Wall clock time and date at job start Mon Mar 30 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 117.00029 * 2 1 4 4 C 1.38979 * 120.02758 * 269.97707 * 3 2 1 5 5 C 1.39068 * 119.81077 * 180.02562 * 4 3 2 6 6 C 1.38683 * 119.86351 * 359.96209 * 5 4 3 7 7 C 1.38205 * 120.12327 * 0.02562 * 6 5 4 8 8 C 1.38246 * 120.18496 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.96438 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46966 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47015 * 300.00628 * 9 8 7 12 12 C 1.50705 * 109.46794 * 60.00176 * 9 8 7 13 13 H 1.08004 * 119.99840 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99588 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00552 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99571 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47137 * 60.00153 * 16 14 12 18 18 H 1.48499 * 109.47337 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47444 * 300.00447 * 16 14 12 20 20 O 1.36517 * 108.66448 * 179.97438 * 5 4 3 21 21 C 1.43990 * 105.49952 * 17.28324 * 20 5 4 22 22 O 1.36598 * 131.52118 * 0.05035 * 4 3 2 23 23 H 1.09004 * 109.47187 * 60.00102 * 1 2 3 24 24 H 1.08993 * 109.47664 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47287 * 300.00843 * 1 2 3 26 26 H 1.07994 * 119.94095 * 180.29000 * 6 5 4 27 27 H 1.08006 * 119.90472 * 179.97438 * 7 6 5 28 28 H 1.09003 * 109.47096 * 299.99537 * 11 9 8 29 29 H 1.08998 * 109.47915 * 59.99770 * 11 9 8 30 30 H 1.09007 * 109.46913 * 179.97438 * 11 9 8 31 31 H 0.96995 * 120.00008 * 180.02562 * 15 14 12 32 32 H 1.09002 * 110.57475 * 91.44891 * 21 20 5 33 33 H 1.08998 * 110.58214 * 214.18923 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3626 1.8312 -1.2033 5 6 2.9944 3.0701 -1.1980 6 6 3.3052 3.6816 0.0073 7 6 2.9886 3.0620 1.2014 8 6 2.3615 1.8299 1.2003 9 6 2.0191 1.1585 2.5053 10 1 1.5335 0.2033 2.3059 11 6 3.2997 0.9214 3.3081 12 6 1.0873 2.0412 3.2950 13 1 0.7741 2.9930 2.8920 14 6 0.6340 1.6332 4.5315 15 7 1.0150 0.4740 5.0220 16 14 -0.5216 2.7271 5.5101 17 1 -1.7643 2.9572 4.7303 18 1 -0.8590 2.0656 6.7961 19 1 0.1402 4.0284 5.7820 20 8 3.1959 3.4632 -2.4897 21 6 2.3161 2.6445 -3.2828 22 8 2.1660 1.4462 -2.4990 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 3.7916 4.6458 0.0128 27 1 3.2327 3.5412 2.1380 28 1 3.9737 0.2829 2.7369 29 1 3.7858 1.8764 3.5075 30 1 3.0520 0.4361 4.2523 31 1 0.6957 0.1869 5.8917 32 1 1.3528 3.1365 -3.4177 33 1 2.7688 2.4196 -4.2485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:40 Heat of formation + Delta-G solvation = -75.919956 kcal Electronic energy + Delta-G solvation = -18671.245716 eV Core-core repulsion = 15663.691814 eV Total energy + Delta-G solvation = -3007.553902 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80992 -38.84617 -36.60426 -35.70763 -34.05089 -31.17763 -29.48420 -28.10334 -26.26563 -25.44324 -25.12718 -23.00185 -21.97795 -20.16536 -17.94724 -17.47205 -17.16075 -16.15389 -15.94354 -15.27231 -14.93740 -14.75063 -14.51669 -13.85247 -13.59552 -12.95257 -12.65958 -12.54705 -12.31964 -11.89647 -11.74995 -11.49931 -11.03130 -10.99713 -10.89395 -10.53415 -10.13224 -10.06861 -9.75939 -9.34847 -9.00514 -8.40808 -8.02552 -7.48883 -6.05273 -4.13464 1.57301 1.68828 3.06900 3.27386 3.32993 3.35196 3.70993 3.88897 4.33972 4.41275 4.81771 5.00127 5.11566 5.25340 5.51920 5.60218 5.73592 5.79775 5.87244 5.94815 6.14399 6.29904 6.47566 6.73716 6.80217 6.88691 7.01080 7.17454 7.23424 7.38785 7.66919 7.92108 8.03583 8.08449 8.32314 8.89040 9.51326 11.00022 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.006944 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.707803 B = 4031.039653 C = 4289.036350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.103 3.897 4 C 0.006 3.994 5 C 0.009 3.991 6 C -0.105 4.105 7 C -0.093 4.093 8 C -0.034 4.034 9 C 0.075 3.925 10 H 0.048 0.952 11 C -0.131 4.131 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.315 6.315 21 C 0.212 3.788 22 O -0.307 6.307 23 H 0.034 0.966 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.129 0.871 27 H 0.144 0.856 28 H 0.011 0.989 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 3.676 -10.880 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.241 6.241 3 C 0.058 3.942 4 C -0.039 4.039 5 C -0.035 4.035 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.035 4.035 9 C 0.057 3.943 10 H 0.066 0.934 11 C -0.189 4.189 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.232 6.232 21 C 0.100 3.900 22 O -0.224 6.224 23 H 0.053 0.947 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.162 0.838 28 H 0.030 0.970 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.225 3.320 -10.917 11.477 hybrid contribution -0.892 0.808 0.184 1.218 sum 0.333 4.128 -10.734 11.505 Atomic orbital electron populations 1.22975 0.79144 1.02740 1.00858 1.86019 1.19896 1.24254 1.93975 1.17616 1.00654 0.88016 0.87877 1.20179 1.04393 0.94330 0.84973 1.19494 1.04087 0.94446 0.85450 1.20115 1.03567 1.00543 0.88166 1.20842 0.98543 0.94806 0.96908 1.20850 0.93621 0.93476 0.95540 1.17851 0.94475 0.96276 0.85727 0.93362 1.21786 0.95847 0.98916 1.02336 1.21062 1.27677 1.04224 1.02194 0.92465 1.24932 0.96243 0.95078 0.97425 1.69876 1.44184 1.19772 1.18560 0.86662 0.81316 0.80736 0.79322 1.20324 1.21241 1.20179 1.87285 1.61263 1.59862 1.14763 1.25467 0.93761 0.77571 0.93234 1.87373 1.88835 1.31611 1.14546 0.94723 0.89394 0.91849 0.85310 0.83790 0.97007 0.95193 0.89414 0.92776 0.90706 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.88 101.05 1.10 1.76 16 2 O -0.33 -6.91 9.26 -19.74 -0.18 -7.09 16 3 C 0.10 2.18 5.71 -39.16 -0.22 1.96 16 4 C 0.01 0.11 7.09 -39.00 -0.28 -0.17 16 5 C 0.01 0.16 7.15 -39.11 -0.28 -0.12 16 6 C -0.11 -1.80 10.06 -39.43 -0.40 -2.20 16 7 C -0.09 -1.77 8.70 -39.59 -0.34 -2.12 16 8 C -0.03 -0.74 4.75 -104.47 -0.50 -1.24 16 9 C 0.08 1.83 2.44 -92.92 -0.23 1.61 16 10 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 11 C -0.13 -3.11 8.78 37.16 0.33 -2.78 16 12 C -0.51 -13.33 8.24 -34.44 -0.28 -13.61 16 13 H 0.06 1.47 7.60 -52.48 -0.40 1.07 16 14 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 16 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 O -0.31 -5.08 11.40 -45.75 -0.52 -5.60 16 21 C 0.21 2.79 8.89 101.05 0.90 3.68 16 22 O -0.31 -5.41 11.41 -46.30 -0.53 -5.94 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 26 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.14 2.63 7.57 -52.48 -0.40 2.23 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.03 0.65 7.38 -51.93 -0.38 0.27 16 30 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 282.76 15.07 4.26 4.26 Total: -1.00 -29.37 282.76 -5.60 -34.97 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.94 Total: -0.73 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.30 Total: -11.60 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.23 Total: -18.62 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.37 -5.60 -34.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.952 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds