Wall clock time and date at job start Mon Mar 30 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 117.00029 * 2 1 4 4 C 1.38979 * 120.02758 * 269.97707 * 3 2 1 5 5 C 1.39068 * 119.81077 * 180.02562 * 4 3 2 6 6 C 1.38683 * 119.86351 * 359.96209 * 5 4 3 7 7 C 1.38205 * 120.12327 * 0.02562 * 6 5 4 8 8 C 1.38246 * 120.18496 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.96438 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46966 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47015 * 300.00628 * 9 8 7 12 12 C 1.50705 * 109.46794 * 60.00176 * 9 8 7 13 13 H 1.08004 * 119.99840 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99588 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00552 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99571 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47137 * 60.00153 * 16 14 12 18 18 H 1.48499 * 109.47337 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47444 * 300.00447 * 16 14 12 20 20 O 1.36517 * 108.66448 * 179.97438 * 5 4 3 21 21 C 1.43990 * 105.49952 * 17.28324 * 20 5 4 22 22 O 1.36598 * 131.52118 * 0.05035 * 4 3 2 23 23 H 1.09004 * 109.47187 * 60.00102 * 1 2 3 24 24 H 1.08993 * 109.47664 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47287 * 300.00843 * 1 2 3 26 26 H 1.07994 * 119.94095 * 180.29000 * 6 5 4 27 27 H 1.08006 * 119.90472 * 179.97438 * 7 6 5 28 28 H 1.09003 * 109.47096 * 299.99537 * 11 9 8 29 29 H 1.08998 * 109.47915 * 59.99770 * 11 9 8 30 30 H 1.09007 * 109.46913 * 179.97438 * 11 9 8 31 31 H 0.96995 * 120.00008 * 180.02562 * 15 14 12 32 32 H 1.09002 * 110.57475 * 91.44891 * 21 20 5 33 33 H 1.08998 * 110.58214 * 214.18923 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3626 1.8312 -1.2033 5 6 2.9944 3.0701 -1.1980 6 6 3.3052 3.6816 0.0073 7 6 2.9886 3.0620 1.2014 8 6 2.3615 1.8299 1.2003 9 6 2.0191 1.1585 2.5053 10 1 1.5335 0.2033 2.3059 11 6 3.2997 0.9214 3.3081 12 6 1.0873 2.0412 3.2950 13 1 0.7741 2.9930 2.8920 14 6 0.6340 1.6332 4.5315 15 7 1.0150 0.4740 5.0220 16 14 -0.5216 2.7271 5.5101 17 1 -1.7643 2.9572 4.7303 18 1 -0.8590 2.0656 6.7961 19 1 0.1402 4.0284 5.7820 20 8 3.1959 3.4632 -2.4897 21 6 2.3161 2.6445 -3.2828 22 8 2.1660 1.4462 -2.4990 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 3.7916 4.6458 0.0128 27 1 3.2327 3.5412 2.1380 28 1 3.9737 0.2829 2.7369 29 1 3.7858 1.8764 3.5075 30 1 3.0520 0.4361 4.2523 31 1 0.6957 0.1869 5.8917 32 1 1.3528 3.1365 -3.4177 33 1 2.7688 2.4196 -4.2485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:40 Heat of formation + Delta-G solvation = -93.849840 kcal Electronic energy + Delta-G solvation = -18672.023214 eV Core-core repulsion = 15663.691814 eV Total energy + Delta-G solvation = -3008.331400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.12133 -40.35326 -38.10112 -37.03690 -35.87191 -33.02338 -30.92447 -29.64132 -27.75059 -27.15196 -26.59647 -24.57147 -23.44492 -21.85736 -19.37323 -19.00727 -18.43104 -17.82972 -17.56235 -16.71694 -16.47281 -16.28503 -16.07435 -15.14927 -15.13632 -14.70687 -14.13135 -13.94448 -13.74829 -13.52352 -13.32290 -13.13880 -12.82356 -12.77840 -12.39547 -12.30588 -12.05032 -11.62683 -11.44193 -10.95185 -10.91450 -10.42146 -9.50815 -8.93813 -8.05641 -6.20428 0.11639 0.21372 1.46169 1.46532 1.54111 1.79121 2.40942 2.47594 2.55047 2.89006 3.22567 3.71502 3.86175 4.00708 4.20237 4.26396 4.30508 4.38518 4.49818 4.54096 4.70012 4.81736 4.92953 5.00907 5.11220 5.25365 5.35188 5.44490 5.53947 5.66053 5.98589 6.02895 6.08513 6.34803 6.56078 6.87975 7.47449 8.98724 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.006944 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.707803 B = 4031.039653 C = 4289.036350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.347 6.347 3 C 0.083 3.917 4 C -0.003 4.003 5 C 0.016 3.984 6 C -0.094 4.094 7 C -0.093 4.093 8 C -0.061 4.061 9 C 0.080 3.920 10 H 0.013 0.987 11 C -0.123 4.123 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.268 1.268 20 O -0.316 6.316 21 C 0.202 3.798 22 O -0.323 6.323 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.039 0.961 26 H 0.166 0.834 27 H 0.150 0.850 28 H 0.018 0.982 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.101 0.899 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 5.533 -12.421 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.264 6.264 3 C 0.039 3.961 4 C -0.048 4.048 5 C -0.029 4.029 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.062 4.062 9 C 0.061 3.939 10 H 0.032 0.968 11 C -0.181 4.181 12 C -0.559 4.559 13 H 0.075 0.925 14 C -0.180 4.180 15 N -0.554 5.554 16 Si 0.778 3.222 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.193 1.193 20 O -0.233 6.233 21 C 0.092 3.908 22 O -0.240 6.240 23 H 0.070 0.930 24 H 0.129 0.871 25 H 0.057 0.943 26 H 0.183 0.817 27 H 0.168 0.832 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.309 5.190 -12.481 13.581 hybrid contribution -0.914 0.225 0.499 1.065 sum 0.395 5.415 -11.982 13.155 Atomic orbital electron populations 1.23065 0.77856 1.04186 1.00422 1.85966 1.21359 1.24983 1.94123 1.17743 1.01490 0.88233 0.88682 1.20169 1.04525 0.94760 0.85315 1.19679 1.02844 0.93764 0.86578 1.20375 1.02373 1.01472 0.86979 1.20903 0.98208 0.93855 0.98170 1.20630 0.96147 0.94941 0.94460 1.17611 0.94124 0.94775 0.87376 0.96843 1.21653 0.95982 0.99339 1.01084 1.21319 1.27833 1.04299 1.02415 0.92476 1.25663 0.97686 0.96221 0.98465 1.70015 1.45339 1.21273 1.18822 0.85707 0.79461 0.79277 0.77791 1.19980 1.21227 1.19252 1.87282 1.61940 1.60253 1.13839 1.26117 0.95188 0.76054 0.93467 1.87345 1.88871 1.33861 1.13915 0.93010 0.87106 0.94254 0.81654 0.83225 0.96311 0.93980 0.91934 0.92921 0.88185 0.81722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.88 113.37 1.23 2.63 16 2 O -0.35 -15.10 9.26 -93.53 -0.87 -15.97 16 3 C 0.08 3.53 5.71 22.54 0.13 3.66 16 4 C 0.00 -0.11 7.09 22.65 0.16 0.05 16 5 C 0.02 0.52 7.15 22.58 0.16 0.68 16 6 C -0.09 -2.95 10.06 22.37 0.22 -2.73 16 7 C -0.09 -3.45 8.70 22.26 0.19 -3.26 16 8 C -0.06 -2.67 4.75 -19.77 -0.09 -2.76 16 9 C 0.08 4.00 2.44 -12.29 -0.03 3.97 16 10 H 0.01 0.76 6.73 -2.39 -0.02 0.74 16 11 C -0.12 -5.96 8.78 71.98 0.63 -5.33 16 12 C -0.52 -27.43 8.24 25.60 0.21 -27.22 16 13 H 0.06 2.94 7.60 -2.91 -0.02 2.92 16 14 C 0.02 1.00 5.30 84.65 0.45 1.45 16 15 N -0.92 -51.52 11.32 21.44 0.24 -51.28 16 16 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 O -0.32 -9.08 11.40 -76.25 -0.87 -9.95 16 21 C 0.20 4.58 8.89 113.37 1.01 5.59 16 22 O -0.32 -10.70 11.41 -76.93 -0.88 -11.58 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 25 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 26 H 0.17 3.96 8.06 -2.91 -0.02 3.93 16 27 H 0.15 5.27 7.57 -2.91 -0.02 5.25 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 1.87 7.38 -2.39 -0.02 1.85 16 30 H 0.06 3.34 6.07 -2.38 -0.01 3.32 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.30 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.17 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -64.02 282.76 5.05 -58.96 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.12 Total: 9.05 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.28 Total: -23.27 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.24 Total: -51.28 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -2.61 Total: -37.50 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -64.02 5.05 -58.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.887 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds