Wall clock time and date at job start Mon Mar 30 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47146 * 2 1 4 4 C 1.50697 * 109.47709 * 120.00112 * 2 1 3 5 5 H 1.07998 * 120.00199 * 95.28188 * 4 2 1 6 6 C 1.37878 * 119.99972 * 275.28575 * 4 2 1 7 7 N 1.31512 * 119.99919 * 356.72578 * 6 4 2 8 8 Si 1.86801 * 119.99767 * 176.72335 * 6 4 2 9 9 H 1.48494 * 109.47211 * 60.00029 * 8 6 4 10 10 H 1.48503 * 109.46794 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47057 * 299.99732 * 8 6 4 12 12 C 1.53006 * 109.47052 * 240.00685 * 2 1 3 13 13 C 1.50692 * 115.55303 * 149.04442 * 12 2 1 14 14 C 1.38268 * 119.99533 * 113.31941 * 13 12 2 15 15 C 1.38218 * 120.02474 * 179.76384 * 14 13 12 16 16 C 1.38241 * 120.01500 * 0.51624 * 15 14 13 17 17 C 1.38329 * 119.98411 * 359.74313 * 16 15 14 18 18 Cl 1.73605 * 120.01146 * 179.97438 * 17 16 15 19 19 C 1.38197 * 119.99191 * 293.60096 * 13 12 2 20 20 C 1.53001 * 117.49670 * 3.32938 * 12 2 1 21 21 C 1.53000 * 117.49407 * 294.70956 * 12 2 1 22 22 H 1.09003 * 109.46691 * 178.28377 * 1 2 3 23 23 H 1.09000 * 109.46957 * 298.27656 * 1 2 3 24 24 H 1.08993 * 109.47909 * 58.28249 * 1 2 3 25 25 H 0.96997 * 120.00663 * 6.35803 * 7 6 4 26 26 H 1.07994 * 119.98560 * 0.02562 * 14 13 12 27 27 H 1.08001 * 119.99463 * 180.27821 * 15 14 13 28 28 H 1.08000 * 120.00529 * 179.75869 * 16 15 14 29 29 H 1.07999 * 120.00735 * 359.95505 * 19 13 12 30 30 H 1.09003 * 117.50077 * 0.02562 * 20 12 2 31 31 H 1.08999 * 117.49193 * 145.02549 * 20 12 2 32 32 H 1.08999 * 117.49901 * 214.97813 * 21 12 2 33 33 H 1.09006 * 117.49880 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.2937 -1.7571 1.1808 6 6 2.1586 -0.0240 2.4195 7 7 1.9021 1.2650 2.4651 8 14 2.6938 -0.9252 3.9658 9 1 4.0368 -1.5214 3.7515 10 1 2.7513 0.0306 5.1008 11 1 1.7180 -2.0012 4.2744 12 6 2.0400 -0.7211 -1.2494 13 6 3.3559 -0.2276 -1.7932 14 6 4.4700 -1.0455 -1.7551 15 6 5.6761 -0.5952 -2.2582 16 6 5.7717 0.6772 -2.7899 17 6 4.6587 1.4980 -2.8233 18 17 4.7781 3.0963 -3.4903 19 6 3.4502 1.0447 -2.3244 20 6 0.9980 -1.2116 -2.2567 21 6 1.7405 -2.2164 -1.3736 22 1 -0.3633 -1.0273 -0.0308 23 1 -0.3633 0.4868 0.9050 24 1 -0.3635 0.5402 -0.8741 25 1 1.5364 1.7146 1.6873 26 1 4.3968 -2.0382 -1.3361 27 1 6.5449 -1.2362 -2.2323 28 1 6.7151 1.0303 -3.1794 29 1 2.5808 1.6849 -2.3506 30 1 -0.0507 -1.0201 -2.0296 31 1 1.2643 -1.1771 -3.3131 32 1 2.4951 -2.8430 -1.8490 33 1 1.1806 -2.6864 -0.5650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261135740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:38 Heat of formation + Delta-G solvation = 13.374490 kcal Electronic energy + Delta-G solvation = -16085.888161 eV Core-core repulsion = 13522.915522 eV Total energy + Delta-G solvation = -2562.972640 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89187 -38.76168 -37.31476 -35.23533 -31.89204 -31.73491 -31.12080 -27.03982 -25.28383 -23.90910 -23.20407 -22.48035 -20.25527 -18.47790 -17.92298 -16.80226 -16.28508 -16.09591 -15.63588 -15.22348 -15.10495 -14.55858 -14.40417 -13.74275 -13.33469 -13.03751 -12.90960 -12.59185 -12.56271 -12.45007 -12.12747 -12.07831 -11.96967 -11.95896 -11.49534 -11.13767 -10.90538 -10.45567 -10.21051 -9.76708 -9.49454 -8.48568 -6.19867 0.23342 0.35414 1.12379 1.53333 1.60658 1.78643 2.60209 2.68078 3.05873 3.29956 3.68085 3.94731 4.07529 4.15071 4.22842 4.25455 4.45421 4.52583 4.68115 4.74866 4.78093 4.85967 4.92629 5.07435 5.10269 5.23425 5.30799 5.36855 5.38460 5.49940 5.69233 5.73173 5.92707 6.20438 6.33069 6.75471 7.58575 8.88691 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.007361 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.439633 B = 3802.952986 C = 4082.231456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.062 3.938 3 H -0.001 1.001 4 C -0.580 4.580 5 H 0.051 0.949 6 C -0.035 4.035 7 N -0.947 5.947 8 Si 1.104 2.896 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.270 1.270 12 C -0.083 4.083 13 C -0.025 4.025 14 C -0.119 4.119 15 C -0.101 4.101 16 C -0.124 4.124 17 C -0.042 4.042 18 Cl -0.075 7.075 19 C -0.123 4.123 20 C -0.169 4.169 21 C -0.156 4.156 22 H 0.050 0.950 23 H 0.017 0.983 24 H 0.043 0.957 25 H 0.256 0.744 26 H 0.133 0.867 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 -4.351 -11.860 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.043 3.957 3 H 0.018 0.982 4 C -0.618 4.618 5 H 0.069 0.931 6 C -0.232 4.232 7 N -0.585 5.585 8 Si 0.928 3.072 9 H -0.198 1.198 10 H -0.217 1.217 11 H -0.196 1.196 12 C -0.083 4.083 13 C -0.025 4.025 14 C -0.137 4.137 15 C -0.119 4.119 16 C -0.142 4.142 17 C -0.068 4.068 18 Cl -0.046 7.046 19 C -0.142 4.142 20 C -0.205 4.205 21 C -0.193 4.193 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.151 0.849 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.134 0.866 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.960 -3.992 -10.342 12.586 hybrid contribution -0.749 0.431 -1.330 1.586 sum 5.211 -3.561 -11.672 13.269 Atomic orbital electron populations 1.21878 0.98356 0.99852 0.98202 1.18302 0.91955 0.94057 0.91386 0.98246 1.22243 1.46088 0.98017 0.95458 0.93075 1.27030 0.95465 0.96021 1.04726 1.70890 1.43885 1.10046 1.33718 0.83093 0.77133 0.74427 0.72588 1.19833 1.21729 1.19576 1.20208 0.93212 0.97496 0.97376 1.19214 0.94908 0.93232 0.95152 1.21367 0.92485 1.00809 0.99023 1.21428 0.98096 0.95550 0.96845 1.21285 0.97783 0.93928 1.01203 1.20983 0.95776 0.87507 1.02537 1.98336 1.98389 1.23713 1.84153 1.20852 0.96949 0.96305 1.00059 1.23259 0.97647 1.03573 0.96070 1.22889 1.03175 0.91414 1.01774 0.93127 0.96397 0.93840 0.93362 0.84894 0.81859 0.82674 0.86596 0.88171 0.88309 0.87883 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 7.73 71.98 0.56 -5.02 16 2 C 0.06 2.99 2.04 -11.54 -0.02 2.97 16 3 H 0.00 -0.04 6.41 -2.39 -0.02 -0.05 16 4 C -0.58 -31.25 8.03 25.60 0.21 -31.05 16 5 H 0.05 2.70 7.01 -2.91 -0.02 2.68 16 6 C -0.04 -2.00 5.46 84.66 0.46 -1.54 16 7 N -0.95 -58.23 13.61 21.45 0.29 -57.93 16 8 Si 1.10 50.33 29.90 68.60 2.05 52.38 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 12 C -0.08 -3.25 1.76 -52.93 -0.09 -3.35 16 13 C -0.02 -0.92 5.08 -19.87 -0.10 -1.02 16 14 C -0.12 -3.83 9.22 22.27 0.21 -3.63 16 15 C -0.10 -2.66 10.05 22.27 0.22 -2.44 16 16 C -0.12 -3.31 9.83 22.29 0.22 -3.10 16 17 C -0.04 -1.31 6.32 22.32 0.14 -1.17 16 18 Cl -0.07 -2.12 28.96 -2.72 -0.08 -2.20 16 19 C -0.12 -4.47 9.24 22.29 0.21 -4.26 16 20 C -0.17 -5.48 9.21 30.60 0.28 -5.20 16 21 C -0.16 -5.30 8.35 30.59 0.26 -5.04 16 22 H 0.05 2.09 7.05 -2.39 -0.02 2.08 16 23 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 24 H 0.04 1.70 7.36 -2.39 -0.02 1.68 16 25 H 0.26 15.96 6.67 -92.71 -0.62 15.35 16 26 H 0.13 4.02 7.09 -2.91 -0.02 4.00 16 27 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.10 3.20 5.82 -2.39 -0.01 3.18 16 31 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.10 3.01 7.20 -2.39 -0.02 3.00 16 33 H 0.08 3.11 7.57 -2.38 -0.02 3.09 16 Total: -1.00 -62.98 288.72 6.06 -56.92 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.25 Total: 14.69 kcal Atomic # 6 Polarization: -66.39 SS G_CDS: 2.54 Total: -63.85 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.29 Total: -57.93 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Total: -62.98 6.06 -56.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.293 kcal (2) G-P(sol) polarization free energy of solvation -62.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds