Wall clock time and date at job start Mon Mar 30 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99463 * 2 1 4 4 H 1.48507 * 109.46758 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99352 * 3 2 1 6 6 H 1.48497 * 109.47518 * 60.00015 * 3 2 1 7 7 C 1.37873 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46875 * 179.97438 * 9 7 2 11 11 C 1.33390 * 125.20683 * 89.99782 * 10 9 7 12 12 C 1.38422 * 114.91870 * 180.02562 * 11 10 9 13 13 C 1.33383 * 114.92604 * 0.02562 * 12 11 10 14 14 C 1.50703 * 125.20681 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47254 * 240.01498 * 14 13 12 16 16 C 1.53002 * 109.47238 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47089 * 59.99599 * 16 15 14 18 18 C 1.52991 * 109.47408 * 300.00297 * 17 16 15 19 19 C 1.53000 * 109.47060 * 120.01105 * 14 13 12 20 20 S 1.75889 * 109.59330 * 359.97438 * 13 12 11 21 21 H 0.96995 * 120.00593 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47419 * 59.99632 * 9 7 2 23 23 H 1.09000 * 109.46561 * 299.99048 * 9 7 2 24 24 H 1.07999 * 122.53431 * 0.04065 * 11 10 9 25 25 H 1.08006 * 122.53685 * 180.02562 * 12 11 10 26 26 H 1.08999 * 109.46521 * 0.02562 * 14 13 12 27 27 H 1.09009 * 109.47332 * 299.99657 * 15 14 13 28 28 H 1.09003 * 109.47362 * 59.99787 * 15 14 13 29 29 H 1.08996 * 109.47012 * 300.00035 * 16 15 14 30 30 H 1.08998 * 109.47158 * 180.02562 * 16 15 14 31 31 H 1.08998 * 109.46928 * 180.02562 * 17 16 15 32 32 H 1.09009 * 109.47008 * 60.00659 * 17 16 15 33 33 H 1.08999 * 109.47404 * 300.00302 * 18 17 16 34 34 H 1.09003 * 109.47362 * 180.02562 * 18 17 16 35 35 H 1.08998 * 109.47475 * 300.00241 * 19 14 13 36 36 H 1.09006 * 109.46760 * 60.00196 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.7303 -4.2290 1.0904 12 6 3.6158 -5.2638 0.8432 13 6 3.8356 -5.5193 -0.4473 14 6 4.7535 -6.5909 -0.9768 15 6 5.8487 -5.9483 -1.8302 16 6 6.7802 -7.0362 -2.3683 17 6 5.9771 -8.0181 -3.2238 18 6 4.8819 -8.6606 -2.3704 19 6 3.9508 -7.5732 -1.8321 20 16 2.8901 -4.4144 -1.4368 21 1 -0.4851 0.8399 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.4639 -3.9185 2.0899 25 1 4.0927 -5.8220 1.6354 26 1 5.2088 -7.1240 -0.1422 27 1 5.3931 -5.4152 -2.6648 28 1 6.4206 -5.2485 -1.2208 29 1 7.2358 -7.5697 -1.5340 30 1 7.5607 -6.5784 -2.9759 31 1 6.6407 -8.7933 -3.6067 32 1 5.5215 -7.4846 -4.0582 33 1 5.3374 -9.1941 -1.5361 34 1 4.3100 -9.3605 -2.9798 35 1 3.1705 -8.0310 -1.2241 36 1 3.4952 -7.0400 -2.6667 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:35 Heat of formation + Delta-G solvation = -26.100457 kcal Electronic energy + Delta-G solvation = -15686.741295 eV Core-core repulsion = 13259.933694 eV Total energy + Delta-G solvation = -2426.807601 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84309 -38.31490 -35.43908 -33.35298 -31.61599 -31.27647 -27.86806 -25.57895 -23.52357 -23.41011 -22.70393 -20.72200 -19.52341 -18.58087 -17.61899 -16.59535 -16.29211 -15.69532 -15.08017 -14.95725 -14.67943 -14.65708 -14.11297 -13.96350 -13.68157 -13.06467 -12.95956 -12.91834 -12.83424 -12.56033 -12.42184 -12.12484 -12.00784 -11.75458 -11.56615 -11.53184 -11.23622 -11.03998 -10.97600 -10.64883 -9.26753 -9.16780 -8.24325 -6.39195 0.28244 0.85473 1.30175 1.37684 1.37861 1.51783 1.98941 2.38575 3.06092 3.66292 3.85042 3.92651 4.25927 4.33715 4.39274 4.39858 4.57934 4.64468 4.66255 4.73826 4.77784 4.83428 5.01595 5.12001 5.18577 5.23088 5.24852 5.27789 5.28402 5.38537 5.47016 5.47194 5.59758 5.63463 5.70039 5.83535 6.08834 6.71458 7.29729 8.84600 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.004825 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.622893 B = 5801.847447 C = 6051.503460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.087 3.913 10 C -0.151 4.151 11 C -0.171 4.171 12 C -0.135 4.135 13 C -0.181 4.181 14 C -0.005 4.005 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.113 4.113 20 S 0.067 5.933 21 H 0.267 0.733 22 H 0.003 0.997 23 H 0.015 0.985 24 H 0.131 0.869 25 H 0.160 0.840 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 -16.680 -3.726 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.048 3.952 10 C -0.269 4.269 11 C -0.200 4.200 12 C -0.165 4.165 13 C -0.298 4.298 14 C -0.026 4.026 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.151 4.151 20 S 0.331 5.669 21 H 0.076 0.924 22 H 0.021 0.979 23 H 0.033 0.967 24 H 0.149 0.851 25 H 0.177 0.823 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.246 -16.358 -5.269 21.102 hybrid contribution -0.199 1.202 1.640 2.043 sum 12.047 -15.156 -3.629 19.698 Atomic orbital electron populations 1.70074 1.07655 1.28108 1.51013 1.25923 0.95797 1.03117 0.94313 0.85360 0.78847 0.78507 0.78144 1.19019 1.19965 1.19861 1.21375 0.93051 0.91020 1.51442 0.92821 1.17618 0.91877 0.89602 0.96071 1.24970 1.04253 1.01649 0.95983 1.20191 1.01568 0.99319 0.98929 1.20180 1.00552 0.99172 0.96599 1.24740 1.05644 1.03396 0.95994 1.19765 0.92721 0.91560 0.98538 1.21648 0.96570 0.98290 0.98741 1.21512 0.97354 0.96199 0.99976 1.21570 0.97589 0.98699 0.97983 1.21505 0.96675 0.96896 0.99971 1.21630 0.98105 0.96628 0.98723 1.83931 1.42384 1.29532 1.11073 0.92370 0.97881 0.96712 0.85131 0.82282 0.88162 0.93243 0.92345 0.90787 0.91329 0.90467 0.92803 0.90791 0.91124 0.91912 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -31.10 9.09 25.60 0.23 -30.87 16 8 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.09 4.83 5.47 29.10 0.16 4.99 16 10 C -0.15 -7.02 5.70 24.59 0.14 -6.88 16 11 C -0.17 -6.94 10.05 21.22 0.21 -6.73 16 12 C -0.14 -4.43 10.01 21.21 0.21 -4.22 16 13 C -0.18 -5.69 5.09 24.59 0.13 -5.56 16 14 C -0.01 -0.13 2.57 -11.54 -0.03 -0.16 16 15 C -0.11 -2.55 5.13 30.59 0.16 -2.40 16 16 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 17 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 18 C -0.11 -1.76 5.92 30.57 0.18 -1.58 16 19 C -0.11 -2.39 5.12 30.58 0.16 -2.24 16 20 S 0.07 2.61 22.89 -56.49 -1.29 1.32 16 21 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 22 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 23 H 0.01 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.13 5.17 8.06 -2.91 -0.02 5.14 16 25 H 0.16 4.09 8.06 -2.91 -0.02 4.06 16 26 H 0.10 1.98 8.08 -2.39 -0.02 1.97 16 27 H 0.05 1.25 8.00 -2.38 -0.02 1.23 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.21 8.00 -2.38 -0.02 1.19 16 Total: -1.00 -64.31 306.17 4.42 -59.89 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.03 Total: 6.18 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 2.37 Total: -58.09 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.29 Total: 1.32 kcal Total: -64.31 4.42 -59.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.793 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds