Wall clock time and date at job start Mon Mar 30 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35999 * 117.00564 * 2 1 4 4 C 1.38972 * 120.02440 * 269.97612 * 3 2 1 5 5 C 1.39076 * 119.80718 * 180.02562 * 4 3 2 6 6 C 1.38687 * 119.85966 * 0.04251 * 5 4 3 7 7 C 1.38198 * 120.12546 * 359.64130 * 6 5 4 8 8 C 1.38243 * 120.17997 * 0.63414 * 7 6 5 9 9 C 1.50702 * 119.95739 * 179.67811 * 8 7 6 10 10 H 1.09007 * 109.47333 * 179.73200 * 9 8 7 11 11 C 1.52994 * 109.47329 * 59.72962 * 9 8 7 12 12 C 1.50708 * 109.47287 * 299.72597 * 9 8 7 13 13 H 1.07995 * 119.99485 * 5.61914 * 12 9 8 14 14 C 1.37873 * 120.00001 * 185.61087 * 12 9 8 15 15 N 1.31517 * 120.00229 * 197.60909 * 14 12 9 16 16 Si 1.86800 * 119.99991 * 17.61037 * 14 12 9 17 17 H 1.48507 * 109.47159 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47428 * 300.00062 * 16 14 12 19 19 H 1.48506 * 109.47271 * 59.99884 * 16 14 12 20 20 O 1.36517 * 108.66163 * 180.02562 * 5 4 3 21 21 C 1.43989 * 105.49916 * 17.29606 * 20 5 4 22 22 O 1.36601 * 131.52517 * 0.05552 * 4 3 2 23 23 H 1.09004 * 109.46894 * 300.00210 * 1 2 3 24 24 H 1.09000 * 109.46703 * 59.99478 * 1 2 3 25 25 H 1.08995 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.93213 * 179.97438 * 6 5 4 27 27 H 1.08001 * 119.90626 * 180.31401 * 7 6 5 28 28 H 1.09000 * 109.46885 * 306.17070 * 11 9 8 29 29 H 1.08996 * 109.47254 * 66.16626 * 11 9 8 30 30 H 1.09002 * 109.47489 * 186.17289 * 11 9 8 31 31 H 0.97001 * 119.99171 * 354.79227 * 15 14 12 32 32 H 1.08993 * 110.57885 * 91.45012 * 21 20 5 33 33 H 1.09004 * 110.57241 * 214.18830 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3627 1.8310 -1.2032 5 6 2.9947 3.0699 -1.1980 6 6 3.3070 3.6806 0.0074 7 6 2.9847 3.0639 1.2014 8 6 2.3616 1.8298 1.2002 9 6 2.0190 1.1586 2.5053 10 1 1.5321 0.2038 2.3060 11 6 1.0740 2.0553 3.3074 12 6 3.2804 0.9236 3.2957 13 1 4.2227 1.3099 2.9363 14 6 3.2314 0.2157 4.4778 15 7 4.2256 0.2974 5.3350 16 14 1.7530 -0.8595 4.8620 17 1 1.9438 -1.5098 6.1834 18 1 0.5270 -0.0223 4.8942 19 1 1.6131 -1.9019 3.8135 20 8 3.1952 3.4635 -2.4897 21 6 2.3145 2.6453 -3.2823 22 8 2.1660 1.4460 -2.4990 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.7982 4.6424 0.0129 27 1 3.2250 3.5450 2.1380 28 1 1.5156 3.0463 3.4126 29 1 0.1201 2.1361 2.7863 30 1 0.9132 1.6226 4.2948 31 1 5.0257 0.7944 5.1036 32 1 1.3513 3.1376 -3.4162 33 1 2.7664 2.4208 -4.2485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:38 Heat of formation + Delta-G solvation = -96.029983 kcal Electronic energy + Delta-G solvation = -18718.691280 eV Core-core repulsion = 15710.265342 eV Total energy + Delta-G solvation = -3008.425938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.18286 -40.46130 -38.18733 -37.09393 -35.94287 -33.49179 -31.00255 -29.96607 -27.73851 -26.80426 -26.59348 -24.56629 -23.56003 -21.70069 -19.76646 -19.38374 -18.57688 -18.33122 -17.59999 -16.69443 -16.55354 -16.18883 -15.80062 -15.32015 -15.19737 -14.64214 -14.50990 -14.10209 -13.97999 -13.78216 -13.53403 -13.26545 -13.06409 -12.55436 -12.30384 -12.26746 -11.65108 -11.61589 -11.50160 -11.08187 -10.92226 -10.35424 -9.58590 -9.09103 -8.63309 -6.30679 0.04650 0.12636 1.47409 1.57220 1.73577 1.75005 2.36999 2.49014 2.51487 2.74874 3.12055 3.64697 3.81734 3.93117 4.09934 4.16757 4.21579 4.38714 4.43834 4.45630 4.61509 4.66987 4.77663 4.85652 4.94401 5.00369 5.19629 5.25034 5.40981 5.50838 5.76580 5.94275 6.05057 6.10314 6.50971 6.62407 7.44658 8.69191 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.007476 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.567815 B = 3744.329091 C = 4248.454791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.090 3.910 4 C -0.002 4.002 5 C 0.019 3.981 6 C -0.097 4.097 7 C -0.095 4.095 8 C -0.059 4.059 9 C 0.051 3.949 10 H 0.035 0.965 11 C -0.141 4.141 12 C -0.588 4.588 13 H 0.022 0.978 14 C -0.018 4.018 15 N -0.939 5.939 16 Si 1.076 2.924 17 H -0.291 1.291 18 H -0.234 1.234 19 H -0.271 1.271 20 O -0.318 6.318 21 C 0.202 3.798 22 O -0.321 6.321 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.115 0.885 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 5.838 -14.614 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.046 3.954 4 C -0.046 4.046 5 C -0.026 4.026 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.060 4.060 9 C 0.032 3.968 10 H 0.053 0.947 11 C -0.199 4.199 12 C -0.626 4.626 13 H 0.040 0.960 14 C -0.215 4.215 15 N -0.575 5.575 16 Si 0.898 3.102 17 H -0.217 1.217 18 H -0.158 1.158 19 H -0.197 1.197 20 O -0.234 6.234 21 C 0.092 3.908 22 O -0.238 6.238 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.133 0.867 26 H 0.180 0.820 27 H 0.160 0.840 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.301 4.665 -13.676 17.746 hybrid contribution 1.295 0.997 -1.232 2.046 sum -9.006 5.661 -14.908 18.314 Atomic orbital electron populations 1.23251 0.77350 1.04827 1.01135 1.86035 1.21855 1.24587 1.94116 1.17626 1.01427 0.87957 0.88438 1.20145 1.04399 0.94616 0.85484 1.19657 1.02537 0.93862 0.86513 1.20330 1.02415 1.01661 0.87158 1.20835 0.98086 0.94490 0.97915 1.20327 0.97228 0.94311 0.94141 1.17995 0.95378 0.94733 0.88699 0.94668 1.22162 0.97827 1.00011 0.99863 1.22102 0.93627 1.37929 1.08927 0.96000 1.27084 1.04988 0.97210 0.92257 1.71000 1.07923 1.43772 1.34813 0.83692 0.74258 0.76159 0.76096 1.21741 1.15829 1.19651 1.87293 1.62043 1.60296 1.13810 1.26161 0.95315 0.75981 0.93385 1.87364 1.88814 1.33831 1.13770 0.92992 0.92733 0.86712 0.82007 0.84042 0.93000 0.92781 0.93177 0.93908 0.87563 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.88 113.37 1.23 2.04 16 2 O -0.35 -13.90 9.26 -93.54 -0.87 -14.77 16 3 C 0.09 3.64 5.71 22.54 0.13 3.77 16 4 C 0.00 -0.06 7.09 22.65 0.16 0.10 16 5 C 0.02 0.62 7.15 22.58 0.16 0.78 16 6 C -0.10 -3.13 10.06 22.37 0.22 -2.90 16 7 C -0.10 -3.57 8.58 22.26 0.19 -3.38 16 8 C -0.06 -2.50 4.76 -19.77 -0.09 -2.60 16 9 C 0.05 2.35 2.02 -12.29 -0.02 2.33 16 10 H 0.04 1.66 5.38 -2.38 -0.01 1.65 16 11 C -0.14 -5.66 8.77 71.98 0.63 -5.03 16 12 C -0.59 -33.10 8.54 25.60 0.22 -32.88 16 13 H 0.02 1.35 7.78 -2.91 -0.02 1.33 16 14 C -0.02 -1.01 5.29 84.65 0.45 -0.56 16 15 N -0.94 -58.64 13.70 21.45 0.29 -58.34 16 16 Si 1.08 49.58 26.29 68.60 1.80 51.38 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 18 H -0.23 -9.26 5.76 99.48 0.57 -8.69 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 O -0.32 -9.03 11.40 -76.25 -0.87 -9.90 16 21 C 0.20 4.33 8.89 113.37 1.01 5.34 16 22 O -0.32 -10.20 11.41 -76.97 -0.88 -11.08 16 23 H 0.05 1.45 8.10 -2.38 -0.02 1.43 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.11 2.67 8.14 -2.39 -0.02 2.66 16 26 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.14 5.27 7.52 -2.91 -0.02 5.24 16 28 H 0.05 2.00 7.17 -2.39 -0.02 1.98 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 2.07 4.89 -2.39 -0.01 2.06 16 31 H 0.25 15.96 8.73 -92.71 -0.81 15.16 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.73 278.09 4.72 -66.01 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.95 Total: 9.69 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 4.29 Total: -32.99 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.29 Total: -58.34 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -2.61 Total: -35.74 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.80 Total: 51.38 kcal Total: -70.73 4.72 -66.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.022 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds