Wall clock time and date at job start Mon Mar 30 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46879 * 2 1 4 4 C 1.50696 * 109.46905 * 119.99654 * 2 1 3 5 5 H 1.08000 * 119.99527 * 112.40374 * 4 2 1 6 6 C 1.37870 * 120.00456 * 292.40236 * 4 2 1 7 7 N 1.31515 * 120.00339 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99912 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46987 * 90.00097 * 8 6 4 10 10 H 1.48499 * 109.47233 * 209.99766 * 8 6 4 11 11 H 1.48501 * 109.47063 * 329.99935 * 8 6 4 12 12 C 1.52997 * 109.47200 * 240.00138 * 2 1 3 13 13 C 1.50708 * 115.54891 * 70.53358 * 12 2 1 14 14 C 1.38241 * 119.98012 * 231.21241 * 13 12 2 15 15 C 1.38223 * 120.00674 * 179.72489 * 14 13 12 16 16 C 1.38348 * 119.98550 * 0.55013 * 15 14 13 17 17 Cl 1.73603 * 120.01083 * 179.69989 * 16 15 14 18 18 C 1.38347 * 119.97612 * 359.72782 * 16 15 14 19 19 C 1.38212 * 119.98799 * 359.97438 * 18 16 15 20 20 C 1.52999 * 117.49737 * 216.20018 * 12 2 1 21 21 C 1.53001 * 117.49735 * 284.86265 * 12 2 1 22 22 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47436 * 299.99927 * 1 2 3 24 24 H 1.09004 * 109.47156 * 60.00078 * 1 2 3 25 25 H 0.96999 * 120.00618 * 180.02562 * 7 6 4 26 26 H 1.08000 * 120.00078 * 359.97438 * 14 13 12 27 27 H 1.07997 * 120.00504 * 180.27045 * 15 14 13 28 28 H 1.08005 * 120.00991 * 179.97438 * 18 16 15 29 29 H 1.08001 * 119.99756 * 179.97438 * 19 18 16 30 30 H 1.09000 * 117.49754 * 215.00288 * 20 12 2 31 31 H 1.09000 * 117.49805 * 0.02932 * 20 12 2 32 32 H 1.08997 * 117.49881 * 359.97438 * 21 12 2 33 33 H 1.09000 * 117.49808 * 144.97743 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5483 -1.6543 1.1361 6 6 1.8331 -0.1551 2.4766 7 7 2.2710 -0.7753 3.5505 8 14 0.9398 1.4774 2.6399 9 1 -0.5170 1.2317 2.7903 10 1 1.4455 2.2011 3.8339 11 1 1.1808 2.2971 1.4253 12 6 2.0400 -0.7212 -1.2492 13 6 1.8295 0.0071 -2.5517 14 6 1.2305 -0.6403 -3.6162 15 6 1.0320 0.0290 -4.8092 16 6 1.4431 1.3433 -4.9415 17 17 1.2011 2.1820 -6.4421 18 6 2.0477 1.9888 -3.8776 19 6 2.2401 1.3206 -2.6831 20 6 3.3080 -1.5658 -1.1091 21 6 1.9473 -2.2482 -1.2707 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.1305 -0.3849 4.4273 26 1 0.9140 -1.6678 -3.5145 27 1 0.5601 -0.4755 -5.6394 28 1 2.3692 3.0148 -3.9803 29 1 2.7124 1.8242 -1.8527 30 1 3.9899 -1.5948 -1.9590 31 1 3.7786 -1.6081 -0.1268 32 1 1.5233 -2.7390 -0.3946 33 1 1.7337 -2.7261 -2.2268 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261133233.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:35 Heat of formation + Delta-G solvation = 36.282444 kcal Electronic energy + Delta-G solvation = -15977.512261 eV Core-core repulsion = 13415.532985 eV Total energy + Delta-G solvation = -2561.979276 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67129 -37.37634 -36.14534 -32.95653 -31.10354 -30.56175 -30.09886 -25.08389 -23.78117 -22.74491 -21.43819 -21.27440 -18.53279 -17.07513 -16.62824 -15.23197 -14.97432 -14.62266 -14.37710 -13.63105 -13.40916 -13.30751 -12.89582 -12.28748 -12.13971 -11.78311 -11.66005 -11.43516 -11.19918 -10.97682 -10.71729 -10.58349 -10.34187 -10.11558 -9.65361 -9.50530 -9.11514 -8.91890 -8.84846 -8.58014 -8.12476 -6.08629 -4.07745 1.32676 1.45139 2.19207 3.26949 3.37273 3.38183 3.78771 4.40234 4.53980 4.98508 4.99818 5.07134 5.24621 5.49632 5.53939 5.57798 5.80376 5.83996 5.94596 6.12321 6.28075 6.31806 6.37568 6.43776 6.52673 6.69065 6.77446 6.84846 6.98160 7.00576 7.06124 7.15528 7.47306 7.75759 8.49508 8.93845 9.53824 11.03614 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.006061 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.123861 B = 4618.669002 C = 5111.622855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 H 0.033 0.967 4 C -0.514 4.514 5 H 0.084 0.916 6 C 0.072 3.928 7 N -0.901 5.901 8 Si 0.877 3.123 9 H -0.279 1.279 10 H -0.295 1.295 11 H -0.264 1.264 12 C -0.077 4.077 13 C -0.016 4.016 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.049 4.049 17 Cl -0.087 7.087 18 C -0.110 4.110 19 C -0.100 4.100 20 C -0.158 4.158 21 C -0.170 4.170 22 H 0.050 0.950 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.263 0.737 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 2.737 -15.415 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.551 4.551 5 H 0.102 0.898 6 C -0.129 4.129 7 N -0.539 5.539 8 Si 0.707 3.293 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.189 1.189 12 C -0.077 4.077 13 C -0.016 4.016 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.075 4.075 17 Cl -0.059 7.059 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.194 4.194 21 C -0.206 4.206 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.454 2.820 -15.350 15.674 hybrid contribution -0.630 1.001 0.094 1.186 sum -2.084 3.821 -15.256 15.865 Atomic orbital electron populations 1.22042 0.99051 1.00534 0.98216 1.18686 0.91587 0.95831 0.91085 0.94892 1.21148 1.36999 1.08273 0.88728 0.89769 1.24959 0.95143 0.96935 0.95896 1.69885 1.46788 1.39098 0.98178 0.86955 0.79979 0.84977 0.77421 1.20545 1.22258 1.18928 1.20245 1.03033 0.91763 0.92618 1.19525 0.94409 0.93611 0.94086 1.21097 0.99426 1.00477 0.91964 1.20958 1.00799 0.92767 0.98471 1.20828 1.05085 0.93817 0.87815 1.98339 1.95870 1.78390 1.33259 1.21004 0.99550 1.00227 0.92103 1.21067 0.99451 0.94449 0.96841 1.23157 0.90245 1.02849 1.03196 1.22985 1.01355 0.94289 1.01997 0.93099 0.94336 0.95655 0.92707 0.85061 0.85471 0.85347 0.84798 0.90738 0.86510 0.87707 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.69 37.16 0.32 -2.67 16 2 C 0.05 1.04 1.79 -91.78 -0.16 0.87 16 3 H 0.03 0.76 5.75 -51.93 -0.30 0.46 16 4 C -0.51 -13.38 7.73 -34.45 -0.27 -13.65 16 5 H 0.08 2.31 5.38 -52.49 -0.28 2.03 16 6 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 7 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 8 Si 0.88 21.35 24.79 -169.99 -4.21 17.13 16 9 H -0.28 -6.71 6.90 56.52 0.39 -6.32 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.16 6.33 56.52 0.36 -5.80 16 12 C -0.08 -1.43 1.79 -155.66 -0.28 -1.71 16 13 C -0.02 -0.27 4.91 -104.62 -0.51 -0.78 16 14 C -0.11 -1.61 9.32 -39.59 -0.37 -1.97 16 15 C -0.11 -1.46 9.83 -39.55 -0.39 -1.85 16 16 C -0.05 -0.66 6.32 -39.50 -0.25 -0.91 16 17 Cl -0.09 -1.04 28.96 -51.86 -1.50 -2.55 16 18 C -0.11 -1.52 9.83 -39.55 -0.39 -1.91 16 19 C -0.10 -1.57 9.33 -39.59 -0.37 -1.94 16 20 C -0.16 -2.87 9.36 -26.69 -0.25 -3.12 16 21 C -0.17 -2.96 9.00 -26.69 -0.24 -3.20 16 22 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.04 0.85 4.30 -51.93 -0.22 0.63 16 24 H 0.02 0.48 7.88 -51.93 -0.41 0.07 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.13 1.71 6.28 -52.49 -0.33 1.38 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.13 2.11 7.39 -52.49 -0.39 1.72 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.12 2.40 6.17 -51.93 -0.32 2.08 16 32 H 0.10 2.02 7.33 -51.93 -0.38 1.64 16 33 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -27.80 279.05 -7.84 -35.64 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.85 Total: 2.39 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -3.25 Total: -30.93 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.77 Total: -25.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.21 Total: 17.13 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.80 -7.84 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133233.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.924 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds