Wall clock time and date at job start Mon Mar 30 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46675 * 2 1 4 4 C 1.50697 * 109.47353 * 239.99962 * 2 1 3 5 5 H 1.08004 * 120.00030 * 324.81233 * 4 2 1 6 6 C 1.37875 * 119.99930 * 144.80543 * 4 2 1 7 7 N 1.31511 * 120.00339 * 354.07932 * 6 4 2 8 8 Si 1.86803 * 119.99923 * 173.79900 * 6 4 2 9 9 H 1.48498 * 109.47171 * 60.00233 * 8 6 4 10 10 H 1.48498 * 109.47369 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46727 * 300.00318 * 8 6 4 12 12 C 1.52994 * 109.47162 * 119.99797 * 2 1 3 13 13 C 1.50708 * 115.55085 * 279.01092 * 12 2 1 14 14 C 1.38240 * 119.98451 * 113.18139 * 13 12 2 15 15 C 1.38219 * 120.01422 * 179.73026 * 14 13 12 16 16 C 1.38348 * 119.98050 * 0.54699 * 15 14 13 17 17 Cl 1.73602 * 120.00919 * 179.70994 * 16 15 14 18 18 C 1.38350 * 119.97608 * 359.72693 * 16 15 14 19 19 C 1.38209 * 119.99088 * 0.02562 * 18 16 15 20 20 C 1.53002 * 117.49731 * 133.30894 * 12 2 1 21 21 C 1.52998 * 117.49953 * 64.68284 * 12 2 1 22 22 H 1.09004 * 109.47296 * 63.39435 * 1 2 3 23 23 H 1.09006 * 109.47053 * 183.38933 * 1 2 3 24 24 H 1.08998 * 109.47405 * 303.39104 * 1 2 3 25 25 H 0.97002 * 119.99814 * 5.27303 * 7 6 4 26 26 H 1.08009 * 119.99332 * 0.02562 * 14 13 12 27 27 H 1.07992 * 120.00680 * 180.27368 * 15 14 13 28 28 H 1.08003 * 120.00890 * 180.02562 * 18 16 15 29 29 H 1.07998 * 119.99677 * 179.97438 * 19 18 16 30 30 H 1.08988 * 117.49958 * 359.97438 * 20 12 2 31 31 H 1.08998 * 117.49442 * 145.01990 * 20 12 2 32 32 H 1.08998 * 117.49795 * 214.97462 * 21 12 2 33 33 H 1.08996 * 117.49796 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4917 -1.5592 -1.6225 6 6 3.1822 -0.2767 -1.8557 7 7 3.7761 0.8243 -1.4500 8 14 3.9008 -1.2573 -3.2739 9 1 2.9050 -1.3413 -4.3724 10 1 5.1287 -0.5847 -3.7688 11 1 4.2401 -2.6258 -2.8077 12 6 2.0400 -0.7212 1.2492 13 6 2.0559 0.1000 2.5129 14 6 1.2100 -0.2231 3.5574 15 6 1.2280 0.5261 4.7188 16 6 2.0849 1.6065 4.8313 17 17 2.1027 2.5526 6.2867 18 6 2.9272 1.9328 3.7833 19 6 2.9119 1.1797 2.6245 20 6 3.1532 -1.7543 1.0635 21 6 1.7283 -2.2133 1.3802 22 1 -0.3634 0.4602 -0.9189 23 1 -0.3633 -1.0259 0.0608 24 1 -0.3634 0.5656 0.8580 25 1 3.4502 1.2897 -0.6638 26 1 0.5383 -1.0642 3.4679 27 1 0.5703 0.2709 5.5364 28 1 3.5966 2.7758 3.8707 29 1 3.5691 1.4346 1.8063 30 1 3.5218 -1.9205 0.0514 31 1 3.8973 -1.8401 1.8554 32 1 1.5352 -2.6012 2.3804 33 1 1.1603 -2.6813 0.5762 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:36 Heat of formation + Delta-G solvation = 14.266132 kcal Electronic energy + Delta-G solvation = -16098.066485 eV Core-core repulsion = 13535.132510 eV Total energy + Delta-G solvation = -2562.933975 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87126 -38.69710 -37.25438 -34.88547 -32.13402 -31.96294 -31.26393 -26.59678 -25.13946 -23.98793 -23.03973 -22.61644 -20.34471 -18.37311 -17.98942 -16.72180 -16.24435 -15.78791 -15.62705 -15.45908 -14.94717 -14.43582 -14.37371 -13.90729 -13.56890 -12.94573 -12.81122 -12.68005 -12.57684 -12.47770 -12.11499 -12.03425 -11.88117 -11.74171 -11.63228 -11.00262 -10.62673 -10.35207 -10.25021 -9.99749 -9.40037 -8.48223 -6.16737 0.18706 0.33257 1.13302 1.55244 1.60580 1.79053 2.59602 2.65870 3.11863 3.30347 3.82188 3.90674 3.95377 4.20108 4.28814 4.41494 4.53311 4.56940 4.72475 4.79792 4.84060 4.90315 4.98241 5.03556 5.20517 5.23910 5.27090 5.40403 5.52369 5.61513 5.70651 5.80522 5.85825 6.24327 6.33868 6.79165 7.59917 8.90784 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.005870 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.577377 B = 4768.706766 C = 5041.580680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 H 0.010 0.990 4 C -0.584 4.584 5 H 0.042 0.958 6 C -0.018 4.018 7 N -0.938 5.938 8 Si 1.096 2.904 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.271 1.271 12 C -0.084 4.084 13 C -0.036 4.036 14 C -0.108 4.108 15 C -0.104 4.104 16 C -0.050 4.050 17 Cl -0.069 7.069 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.164 4.164 21 C -0.149 4.149 22 H 0.031 0.969 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.260 0.740 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.141 0.859 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 -1.702 12.561 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.034 3.966 3 H 0.028 0.972 4 C -0.622 4.622 5 H 0.060 0.940 6 C -0.217 4.217 7 N -0.576 5.576 8 Si 0.920 3.080 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.196 1.196 12 C -0.084 4.084 13 C -0.037 4.037 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.076 4.076 17 Cl -0.040 7.040 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.200 4.200 21 C -0.186 4.186 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.159 0.841 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.926 -1.613 11.558 12.031 hybrid contribution -0.901 0.409 0.866 1.315 sum -3.827 -1.203 12.424 13.055 Atomic orbital electron populations 1.21617 0.96925 1.00269 0.98784 1.18420 0.92601 0.94558 0.90985 0.97193 1.22031 1.10909 1.16648 1.12586 0.93988 1.26801 0.95083 0.96360 1.03481 1.70905 1.44525 1.16473 1.25747 0.83193 0.75866 0.75040 0.73861 1.20174 1.21610 1.19588 1.20557 1.04336 0.89974 0.93551 1.19552 0.94923 0.94952 0.94236 1.21189 0.98844 1.00630 0.91908 1.21252 0.98504 0.93712 0.98807 1.20928 1.01069 0.96488 0.89154 1.98343 1.98027 1.71889 1.35729 1.21102 0.99299 1.00491 0.91996 1.20980 0.99367 0.95702 0.97369 1.22908 0.91602 1.03891 1.01647 1.22835 0.98223 0.95627 1.01870 0.94990 0.93133 0.94293 0.92808 0.83539 0.82502 0.84103 0.87459 0.89678 0.90491 0.87649 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.10 71.98 0.65 -4.25 16 2 C 0.05 2.52 2.35 -11.54 -0.03 2.49 16 3 H 0.01 0.53 5.90 -2.39 -0.01 0.52 16 4 C -0.58 -30.51 6.10 25.60 0.16 -30.35 16 5 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 6 C -0.02 -0.98 4.71 84.65 0.40 -0.58 16 7 N -0.94 -55.01 13.64 21.45 0.29 -54.72 16 8 Si 1.10 48.90 29.91 68.60 2.05 50.96 16 9 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 12 C -0.08 -3.39 1.66 -52.93 -0.09 -3.47 16 13 C -0.04 -1.31 5.11 -19.86 -0.10 -1.41 16 14 C -0.11 -3.12 9.22 22.27 0.21 -2.91 16 15 C -0.10 -2.65 9.83 22.29 0.22 -2.43 16 16 C -0.05 -1.36 6.32 22.32 0.14 -1.21 16 17 Cl -0.07 -1.60 28.96 -2.72 -0.08 -1.68 16 18 C -0.11 -3.36 9.83 22.29 0.22 -3.14 16 19 C -0.12 -4.22 9.49 22.26 0.21 -4.01 16 20 C -0.16 -6.78 9.43 30.60 0.29 -6.49 16 21 C -0.15 -5.30 8.65 30.60 0.26 -5.03 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.94 7.51 -2.38 -0.02 1.92 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.26 15.38 6.44 -92.71 -0.60 14.79 16 26 H 0.15 3.65 7.10 -2.91 -0.02 3.63 16 27 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 29 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.08 4.06 6.02 -2.39 -0.01 4.05 16 31 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.11 3.06 7.21 -2.39 -0.02 3.04 16 33 H 0.08 3.15 7.77 -2.39 -0.02 3.13 16 Total: -1.00 -58.17 289.97 6.08 -52.10 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.27 Total: 16.14 kcal Atomic # 6 Polarization: -65.35 SS G_CDS: 2.54 Total: -62.80 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.72 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.96 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -58.17 6.08 -52.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.363 kcal (2) G-P(sol) polarization free energy of solvation -58.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds