Wall clock time and date at job start Mon Mar 30 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48495 * 109.47295 * 269.99577 * 3 2 1 5 5 H 1.48507 * 109.47160 * 29.99795 * 3 2 1 6 6 H 1.48501 * 109.47070 * 149.99534 * 3 2 1 7 7 C 1.37878 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47321 * 184.62752 * 9 7 2 11 11 C 1.38249 * 120.00164 * 269.12146 * 10 9 7 12 12 C 1.38217 * 120.00382 * 179.97438 * 11 10 9 13 13 C 1.38250 * 119.99471 * 0.04738 * 12 11 10 14 14 C 1.38211 * 120.00620 * 359.97230 * 13 12 11 15 15 C 1.38219 * 120.00057 * 89.13648 * 10 9 7 16 16 C 1.50702 * 119.99856 * 359.97438 * 15 10 9 17 17 F 1.39904 * 110.98490 * 59.11346 * 16 15 10 18 18 C 1.55303 * 111.12832 * 294.86859 * 16 15 10 19 19 C 1.54375 * 102.25500 * 207.94692 * 18 16 15 20 20 O 1.43243 * 107.58697 * 21.35785 * 19 18 16 21 21 C 1.43645 * 109.97175 * 1.70830 * 20 19 18 22 22 H 0.96997 * 119.99698 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47413 * 64.62364 * 9 7 2 24 24 H 1.09010 * 109.46750 * 304.62348 * 9 7 2 25 25 H 1.08003 * 119.99984 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.99911 * 180.31897 * 12 11 10 27 27 H 1.08007 * 119.99862 * 179.97438 * 13 12 11 28 28 H 1.08001 * 120.00438 * 180.02562 * 14 13 12 29 29 H 1.09003 * 110.84772 * 326.13976 * 18 16 15 30 30 H 1.09008 * 110.84705 * 89.75699 * 18 16 15 31 31 H 1.08997 * 109.83129 * 261.84407 * 19 18 16 32 32 H 1.09001 * 109.83165 * 140.86727 * 19 18 16 33 33 H 1.09001 * 110.31254 * 216.65634 * 21 20 19 34 34 H 1.09006 * 110.39147 * 94.53149 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2262 -3.6423 0.1158 11 6 2.7437 -4.2271 -1.0250 12 6 3.6386 -5.2753 -0.9193 13 6 4.0153 -5.7394 0.3273 14 6 3.4977 -5.1550 1.4678 15 6 2.6031 -4.1062 1.3621 16 6 2.0392 -3.4685 2.6056 17 9 0.6433 -3.5607 2.6271 18 6 2.5057 -1.9933 2.7391 19 6 2.4814 -1.7789 4.2677 20 8 2.5519 -3.0687 4.8868 21 6 2.6596 -4.0898 3.8823 22 1 -0.4849 0.8400 -0.0004 23 1 0.6883 -2.5938 -0.9281 24 1 0.5634 -2.5216 0.8460 25 1 2.4494 -3.8645 -1.9988 26 1 4.0467 -5.7287 -1.8105 27 1 4.7142 -6.5587 0.4099 28 1 3.7924 -5.5173 2.4416 29 1 3.5146 -1.8684 2.3458 30 1 1.8081 -1.3193 2.2417 31 1 1.5562 -1.2802 4.5565 32 1 3.3378 -1.1762 4.5702 33 1 2.1002 -4.9760 4.1821 34 1 3.7054 -4.3439 3.7095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:57 Heat of formation + Delta-G solvation = -88.753513 kcal Electronic energy + Delta-G solvation = -18988.388423 eV Core-core repulsion = 15992.650806 eV Total energy + Delta-G solvation = -2995.737617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.73998 -40.68141 -39.42073 -35.61442 -33.92455 -32.99568 -31.34827 -29.49522 -28.68188 -25.19310 -24.70564 -23.09304 -21.95776 -21.24187 -18.49327 -18.26493 -17.83804 -16.75523 -16.51815 -16.31762 -16.15084 -15.97129 -15.52438 -14.96866 -14.64948 -14.44655 -14.06295 -13.85681 -13.42373 -13.32670 -13.05460 -12.70067 -12.61712 -12.52559 -12.32561 -12.24646 -11.77807 -11.53968 -11.39478 -11.18693 -10.59027 -10.48151 -9.71048 -9.40922 -8.16812 -6.25924 0.43723 0.62334 1.38568 1.40101 1.49883 2.39077 2.70192 2.92206 3.13963 3.23656 3.49730 3.72345 3.84390 4.09913 4.15201 4.25130 4.29451 4.33995 4.54416 4.66032 4.71782 4.80517 4.85003 5.05833 5.15416 5.20889 5.30932 5.34896 5.49072 5.59717 5.67169 5.78434 5.85982 6.03300 6.13218 6.24813 6.83100 7.37832 8.92608 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.010725 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.817845 B = 2609.993570 C = 3584.500685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.048 4.048 11 C -0.146 4.146 12 C -0.106 4.106 13 C -0.135 4.135 14 C -0.106 4.106 15 C -0.134 4.134 16 C 0.130 3.870 17 F -0.211 7.211 18 C -0.165 4.165 19 C 0.050 3.950 20 O -0.392 6.392 21 C 0.040 3.960 22 H 0.263 0.737 23 H -0.011 1.011 24 H 0.024 0.976 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.567 -9.282 4.520 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.005 3.995 10 C -0.048 4.048 11 C -0.164 4.164 12 C -0.124 4.124 13 C -0.153 4.153 14 C -0.124 4.124 15 C -0.135 4.135 16 C 0.111 3.889 17 F -0.191 7.191 18 C -0.203 4.203 19 C -0.026 4.026 20 O -0.312 6.312 21 C -0.036 4.036 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.042 0.958 25 H 0.130 0.870 26 H 0.167 0.833 27 H 0.178 0.822 28 H 0.172 0.828 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.375 -9.197 4.753 13.966 hybrid contribution -0.535 1.400 -0.712 1.659 sum 8.840 -7.797 4.041 12.461 Atomic orbital electron populations 1.70101 1.07651 1.27586 1.51422 1.25757 0.95451 1.02422 0.95141 0.85679 0.79144 0.79365 0.78425 1.20275 1.20974 1.18186 1.21097 0.92688 0.90260 1.49860 0.92563 1.18352 0.93429 0.91435 0.96276 1.20313 0.96263 0.94953 0.93259 1.21181 0.99555 0.98031 0.97634 1.21488 0.96134 0.95454 0.99287 1.21407 1.01197 1.01250 0.91420 1.21391 0.95964 0.94240 1.00787 1.19696 1.01830 0.99360 0.92582 1.21176 0.75379 0.97153 0.95151 1.92798 1.31807 1.97162 1.97343 1.23838 1.04328 0.95794 0.96293 1.23293 1.02436 0.85524 0.91381 1.88333 1.95486 1.15553 1.31832 1.24197 1.02609 0.91906 0.84918 0.92838 0.99251 0.95783 0.86985 0.83314 0.82197 0.82810 0.89131 0.88567 0.91717 0.88839 0.87371 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 2 C 0.01 0.58 5.16 84.65 0.44 1.02 16 3 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.50 -26.99 6.07 25.60 0.16 -26.83 16 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.04 2.22 4.34 29.10 0.13 2.35 16 10 C -0.05 -2.07 5.01 -19.87 -0.10 -2.17 16 11 C -0.15 -5.46 9.70 22.27 0.22 -5.24 16 12 C -0.11 -2.97 10.05 22.27 0.22 -2.75 16 13 C -0.14 -3.32 10.05 22.27 0.22 -3.10 16 14 C -0.11 -2.97 9.02 22.27 0.20 -2.77 16 15 C -0.13 -5.01 5.06 -19.86 -0.10 -5.11 16 16 C 0.13 4.94 0.98 -10.08 -0.01 4.93 16 17 F -0.21 -9.60 15.06 44.97 0.68 -8.92 16 18 C -0.16 -6.52 4.57 31.85 0.15 -6.37 16 19 C 0.05 1.67 7.79 72.45 0.56 2.23 16 20 O -0.39 -12.96 11.36 -148.98 -1.69 -14.65 16 21 C 0.04 1.17 6.18 72.65 0.45 1.62 16 22 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 23 H -0.01 -0.63 8.08 -2.39 -0.02 -0.65 16 24 H 0.02 1.39 5.26 -2.38 -0.01 1.37 16 25 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 26 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.15 3.16 5.83 -2.91 -0.02 3.15 16 29 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 30 H 0.10 4.65 5.32 -2.38 -0.01 4.64 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.11 2.54 6.21 -2.38 -0.01 2.52 16 Total: -1.00 -65.64 277.90 4.93 -60.71 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.10 Total: 15.06 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 2.53 Total: -42.20 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.69 Total: -14.65 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 0.68 Total: -8.92 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.64 4.93 -60.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.044 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds