Wall clock time and date at job start Mon Mar 30 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46675 * 2 1 4 4 C 1.50697 * 109.47353 * 239.99962 * 2 1 3 5 5 H 1.08004 * 120.00030 * 324.81233 * 4 2 1 6 6 C 1.37875 * 119.99930 * 144.80543 * 4 2 1 7 7 N 1.31511 * 120.00339 * 354.07932 * 6 4 2 8 8 Si 1.86803 * 119.99923 * 173.79900 * 6 4 2 9 9 H 1.48498 * 109.47171 * 60.00233 * 8 6 4 10 10 H 1.48498 * 109.47369 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46727 * 300.00318 * 8 6 4 12 12 C 1.52994 * 109.47162 * 119.99797 * 2 1 3 13 13 C 1.50708 * 115.55085 * 279.01092 * 12 2 1 14 14 C 1.38240 * 119.98451 * 113.18139 * 13 12 2 15 15 C 1.38219 * 120.01422 * 179.73026 * 14 13 12 16 16 C 1.38348 * 119.98050 * 0.54699 * 15 14 13 17 17 Cl 1.73602 * 120.00919 * 179.70994 * 16 15 14 18 18 C 1.38350 * 119.97608 * 359.72693 * 16 15 14 19 19 C 1.38209 * 119.99088 * 0.02562 * 18 16 15 20 20 C 1.53002 * 117.49731 * 133.30894 * 12 2 1 21 21 C 1.52998 * 117.49953 * 64.68284 * 12 2 1 22 22 H 1.09004 * 109.47296 * 63.39435 * 1 2 3 23 23 H 1.09006 * 109.47053 * 183.38933 * 1 2 3 24 24 H 1.08998 * 109.47405 * 303.39104 * 1 2 3 25 25 H 0.97002 * 119.99814 * 5.27303 * 7 6 4 26 26 H 1.08009 * 119.99332 * 0.02562 * 14 13 12 27 27 H 1.07992 * 120.00680 * 180.27368 * 15 14 13 28 28 H 1.08003 * 120.00890 * 180.02562 * 18 16 15 29 29 H 1.07998 * 119.99677 * 179.97438 * 19 18 16 30 30 H 1.08988 * 117.49958 * 359.97438 * 20 12 2 31 31 H 1.08998 * 117.49442 * 145.01990 * 20 12 2 32 32 H 1.08998 * 117.49795 * 214.97462 * 21 12 2 33 33 H 1.08996 * 117.49796 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4917 -1.5592 -1.6225 6 6 3.1822 -0.2767 -1.8557 7 7 3.7761 0.8243 -1.4500 8 14 3.9008 -1.2573 -3.2739 9 1 2.9050 -1.3413 -4.3724 10 1 5.1287 -0.5847 -3.7688 11 1 4.2401 -2.6258 -2.8077 12 6 2.0400 -0.7212 1.2492 13 6 2.0559 0.1000 2.5129 14 6 1.2100 -0.2231 3.5574 15 6 1.2280 0.5261 4.7188 16 6 2.0849 1.6065 4.8313 17 17 2.1027 2.5526 6.2867 18 6 2.9272 1.9328 3.7833 19 6 2.9119 1.1797 2.6245 20 6 3.1532 -1.7543 1.0635 21 6 1.7283 -2.2133 1.3802 22 1 -0.3634 0.4602 -0.9189 23 1 -0.3633 -1.0259 0.0608 24 1 -0.3634 0.5656 0.8580 25 1 3.4502 1.2897 -0.6638 26 1 0.5383 -1.0642 3.4679 27 1 0.5703 0.2709 5.5364 28 1 3.5966 2.7758 3.8707 29 1 3.5691 1.4346 1.8063 30 1 3.5218 -1.9205 0.0514 31 1 3.8973 -1.8401 1.8554 32 1 1.5352 -2.6012 2.3804 33 1 1.1603 -2.6813 0.5762 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261133243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:37 Heat of formation + Delta-G solvation = 25.229051 kcal Electronic energy + Delta-G solvation = -16097.591097 eV Core-core repulsion = 13535.132510 eV Total energy + Delta-G solvation = -2562.458587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48663 -37.24973 -36.05319 -32.99754 -30.78598 -30.25511 -29.92901 -24.62719 -23.63930 -22.64588 -21.44890 -21.10780 -18.73469 -16.91457 -16.25718 -15.22290 -14.96512 -14.38612 -13.85459 -13.72012 -13.37518 -13.17156 -13.09448 -12.32599 -11.84353 -11.45921 -11.34628 -11.28627 -11.05133 -10.87044 -10.65172 -10.45582 -10.23724 -10.13358 -9.93705 -9.43393 -8.84892 -8.75209 -8.54756 -8.29104 -8.04817 -6.38365 -4.07692 1.45968 1.57877 2.29232 3.40157 3.41008 3.59746 3.94014 4.47789 4.66241 5.10449 5.12666 5.22499 5.35749 5.64669 5.70150 5.78592 5.96339 6.01632 6.18076 6.25207 6.36953 6.44159 6.48566 6.50010 6.66182 6.74906 6.84802 7.00003 7.07977 7.14228 7.31401 7.42681 7.51482 8.23224 8.40701 8.85888 9.62369 10.99619 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.005870 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.577377 B = 4768.706766 C = 5041.580680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.585 4.585 5 H 0.048 0.952 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 1.058 2.942 9 H -0.289 1.289 10 H -0.283 1.283 11 H -0.287 1.287 12 C -0.081 4.081 13 C -0.017 4.017 14 C -0.111 4.111 15 C -0.114 4.114 16 C -0.050 4.050 17 Cl -0.089 7.089 18 C -0.110 4.110 19 C -0.097 4.097 20 C -0.147 4.147 21 C -0.175 4.175 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.022 0.978 25 H 0.271 0.729 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 -0.764 10.576 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.040 3.960 3 H 0.060 0.940 4 C -0.623 4.623 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.543 5.543 8 Si 0.887 3.113 9 H -0.215 1.215 10 H -0.208 1.208 11 H -0.213 1.213 12 C -0.082 4.082 13 C -0.017 4.017 14 C -0.130 4.130 15 C -0.133 4.133 16 C -0.077 4.077 17 Cl -0.061 7.061 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.183 4.183 21 C -0.212 4.212 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.657 -0.666 9.564 9.730 hybrid contribution -1.253 0.058 1.387 1.871 sum -2.910 -0.608 10.952 11.348 Atomic orbital electron populations 1.21729 0.98669 0.99419 0.98596 1.18463 0.91126 0.96239 0.90134 0.93972 1.21806 1.11380 1.17297 1.11832 0.93361 1.25718 0.94442 0.96249 1.01505 1.70815 1.43376 1.14966 1.25168 0.83693 0.76509 0.75444 0.75673 1.21520 1.20812 1.21303 1.20872 1.04458 0.89181 0.93697 1.19663 0.93285 0.94642 0.94120 1.21033 0.99511 1.00023 0.92389 1.20928 0.98931 0.94778 0.98634 1.20800 1.01745 0.96331 0.88790 1.98330 1.98126 1.72403 1.37230 1.21012 0.98870 1.00493 0.92505 1.21126 0.98861 0.94544 0.97031 1.23040 0.90239 1.02083 1.02979 1.22798 1.00568 0.97324 1.00461 0.93923 0.94295 0.95881 0.91697 0.85456 0.85646 0.85412 0.84653 0.86563 0.91518 0.90931 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.10 37.16 0.34 -2.32 16 2 C 0.06 1.38 2.35 -91.78 -0.22 1.16 16 3 H 0.04 1.08 5.90 -51.93 -0.31 0.77 16 4 C -0.59 -14.99 6.10 -34.44 -0.21 -15.20 16 5 H 0.05 1.26 7.82 -52.48 -0.41 0.85 16 6 C 0.03 0.69 4.71 -17.82 -0.08 0.60 16 7 N -0.91 -25.51 13.64 55.43 0.76 -24.76 16 8 Si 1.06 23.88 29.91 -169.99 -5.08 18.80 16 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 C -0.08 -1.66 1.66 -155.66 -0.26 -1.92 16 13 C -0.02 -0.31 5.11 -104.62 -0.53 -0.84 16 14 C -0.11 -1.78 9.22 -39.59 -0.37 -2.15 16 15 C -0.11 -1.66 9.83 -39.55 -0.39 -2.05 16 16 C -0.05 -0.75 6.32 -39.50 -0.25 -1.00 16 17 Cl -0.09 -1.18 28.96 -51.86 -1.50 -2.68 16 18 C -0.11 -1.73 9.83 -39.55 -0.39 -2.12 16 19 C -0.10 -1.75 9.49 -39.59 -0.38 -2.13 16 20 C -0.15 -3.03 9.43 -26.73 -0.25 -3.28 16 21 C -0.17 -3.27 8.65 -26.73 -0.23 -3.50 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.77 7.51 -51.93 -0.39 0.38 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.27 7.53 6.44 -40.82 -0.26 7.27 16 26 H 0.13 1.86 7.10 -52.48 -0.37 1.49 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.12 2.70 6.02 -51.94 -0.31 2.39 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.19 7.21 -51.93 -0.37 0.81 16 33 H 0.09 1.79 7.77 -51.93 -0.40 1.38 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -26.62 289.97 -8.84 -35.46 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.16 Total: 3.55 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -3.22 Total: -34.75 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.76 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.08 Total: 18.80 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.62 -8.84 -35.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.689 kcal (2) G-P(sol) polarization free energy of solvation -26.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds