.007476 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.567815 B = 3744.329091 C = 4248.454791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.101 3.899 4 C 0.008 3.992 5 C 0.012 3.988 6 C -0.103 4.103 7 C -0.091 4.091 8 C -0.028 4.028 9 C 0.049 3.951 10 H 0.040 0.960 11 C -0.146 4.146 12 C -0.591 4.591 13 H 0.060 0.940 14 C 0.033 3.967 15 N -0.904 5.904 16 Si 1.042 2.958 17 H -0.286 1.286 18 H -0.274 1.274 19 H -0.281 1.281 20 O -0.313 6.313 21 C 0.212 3.788 22 O -0.306 6.306 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.145 0.855 28 H 0.047 0.953 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.268 0.732 32 H 0.076 0.924 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 5.154 -12.657 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C 0.057 3.943 4 C -0.037 4.037 5 C -0.032 4.032 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.029 4.029 9 C 0.030 3.970 10 H 0.058 0.942 11 C -0.204 4.204 12 C -0.628 4.628 13 H 0.078 0.922 14 C -0.172 4.172 15 N -0.538 5.538 16 Si 0.871 3.129 17 H -0.212 1.212 18 H -0.200 1.200 19 H -0.207 1.207 20 O -0.230 6.230 21 C 0.100 3.900 22 O -0.222 6.222 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.149 0.851 27 H 0.163 0.837 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.314 3.952 -11.680 14.871 hybrid contribution 0.633 1.157 -1.623 2.091 sum -7.681 5.109 -13.303 16.188 Atomic orbital electron populations 1.22983 0.79715 1.02958 1.00311 1.86106 1.19362 1.24311 1.93926 1.17552 1.00912 0.87889 0.87955 1.20121 1.04273 0.94262 0.84999 1.19502 1.03781 0.94384 0.85512 1.20120 1.03196 1.00748 0.88100 1.20815 0.98105 0.94945 0.97036 1.20445 0.94750 0.93050 0.94673 1.18147 0.97192 0.94028 0.87682 0.94191 1.22288 0.96885 1.00589 1.00606 1.21907 0.93067 1.39243 1.08599 0.92220 1.25732 1.03100 0.96345 0.92013 1.70871 1.07423 1.42025 1.33503 0.84085 0.75519 0.76941 0.76384 1.21187 1.20034 1.20678 1.87300 1.61225 1.59801 1.14689 1.25492 0.93745 0.77483 0.93321 1.87392 1.88796 1.31612 1.14439 0.93186 0.94234 0.89019 0.85127 0.83747 0.93378 0.95949 0.92198 0.92201 0.90629 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.88 101.05 1.10 1.64 16 2 O -0.32 -6.54 9.26 -19.74 -0.18 -6.72 16 3 C 0.10 2.09 5.71 -39.16 -0.22 1.87 16 4 C 0.01 0.15 7.09 -39.00 -0.28 -0.13 16 5 C 0.01 0.21 7.15 -39.10 -0.28 -0.07 16 6 C -0.10 -1.75 10.06 -39.43 -0.40 -2.14 16 7 C -0.09 -1.72 8.58 -39.59 -0.34 -2.06 16 8 C -0.03 -0.60 4.76 -104.47 -0.50 -1.10 16 9 C 0.05 1.13 2.02 -92.92 -0.19 0.94 16 10 H 0.04 0.96 5.38 -51.92 -0.28 0.68 16 11 C -0.15 -3.05 8.77 37.15 0.33 -2.72 16 12 C -0.59 -16.19 8.54 -34.44 -0.29 -16.49 16 13 H 0.06 1.76 7.78 -52.49 -0.41 1.36 16 14 C 0.03 0.94 5.29 -17.82 -0.09 0.84 16 15 N -0.90 -27.29 13.70 55.43 0.76 -26.53 16 16 Si 1.04 24.81 26.29 -169.99 -4.47 20.34 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -5.90 5.76 56.52 0.33 -5.57 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 O -0.31 -4.95 11.40 -45.75 -0.52 -5.47 16 21 C 0.21 2.66 8.89 101.05 0.90 3.56 16 22 O -0.31 -5.23 11.41 -46.31 -0.53 -5.76 16 23 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.14 2.67 7.52 -52.49 -0.39 2.27 16 28 H 0.05 0.95 7.17 -51.93 -0.37 0.58 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 1.30 4.89 -51.93 -0.25 1.05 16 31 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -31.77 278.09 -4.91 -36.68 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.89 Total: -0.88 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.27 Total: -15.86 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.76 Total: -26.53 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.23 Total: -17.95 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.47 Total: 20.34 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.77 -4.91 -36.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.717 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds