Wall clock time and date at job start Mon Mar 30 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48495 * 109.47295 * 269.99577 * 3 2 1 5 5 H 1.48507 * 109.47160 * 29.99795 * 3 2 1 6 6 H 1.48501 * 109.47070 * 149.99534 * 3 2 1 7 7 C 1.37878 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47321 * 184.62752 * 9 7 2 11 11 C 1.38249 * 120.00164 * 269.12146 * 10 9 7 12 12 C 1.38217 * 120.00382 * 179.97438 * 11 10 9 13 13 C 1.38250 * 119.99471 * 0.04738 * 12 11 10 14 14 C 1.38211 * 120.00620 * 359.97230 * 13 12 11 15 15 C 1.38219 * 120.00057 * 89.13648 * 10 9 7 16 16 C 1.50702 * 119.99856 * 359.97438 * 15 10 9 17 17 F 1.39904 * 110.98490 * 59.11346 * 16 15 10 18 18 C 1.55303 * 111.12832 * 294.86859 * 16 15 10 19 19 C 1.54375 * 102.25500 * 207.94692 * 18 16 15 20 20 O 1.43243 * 107.58697 * 21.35785 * 19 18 16 21 21 C 1.43645 * 109.97175 * 1.70830 * 20 19 18 22 22 H 0.96997 * 119.99698 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47413 * 64.62364 * 9 7 2 24 24 H 1.09010 * 109.46750 * 304.62348 * 9 7 2 25 25 H 1.08003 * 119.99984 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.99911 * 180.31897 * 12 11 10 27 27 H 1.08007 * 119.99862 * 179.97438 * 13 12 11 28 28 H 1.08001 * 120.00438 * 180.02562 * 14 13 12 29 29 H 1.09003 * 110.84772 * 326.13976 * 18 16 15 30 30 H 1.09008 * 110.84705 * 89.75699 * 18 16 15 31 31 H 1.08997 * 109.83129 * 261.84407 * 19 18 16 32 32 H 1.09001 * 109.83165 * 140.86727 * 19 18 16 33 33 H 1.09001 * 110.31254 * 216.65634 * 21 20 19 34 34 H 1.09006 * 110.39147 * 94.53149 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2262 -3.6423 0.1158 11 6 2.7437 -4.2271 -1.0250 12 6 3.6386 -5.2753 -0.9193 13 6 4.0153 -5.7394 0.3273 14 6 3.4977 -5.1550 1.4678 15 6 2.6031 -4.1062 1.3621 16 6 2.0392 -3.4685 2.6056 17 9 0.6433 -3.5607 2.6271 18 6 2.5057 -1.9933 2.7391 19 6 2.4814 -1.7789 4.2677 20 8 2.5519 -3.0687 4.8868 21 6 2.6596 -4.0898 3.8823 22 1 -0.4849 0.8400 -0.0004 23 1 0.6883 -2.5938 -0.9281 24 1 0.5634 -2.5216 0.8460 25 1 2.4494 -3.8645 -1.9988 26 1 4.0467 -5.7287 -1.8105 27 1 4.7142 -6.5587 0.4099 28 1 3.7924 -5.5173 2.4416 29 1 3.5146 -1.8684 2.3458 30 1 1.8081 -1.3193 2.2417 31 1 1.5562 -1.2802 4.5565 32 1 3.3378 -1.1762 4.5702 33 1 2.1002 -4.9760 4.1821 34 1 3.7054 -4.3439 3.7095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:58 Heat of formation + Delta-G solvation = -72.651457 kcal Electronic energy + Delta-G solvation = -18987.690186 eV Core-core repulsion = 15992.650806 eV Total energy + Delta-G solvation = -2995.039380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.14075 -39.28741 -38.05898 -33.77251 -32.46024 -31.32136 -29.93176 -28.06948 -26.99106 -23.38166 -23.33502 -21.63569 -20.49797 -19.80299 -16.90193 -16.47568 -16.33798 -15.23665 -15.05823 -14.81068 -14.71276 -14.39832 -14.07583 -13.46391 -13.21430 -12.65900 -12.53720 -12.38598 -11.83590 -11.71372 -11.47548 -11.11412 -11.08085 -10.81712 -10.68684 -10.62223 -10.24954 -9.90155 -9.61665 -9.45442 -9.18179 -8.48169 -8.37560 -7.93070 -6.11618 -4.14308 1.77735 1.98756 3.23217 3.31331 3.32988 4.04509 4.22901 4.39788 4.62003 4.91528 5.05423 5.17043 5.21202 5.40372 5.42564 5.54210 5.60823 5.72585 5.79424 5.98738 6.07202 6.15665 6.21211 6.42218 6.58591 6.68683 6.87431 6.92976 7.04710 7.07032 7.23478 7.45580 7.59967 7.75583 7.84903 8.22422 8.88868 9.45753 10.97374 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.010725 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.817845 B = 2609.993570 C = 3584.500685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.009 4.009 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.151 4.151 14 C -0.111 4.111 15 C -0.120 4.120 16 C 0.144 3.856 17 F -0.186 7.186 18 C -0.166 4.166 19 C 0.044 3.956 20 O -0.385 6.385 21 C 0.033 3.967 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.053 0.947 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 -7.544 3.674 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.142 4.142 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.010 4.010 11 C -0.145 4.145 12 C -0.132 4.132 13 C -0.169 4.169 14 C -0.129 4.129 15 C -0.121 4.121 16 C 0.126 3.874 17 F -0.166 7.166 18 C -0.203 4.203 19 C -0.032 4.032 20 O -0.304 6.304 21 C -0.044 4.044 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.107 0.893 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.223 -7.448 3.909 10.463 hybrid contribution 0.427 0.967 -0.411 1.134 sum 6.649 -6.481 3.498 9.922 Atomic orbital electron populations 1.69964 1.05914 1.26881 1.49663 1.24972 0.94821 0.98962 0.95409 0.86666 0.79959 0.83577 0.78384 1.20562 1.21057 1.19650 1.20936 0.92875 0.89541 1.51211 0.92478 1.18668 0.93088 0.89387 0.99500 1.20568 0.94925 0.94499 0.90968 1.21118 0.98142 0.96488 0.98751 1.21119 0.97842 0.97128 0.97074 1.20849 1.02115 1.01324 0.92596 1.20994 0.97581 0.95894 0.98436 1.19600 1.00663 0.98026 0.93782 1.20843 0.76518 0.96993 0.93095 1.92854 1.29557 1.97083 1.97135 1.24030 1.05573 0.95866 0.94834 1.23331 1.01539 0.85118 0.93213 1.88355 1.95290 1.15366 1.31391 1.24060 1.00988 0.92146 0.87227 0.92698 0.95657 0.92940 0.86103 0.86826 0.86786 0.86351 0.89316 0.84420 0.90998 0.91459 0.89102 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 2 C 0.06 1.61 5.16 -17.82 -0.09 1.52 16 3 Si 0.89 20.40 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.51 -13.08 6.07 -34.44 -0.21 -13.28 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.75 4.34 -29.03 -0.13 0.62 16 10 C -0.01 -0.20 5.01 -104.63 -0.52 -0.73 16 11 C -0.13 -2.39 9.70 -39.58 -0.38 -2.77 16 12 C -0.11 -1.79 10.05 -39.58 -0.40 -2.19 16 13 C -0.15 -2.25 10.05 -39.59 -0.40 -2.64 16 14 C -0.11 -1.78 9.02 -39.59 -0.36 -2.14 16 15 C -0.12 -2.30 5.06 -104.62 -0.53 -2.83 16 16 C 0.14 2.76 0.98 -89.52 -0.09 2.67 16 17 F -0.19 -4.07 15.06 2.25 0.03 -4.03 16 18 C -0.17 -3.24 4.57 -24.79 -0.11 -3.35 16 19 C 0.04 0.76 7.79 37.88 0.30 1.05 16 20 O -0.38 -6.77 11.36 -35.23 -0.40 -7.17 16 21 C 0.03 0.53 6.18 38.18 0.24 0.76 16 22 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.05 1.40 5.26 -51.92 -0.27 1.12 16 25 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 28 H 0.12 1.57 5.83 -52.49 -0.31 1.26 16 29 H 0.09 1.69 8.03 -51.93 -0.42 1.28 16 30 H 0.14 3.16 5.32 -51.92 -0.28 2.88 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.10 6.21 -51.93 -0.32 0.78 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -28.43 277.90 -7.24 -35.68 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.09 Total: 3.50 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.69 Total: -23.31 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.74 Total: -24.23 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.40 Total: -7.17 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.03 Total: -4.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.43 -7.24 -35.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.975 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds