Wall clock time and date at job start Mon Mar 30 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99463 * 2 1 4 4 H 1.48507 * 109.46758 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99352 * 3 2 1 6 6 H 1.48497 * 109.47518 * 60.00015 * 3 2 1 7 7 C 1.37873 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46875 * 179.97438 * 9 7 2 11 11 C 1.33390 * 125.20683 * 89.99782 * 10 9 7 12 12 C 1.38422 * 114.91870 * 180.02562 * 11 10 9 13 13 C 1.33383 * 114.92604 * 0.02562 * 12 11 10 14 14 C 1.50703 * 125.20681 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47254 * 240.01498 * 14 13 12 16 16 C 1.53002 * 109.47238 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47089 * 59.99599 * 16 15 14 18 18 C 1.52991 * 109.47408 * 300.00297 * 17 16 15 19 19 C 1.53000 * 109.47060 * 120.01105 * 14 13 12 20 20 S 1.75889 * 109.59330 * 359.97438 * 13 12 11 21 21 H 0.96995 * 120.00593 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47419 * 59.99632 * 9 7 2 23 23 H 1.09000 * 109.46561 * 299.99048 * 9 7 2 24 24 H 1.07999 * 122.53431 * 0.04065 * 11 10 9 25 25 H 1.08006 * 122.53685 * 180.02562 * 12 11 10 26 26 H 1.08999 * 109.46521 * 0.02562 * 14 13 12 27 27 H 1.09009 * 109.47332 * 299.99657 * 15 14 13 28 28 H 1.09003 * 109.47362 * 59.99787 * 15 14 13 29 29 H 1.08996 * 109.47012 * 300.00035 * 16 15 14 30 30 H 1.08998 * 109.47158 * 180.02562 * 16 15 14 31 31 H 1.08998 * 109.46928 * 180.02562 * 17 16 15 32 32 H 1.09009 * 109.47008 * 60.00659 * 17 16 15 33 33 H 1.08999 * 109.47404 * 300.00302 * 18 17 16 34 34 H 1.09003 * 109.47362 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47475 * 300.00241 * 19 14 13 36 36 H 1.09006 * 109.46760 * 60.00196 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.7303 -4.2290 1.0904 12 6 3.6158 -5.2638 0.8432 13 6 3.8356 -5.5193 -0.4473 14 6 4.7535 -6.5909 -0.9768 15 6 5.8487 -5.9483 -1.8302 16 6 6.7802 -7.0362 -2.3683 17 6 5.9771 -8.0181 -3.2238 18 6 4.8819 -8.6606 -2.3704 19 6 3.9508 -7.5732 -1.8321 20 16 2.8901 -4.4144 -1.4368 21 1 -0.4851 0.8399 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.4639 -3.9185 2.0899 25 1 4.0927 -5.8220 1.6354 26 1 5.2088 -7.1240 -0.1422 27 1 5.3931 -5.4152 -2.6648 28 1 6.4206 -5.2485 -1.2208 29 1 7.2358 -7.5697 -1.5340 30 1 7.5607 -6.5784 -2.9759 31 1 6.6407 -8.7933 -3.6067 32 1 5.5215 -7.4846 -4.0582 33 1 5.3374 -9.1941 -1.5361 34 1 4.3100 -9.3605 -2.9798 35 1 3.1705 -8.0310 -1.2241 36 1 3.4952 -7.0400 -2.6667 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:36 Heat of formation + Delta-G solvation = -12.831894 kcal Electronic energy + Delta-G solvation = -15686.165927 eV Core-core repulsion = 13259.933694 eV Total energy + Delta-G solvation = -2426.232233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.80762 -36.90530 -33.45294 -31.93782 -30.77050 -29.64875 -26.20313 -23.86482 -22.56389 -21.94071 -21.46337 -19.78891 -18.06955 -16.43005 -16.15081 -15.12897 -14.80017 -14.32497 -14.20478 -14.06710 -13.44386 -13.05415 -12.46602 -12.29886 -12.21676 -12.09329 -11.69500 -11.46208 -11.23205 -11.16494 -11.01019 -10.68787 -10.64489 -10.41870 -10.14812 -10.13109 -9.92750 -9.71674 -9.44365 -8.45976 -7.72895 -7.57305 -6.07761 -4.12283 1.81195 2.38314 2.83890 3.28179 3.35468 3.40544 3.53668 4.42148 4.63643 4.72064 4.76986 5.15531 5.24644 5.27245 5.34696 5.47331 5.48778 5.52651 5.62155 5.84093 5.90507 5.96238 6.04925 6.09441 6.13974 6.15390 6.33820 6.35799 6.45911 6.48785 6.82339 7.09737 7.22578 7.44285 7.63358 7.87440 8.24153 8.92110 9.51881 11.01861 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.004825 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.622893 B = 5801.847447 C = 6051.503460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.075 3.925 10 C -0.097 4.097 11 C -0.185 4.185 12 C -0.121 4.121 13 C -0.211 4.211 14 C -0.005 4.005 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.113 4.113 20 S 0.072 5.928 21 H 0.262 0.738 22 H 0.031 0.969 23 H 0.041 0.959 24 H 0.131 0.869 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.098 -15.213 -3.710 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.037 3.963 10 C -0.214 4.214 11 C -0.212 4.212 12 C -0.153 4.153 13 C -0.328 4.328 14 C -0.025 4.025 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.151 4.151 20 S 0.335 5.665 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.761 -14.885 -5.250 18.558 hybrid contribution 0.558 0.846 1.644 1.932 sum 10.320 -14.038 -3.606 17.793 Atomic orbital electron populations 1.69959 1.06043 1.26865 1.50417 1.25003 0.94903 0.99306 0.95034 0.86450 0.80168 0.83291 0.77676 1.19597 1.20853 1.20861 1.21101 0.93190 0.89592 1.51197 0.92236 1.17999 0.91617 0.88082 0.98650 1.25353 1.02151 1.00452 0.93456 1.19947 1.02299 0.99474 0.99524 1.19959 1.00561 0.99423 0.95313 1.24190 1.07392 1.04471 0.96707 1.19562 0.93113 0.92398 0.97454 1.21655 0.96485 0.97559 0.99502 1.21535 0.97772 0.96881 0.99366 1.21552 0.97462 0.98424 0.98379 1.21526 0.97011 0.97640 0.99379 1.21640 0.97734 0.96304 0.99440 1.84016 1.41833 1.28862 1.11769 0.92788 0.95127 0.94134 0.85117 0.85852 0.90409 0.91645 0.91680 0.92133 0.92091 0.92349 0.91958 0.92127 0.92117 0.91757 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.49 9.09 -34.44 -0.31 -14.81 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.08 1.97 5.47 -29.03 -0.16 1.82 16 10 C -0.10 -2.16 5.70 -36.00 -0.21 -2.37 16 11 C -0.18 -3.73 10.05 -41.21 -0.41 -4.15 16 12 C -0.12 -2.11 10.01 -41.21 -0.41 -2.52 16 13 C -0.21 -3.49 5.09 -36.00 -0.18 -3.67 16 14 C 0.00 -0.06 2.57 -91.77 -0.24 -0.30 16 15 C -0.11 -1.40 5.13 -26.74 -0.14 -1.54 16 16 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 17 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 18 C -0.12 -1.12 5.92 -26.76 -0.16 -1.28 16 19 C -0.11 -1.34 5.12 -26.76 -0.14 -1.47 16 20 S 0.07 1.37 22.89 -107.50 -2.46 -1.09 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 25 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 27 H 0.06 0.87 8.00 -51.92 -0.42 0.45 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -29.08 306.17 -10.77 -39.84 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.87 Total: -3.02 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -2.77 Total: -31.29 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.46 Total: -1.09 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.08 -10.77 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.012 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds