Wall clock time and date at job start Mon Mar 30 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47146 * 2 1 4 4 C 1.50697 * 109.47709 * 120.00112 * 2 1 3 5 5 H 1.07998 * 120.00199 * 95.28188 * 4 2 1 6 6 C 1.37878 * 119.99972 * 275.28575 * 4 2 1 7 7 N 1.31512 * 119.99919 * 356.72578 * 6 4 2 8 8 Si 1.86801 * 119.99767 * 176.72335 * 6 4 2 9 9 H 1.48494 * 109.47211 * 60.00029 * 8 6 4 10 10 H 1.48503 * 109.46794 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47057 * 299.99732 * 8 6 4 12 12 C 1.53006 * 109.47052 * 240.00685 * 2 1 3 13 13 C 1.50692 * 115.55303 * 149.04442 * 12 2 1 14 14 C 1.38268 * 119.99533 * 113.31941 * 13 12 2 15 15 C 1.38218 * 120.02474 * 179.76384 * 14 13 12 16 16 C 1.38241 * 120.01500 * 0.51624 * 15 14 13 17 17 C 1.38329 * 119.98411 * 359.74313 * 16 15 14 18 18 Cl 1.73605 * 120.01146 * 179.97438 * 17 16 15 19 19 C 1.38197 * 119.99191 * 293.60096 * 13 12 2 20 20 C 1.53001 * 117.49670 * 3.32938 * 12 2 1 21 21 C 1.53000 * 117.49407 * 294.70956 * 12 2 1 22 22 H 1.09003 * 109.46691 * 178.28377 * 1 2 3 23 23 H 1.09000 * 109.46957 * 298.27656 * 1 2 3 24 24 H 1.08993 * 109.47909 * 58.28249 * 1 2 3 25 25 H 0.96997 * 120.00663 * 6.35803 * 7 6 4 26 26 H 1.07994 * 119.98560 * 0.02562 * 14 13 12 27 27 H 1.08001 * 119.99463 * 180.27821 * 15 14 13 28 28 H 1.08000 * 120.00529 * 179.75869 * 16 15 14 29 29 H 1.07999 * 120.00735 * 359.95505 * 19 13 12 30 30 H 1.09003 * 117.50077 * 0.02562 * 20 12 2 31 31 H 1.08999 * 117.49193 * 145.02549 * 20 12 2 32 32 H 1.08999 * 117.49901 * 214.97813 * 21 12 2 33 33 H 1.09006 * 117.49880 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.2937 -1.7571 1.1808 6 6 2.1586 -0.0240 2.4195 7 7 1.9021 1.2650 2.4651 8 14 2.6938 -0.9252 3.9658 9 1 4.0368 -1.5214 3.7515 10 1 2.7513 0.0306 5.1008 11 1 1.7180 -2.0012 4.2744 12 6 2.0400 -0.7211 -1.2494 13 6 3.3559 -0.2276 -1.7932 14 6 4.4700 -1.0455 -1.7551 15 6 5.6761 -0.5952 -2.2582 16 6 5.7717 0.6772 -2.7899 17 6 4.6587 1.4980 -2.8233 18 17 4.7781 3.0963 -3.4903 19 6 3.4502 1.0447 -2.3244 20 6 0.9980 -1.2116 -2.2567 21 6 1.7405 -2.2164 -1.3736 22 1 -0.3633 -1.0273 -0.0308 23 1 -0.3633 0.4868 0.9050 24 1 -0.3635 0.5402 -0.8741 25 1 1.5364 1.7146 1.6873 26 1 4.3968 -2.0382 -1.3361 27 1 6.5449 -1.2362 -2.2323 28 1 6.7151 1.0303 -3.1794 29 1 2.5808 1.6849 -2.3506 30 1 -0.0507 -1.0201 -2.0296 31 1 1.2643 -1.1771 -3.3131 32 1 2.4951 -2.8430 -1.8490 33 1 1.1806 -2.6864 -0.5650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261135740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:38 Heat of formation + Delta-G solvation = 26.477848 kcal Electronic energy + Delta-G solvation = -16085.319957 eV Core-core repulsion = 13522.915522 eV Total energy + Delta-G solvation = -2562.404435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.52917 -37.34220 -36.07231 -33.28041 -30.63218 -30.25291 -29.44648 -25.09821 -23.69408 -22.58987 -21.64892 -21.06759 -18.64109 -16.88500 -16.24386 -15.32585 -14.99448 -14.76374 -13.87421 -13.67246 -13.43495 -13.19044 -13.07985 -12.08344 -11.65412 -11.44309 -11.27979 -11.23602 -11.15304 -10.82364 -10.77178 -10.46193 -10.39517 -10.14267 -9.93647 -9.55442 -9.27414 -8.57364 -8.42090 -8.32348 -8.05054 -6.29423 -4.01127 1.50412 1.61418 2.35456 3.44296 3.45283 3.64125 3.95672 4.43545 4.60304 4.99014 5.14685 5.34305 5.39201 5.54722 5.57607 5.62408 5.77681 5.89091 6.08913 6.14766 6.18705 6.44535 6.45646 6.51480 6.55393 6.67868 6.76134 6.88476 6.90689 7.09643 7.15751 7.35901 7.60704 8.25951 8.48086 8.91909 9.69667 11.08056 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.007361 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.439633 B = 3802.952986 C = 4082.231456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 H 0.036 0.964 4 C -0.583 4.583 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 1.062 2.938 9 H -0.289 1.289 10 H -0.284 1.284 11 H -0.289 1.289 12 C -0.060 4.060 13 C -0.001 4.001 14 C -0.105 4.105 15 C -0.111 4.111 16 C -0.127 4.127 17 C -0.033 4.033 18 Cl -0.085 7.085 19 C -0.102 4.102 20 C -0.188 4.188 21 C -0.164 4.164 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.021 0.979 25 H 0.270 0.730 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -2.755 -10.766 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.054 0.946 4 C -0.621 4.621 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.551 5.551 8 Si 0.891 3.109 9 H -0.216 1.216 10 H -0.209 1.209 11 H -0.215 1.215 12 C -0.060 4.060 13 C -0.002 4.002 14 C -0.123 4.123 15 C -0.129 4.129 16 C -0.146 4.146 17 C -0.059 4.059 18 Cl -0.056 7.056 19 C -0.121 4.121 20 C -0.225 4.225 21 C -0.201 4.201 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.607 -2.380 -9.223 10.581 hybrid contribution -0.343 -0.092 -1.593 1.632 sum 4.264 -2.472 -10.816 11.886 Atomic orbital electron populations 1.22035 0.99444 0.99272 0.98627 1.18419 0.91142 0.95864 0.90043 0.94564 1.21883 1.47690 0.98015 0.94490 0.93096 1.25728 0.95311 0.96003 1.01405 1.70775 1.41348 1.08808 1.34122 0.83635 0.76262 0.75053 0.75921 1.21562 1.20899 1.21529 1.20443 0.91441 0.96379 0.97783 1.19164 0.94694 0.92474 0.93849 1.21166 0.92100 1.00565 0.98464 1.21018 0.97846 0.95297 0.98748 1.20884 0.97279 0.94199 1.02260 1.20818 0.95773 0.86704 1.02623 1.98337 1.98447 1.24433 1.84401 1.20850 0.96362 0.96228 0.98659 1.23232 0.98285 1.05472 0.95524 1.22868 1.02882 0.92371 1.01935 0.94235 0.93555 0.96029 0.91909 0.85490 0.85568 0.85632 0.85296 0.88311 0.90278 0.90117 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 7.73 37.16 0.29 -2.70 16 2 C 0.06 1.52 2.04 -91.77 -0.19 1.33 16 3 H 0.04 0.96 6.41 -51.93 -0.33 0.63 16 4 C -0.58 -15.54 8.03 -34.44 -0.28 -15.82 16 5 H 0.05 1.35 7.01 -52.49 -0.37 0.98 16 6 C 0.02 0.54 5.46 -17.82 -0.10 0.45 16 7 N -0.91 -27.21 13.61 55.43 0.75 -26.45 16 8 Si 1.06 24.99 29.90 -169.99 -5.08 19.91 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 C -0.06 -1.20 1.76 -155.66 -0.27 -1.47 16 13 C 0.00 -0.03 5.08 -104.63 -0.53 -0.56 16 14 C -0.10 -1.79 9.22 -39.58 -0.37 -2.16 16 15 C -0.11 -1.63 10.05 -39.59 -0.40 -2.03 16 16 C -0.13 -1.89 9.83 -39.55 -0.39 -2.28 16 17 C -0.03 -0.54 6.32 -39.50 -0.25 -0.79 16 18 Cl -0.08 -1.25 28.96 -51.86 -1.50 -2.75 16 19 C -0.10 -1.86 9.24 -39.55 -0.37 -2.22 16 20 C -0.19 -3.22 9.21 -26.73 -0.25 -3.46 16 21 C -0.16 -2.92 8.35 -26.73 -0.22 -3.15 16 22 H 0.04 0.82 7.05 -51.93 -0.37 0.45 16 23 H 0.05 1.10 8.12 -51.93 -0.42 0.68 16 24 H 0.02 0.41 7.36 -51.93 -0.38 0.03 16 25 H 0.27 7.98 6.67 -40.82 -0.27 7.71 16 26 H 0.13 2.06 7.09 -52.49 -0.37 1.69 16 27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.10 1.66 5.82 -51.93 -0.30 1.36 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.29 7.20 -51.93 -0.37 0.91 16 33 H 0.10 1.85 7.57 -51.93 -0.39 1.46 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -28.74 288.72 -8.87 -37.61 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.07 Total: 2.20 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: -3.32 Total: -34.86 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.75 Total: -26.45 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.74 -8.87 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.089 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds