Wall clock time and date at job start Mon Mar 30 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46879 * 2 1 4 4 C 1.50696 * 109.46905 * 119.99654 * 2 1 3 5 5 H 1.08000 * 119.99527 * 112.40374 * 4 2 1 6 6 C 1.37870 * 120.00456 * 292.40236 * 4 2 1 7 7 N 1.31515 * 120.00339 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99912 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46987 * 90.00097 * 8 6 4 10 10 H 1.48499 * 109.47233 * 209.99766 * 8 6 4 11 11 H 1.48501 * 109.47063 * 329.99935 * 8 6 4 12 12 C 1.52997 * 109.47200 * 240.00138 * 2 1 3 13 13 C 1.50708 * 115.54891 * 70.53358 * 12 2 1 14 14 C 1.38241 * 119.98012 * 231.21241 * 13 12 2 15 15 C 1.38223 * 120.00674 * 179.72489 * 14 13 12 16 16 C 1.38348 * 119.98550 * 0.55013 * 15 14 13 17 17 Cl 1.73603 * 120.01083 * 179.69989 * 16 15 14 18 18 C 1.38347 * 119.97612 * 359.72782 * 16 15 14 19 19 C 1.38212 * 119.98799 * 359.97438 * 18 16 15 20 20 C 1.52999 * 117.49737 * 216.20018 * 12 2 1 21 21 C 1.53001 * 117.49735 * 284.86265 * 12 2 1 22 22 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47436 * 299.99927 * 1 2 3 24 24 H 1.09004 * 109.47156 * 60.00078 * 1 2 3 25 25 H 0.96999 * 120.00618 * 180.02562 * 7 6 4 26 26 H 1.08000 * 120.00078 * 359.97438 * 14 13 12 27 27 H 1.07997 * 120.00504 * 180.27045 * 15 14 13 28 28 H 1.08005 * 120.00991 * 179.97438 * 18 16 15 29 29 H 1.08001 * 119.99756 * 179.97438 * 19 18 16 30 30 H 1.09000 * 117.49754 * 215.00288 * 20 12 2 31 31 H 1.09000 * 117.49805 * 0.02932 * 20 12 2 32 32 H 1.08997 * 117.49881 * 359.97438 * 21 12 2 33 33 H 1.09000 * 117.49808 * 144.97743 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5483 -1.6543 1.1361 6 6 1.8331 -0.1551 2.4766 7 7 2.2710 -0.7753 3.5505 8 14 0.9398 1.4774 2.6399 9 1 -0.5170 1.2317 2.7903 10 1 1.4455 2.2011 3.8339 11 1 1.1808 2.2971 1.4253 12 6 2.0400 -0.7212 -1.2492 13 6 1.8295 0.0071 -2.5517 14 6 1.2305 -0.6403 -3.6162 15 6 1.0320 0.0290 -4.8092 16 6 1.4431 1.3433 -4.9415 17 17 1.2011 2.1820 -6.4421 18 6 2.0477 1.9888 -3.8776 19 6 2.2401 1.3206 -2.6831 20 6 3.3080 -1.5658 -1.1091 21 6 1.9473 -2.2482 -1.2707 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.1305 -0.3849 4.4273 26 1 0.9140 -1.6678 -3.5145 27 1 0.5601 -0.4755 -5.6394 28 1 2.3692 3.0148 -3.9803 29 1 2.7124 1.8242 -1.8527 30 1 3.9899 -1.5948 -1.9590 31 1 3.7786 -1.6081 -0.1268 32 1 1.5233 -2.7390 -0.3946 33 1 1.7337 -2.7261 -2.2268 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133233.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:35 Heat of formation + Delta-G solvation = 22.674124 kcal Electronic energy + Delta-G solvation = -15978.102362 eV Core-core repulsion = 13415.532985 eV Total energy + Delta-G solvation = -2562.569377 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91341 -38.68112 -37.20541 -34.87739 -32.72347 -31.88471 -31.26792 -27.04342 -25.15958 -23.92542 -22.93209 -22.64712 -20.04868 -18.72956 -18.02027 -16.75102 -16.32393 -16.13199 -15.71325 -15.08473 -14.79609 -14.43612 -14.36542 -14.03996 -13.83564 -13.18507 -13.12969 -12.74083 -12.49041 -12.47598 -12.20673 -12.05250 -11.78710 -11.72067 -11.42077 -11.08962 -10.83097 -10.69447 -10.49256 -9.95099 -9.32947 -8.22670 -6.23627 0.21524 0.38425 1.18514 1.32182 1.36716 1.45392 2.36579 2.65886 3.09136 3.18198 3.77646 3.92481 4.00386 4.10270 4.24410 4.38876 4.47046 4.56057 4.72209 4.77441 4.85093 4.92262 5.03368 5.08128 5.17636 5.21199 5.30311 5.30494 5.52270 5.55086 5.63285 5.75769 5.80316 5.90967 6.40721 6.83583 7.40613 8.92730 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.006061 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.123861 B = 4618.669002 C = 5111.622855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 H 0.026 0.974 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.951 5.951 8 Si 0.930 3.070 9 H -0.272 1.272 10 H -0.300 1.300 11 H -0.247 1.247 12 C -0.078 4.078 13 C -0.033 4.033 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.051 4.051 17 Cl -0.072 7.072 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.163 4.163 21 C -0.157 4.157 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.049 0.951 25 H 0.262 0.738 26 H 0.147 0.853 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 3.593 -18.406 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 H 0.044 0.956 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.592 5.592 8 Si 0.757 3.243 9 H -0.198 1.198 10 H -0.227 1.227 11 H -0.171 1.171 12 C -0.078 4.078 13 C -0.033 4.033 14 C -0.128 4.128 15 C -0.124 4.124 16 C -0.078 4.078 17 Cl -0.043 7.043 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.199 4.199 21 C -0.194 4.194 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.164 0.836 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.571 3.683 -18.368 18.909 hybrid contribution -0.240 0.700 0.925 1.185 sum -2.811 4.383 -17.443 18.203 Atomic orbital electron populations 1.21936 0.97875 1.00766 0.98742 1.18618 0.92477 0.95280 0.91108 0.95601 1.21483 1.35095 1.07229 0.90288 0.92404 1.25708 0.96425 1.00273 0.95793 1.70027 1.49357 1.41104 0.98710 0.86084 0.79038 0.81441 0.77724 1.19839 1.22748 1.17061 1.20040 1.02930 0.92216 0.92589 1.19350 0.96521 0.93964 0.93505 1.21222 0.98739 1.01154 0.91650 1.21226 0.99917 0.92579 0.98663 1.20989 1.04339 0.94158 0.88267 1.98350 1.95720 1.78115 1.32142 1.21146 0.99146 1.00963 0.91507 1.21066 1.00153 0.94514 0.97484 1.23042 0.90869 1.03748 1.02289 1.22970 1.00166 0.93605 1.02649 0.93075 0.95541 0.93232 0.92924 0.83584 0.82906 0.83692 0.85769 0.88331 0.89987 0.90270 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.69 71.98 0.63 -4.94 16 2 C 0.04 1.93 1.79 -11.54 -0.02 1.91 16 3 H 0.03 1.18 5.75 -2.39 -0.01 1.17 16 4 C -0.50 -26.90 7.73 25.60 0.20 -26.70 16 5 H 0.06 3.34 5.38 -2.91 -0.02 3.33 16 6 C 0.01 0.82 5.46 84.65 0.46 1.28 16 7 N -0.95 -58.36 13.96 21.44 0.30 -58.06 16 8 Si 0.93 44.31 24.79 68.60 1.70 46.01 16 9 H -0.27 -12.60 6.90 99.48 0.69 -11.91 16 10 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.25 -10.93 6.33 99.48 0.63 -10.30 16 12 C -0.08 -2.82 1.79 -52.93 -0.09 -2.92 16 13 C -0.03 -1.01 4.91 -19.86 -0.10 -1.11 16 14 C -0.11 -2.76 9.32 22.27 0.21 -2.55 16 15 C -0.11 -2.33 9.83 22.29 0.22 -2.11 16 16 C -0.05 -1.19 6.32 22.32 0.14 -1.05 16 17 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.55 16 18 C -0.11 -2.71 9.83 22.29 0.22 -2.49 16 19 C -0.11 -3.34 9.33 22.26 0.21 -3.14 16 20 C -0.16 -5.89 9.36 30.62 0.29 -5.60 16 21 C -0.16 -5.32 9.00 30.62 0.28 -5.05 16 22 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.03 1.12 4.30 -2.39 -0.01 1.11 16 24 H 0.05 1.77 7.88 -2.38 -0.02 1.76 16 25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.15 3.18 6.28 -2.91 -0.02 3.16 16 27 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.12 3.80 7.39 -2.91 -0.02 3.78 16 30 H 0.10 3.05 8.14 -2.39 -0.02 3.04 16 31 H 0.08 3.54 6.17 -2.39 -0.01 3.52 16 32 H 0.08 3.09 7.33 -2.39 -0.02 3.07 16 33 H 0.11 3.01 6.43 -2.39 -0.02 3.00 16 Total: -1.00 -60.54 279.05 5.57 -54.97 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.02 Total: 13.11 kcal Atomic # 6 Polarization: -57.10 SS G_CDS: 2.63 Total: -54.47 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.30 Total: -58.06 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.70 Total: 46.01 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.55 kcal Total: -60.54 5.57 -54.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133233.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.643 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds