Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47461 * 2 1 4 4 C 1.50700 * 109.46925 * 120.00513 * 2 1 3 5 5 H 1.07998 * 120.00159 * 120.00294 * 4 2 1 6 6 C 1.37880 * 119.99962 * 299.72047 * 4 2 1 7 7 N 1.31512 * 119.99713 * 180.27744 * 6 4 2 8 8 Si 1.86797 * 119.99879 * 0.28068 * 6 4 2 9 9 H 1.48500 * 109.47503 * 89.99701 * 8 6 4 10 10 H 1.48498 * 109.46884 * 209.99811 * 8 6 4 11 11 H 1.48509 * 109.47117 * 329.99466 * 8 6 4 12 12 C 1.53005 * 109.46855 * 240.00402 * 2 1 3 13 13 C 1.50697 * 115.54968 * 274.32843 * 12 2 1 14 14 C 1.38236 * 120.00866 * 76.38575 * 13 12 2 15 15 C 1.38221 * 120.01805 * 179.97438 * 14 13 12 16 16 C 1.38258 * 120.02376 * 0.04659 * 15 14 13 17 17 C 1.38193 * 120.01755 * 359.97438 * 16 15 14 18 18 C 1.38337 * 120.01064 * 256.11878 * 13 12 2 19 19 Cl 1.73603 * 120.00743 * 359.97071 * 18 13 12 20 20 C 1.53001 * 117.49684 * 128.62881 * 12 2 1 21 21 C 1.53000 * 117.50060 * 60.00245 * 12 2 1 22 22 H 1.09006 * 109.46916 * 59.99630 * 1 2 3 23 23 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47360 * 299.99643 * 1 2 3 25 25 H 0.97003 * 119.99807 * 180.02562 * 7 6 4 26 26 H 1.08007 * 119.98793 * 0.02562 * 14 13 12 27 27 H 1.07996 * 119.98829 * 180.02562 * 15 14 13 28 28 H 1.07998 * 119.99626 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.01406 * 180.02562 * 17 16 15 30 30 H 1.08998 * 117.50140 * 359.97438 * 20 12 2 31 31 H 1.08994 * 117.49949 * 145.01977 * 20 12 2 32 32 H 1.09000 * 117.49617 * 214.97436 * 21 12 2 33 33 H 1.09000 * 117.49863 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.7039 -0.2362 2.4827 7 7 2.1467 -0.8531 3.5564 8 14 0.6299 1.2825 2.6542 9 1 -0.7975 0.8763 2.7063 10 1 0.9858 2.0018 3.9036 11 1 0.8478 2.1770 1.4889 12 6 2.0399 -0.7212 -1.2494 13 6 2.1598 -2.2188 -1.1319 14 6 1.0276 -3.0098 -1.1913 15 6 1.1374 -4.3834 -1.0841 16 6 2.3794 -4.9672 -0.9165 17 6 3.5120 -4.1776 -0.8565 18 6 3.4033 -2.8028 -0.9702 19 17 4.8264 -1.8107 -0.9033 20 6 3.0741 0.0052 -2.1117 21 6 1.6356 -0.1494 -2.6097 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.9154 -0.5197 4.4375 26 1 0.0571 -2.5543 -1.3223 27 1 0.2526 -5.0009 -1.1309 28 1 2.4647 -6.0405 -0.8324 29 1 4.4822 -4.6337 -0.7260 30 1 3.3909 0.9970 -1.7892 31 1 3.8415 -0.6000 -2.5941 32 1 1.4568 -0.8564 -3.4198 33 1 1.0060 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261164961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = 45.848883 kcal Electronic energy + Delta-G solvation = -16571.273916 eV Core-core repulsion = 14009.709471 eV Total energy + Delta-G solvation = -2561.564444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.45709 -36.90482 -35.76687 -33.11391 -30.72326 -30.27369 -30.00866 -25.17588 -23.31471 -22.47499 -21.57705 -21.27743 -18.53887 -16.82308 -16.13670 -15.37667 -14.76929 -14.54249 -14.15211 -13.79883 -13.35705 -12.74692 -12.69559 -12.34245 -12.10936 -11.60727 -11.43235 -11.28989 -10.92455 -10.83612 -10.70127 -10.58127 -10.05316 -9.93268 -9.47888 -9.24294 -9.11480 -8.82854 -8.43233 -8.31687 -7.97094 -5.96513 -3.93617 1.70660 1.81935 2.81167 3.31062 3.41644 3.43668 4.14960 4.41761 4.48326 5.09594 5.29930 5.33886 5.36665 5.51172 5.60180 5.69398 5.88713 6.02265 6.11449 6.19990 6.28033 6.34091 6.45560 6.48323 6.66265 6.69087 6.73167 6.84660 6.97398 7.02176 7.08813 7.31873 7.53017 7.84027 8.64029 9.12246 9.65747 11.16596 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.009799 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.724017 B = 2856.778898 C = 2966.564416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 H 0.031 0.969 4 C -0.499 4.499 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.882 3.118 9 H -0.282 1.282 10 H -0.300 1.300 11 H -0.268 1.268 12 C -0.056 4.056 13 C 0.010 3.990 14 C -0.098 4.098 15 C -0.120 4.120 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.021 4.021 19 Cl -0.066 7.066 20 C -0.168 4.168 21 C -0.186 4.186 22 H 0.029 0.971 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.261 0.739 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -4.022 -11.525 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.102 0.898 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.228 1.228 11 H -0.194 1.194 12 C -0.056 4.056 13 C 0.010 3.990 14 C -0.116 4.116 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.135 4.135 18 C -0.047 4.047 19 Cl -0.037 7.037 20 C -0.205 4.205 21 C -0.223 4.223 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.066 -3.930 -11.320 11.983 hybrid contribution -0.542 0.880 0.502 1.149 sum -0.608 -3.050 -10.818 11.257 Atomic orbital electron populations 1.22197 0.99267 1.00624 0.98309 1.18731 0.91267 0.95352 0.91633 0.95147 1.21088 1.31296 1.13332 0.88011 0.89820 1.24974 0.95829 0.96344 0.96020 1.69898 1.45939 1.40410 0.97766 0.86943 0.80693 0.84309 0.76688 1.20909 1.22813 1.19369 1.20220 1.03043 0.89703 0.92643 1.18784 0.90867 0.93986 0.95389 1.20887 0.97973 0.92999 0.99774 1.21083 0.97330 0.94896 1.00471 1.20890 0.92244 0.99308 1.01937 1.20911 0.99337 0.91646 1.01561 1.20722 0.88088 0.91117 1.04821 1.98328 1.38601 1.70320 1.96457 1.23227 0.91868 1.01905 1.03500 1.23082 0.98960 1.02879 0.97380 0.95239 0.92929 0.94374 0.92934 0.85620 0.86212 0.86045 0.85765 0.89028 0.88820 0.89767 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.51 37.15 0.32 -2.82 16 2 C 0.05 1.13 1.96 -91.77 -0.18 0.95 16 3 H 0.03 0.73 6.95 -51.93 -0.36 0.37 16 4 C -0.50 -13.67 8.64 -34.44 -0.30 -13.97 16 5 H 0.08 2.47 6.12 -52.49 -0.32 2.15 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 8 Si 0.88 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.93 6.88 56.52 0.39 -6.54 16 10 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 11 H -0.27 -6.46 6.52 56.52 0.37 -6.09 16 12 C -0.06 -1.10 1.13 -155.66 -0.18 -1.27 16 13 C 0.01 0.20 3.54 -104.59 -0.37 -0.17 16 14 C -0.10 -1.73 9.28 -39.59 -0.37 -2.10 16 15 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 16 C -0.13 -1.90 10.04 -39.59 -0.40 -2.30 16 17 C -0.12 -1.94 9.83 -39.55 -0.39 -2.33 16 18 C -0.02 -0.40 5.33 -39.49 -0.21 -0.61 16 19 Cl -0.07 -1.23 24.90 -51.86 -1.29 -2.52 16 20 C -0.17 -2.94 8.12 -26.73 -0.22 -3.16 16 21 C -0.19 -3.03 9.44 -26.73 -0.25 -3.28 16 22 H 0.03 0.53 7.29 -51.93 -0.38 0.16 16 23 H 0.05 1.09 6.54 -51.93 -0.34 0.75 16 24 H 0.04 0.86 3.29 -51.93 -0.17 0.69 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.13 2.07 6.98 -52.48 -0.37 1.70 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.09 1.60 8.05 -51.93 -0.42 1.18 16 31 H 0.09 1.56 6.25 -51.93 -0.32 1.23 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.40 7.61 -51.93 -0.39 1.00 16 LS Contribution 274.75 15.07 4.14 4.14 Total: -1.00 -30.27 274.75 -7.50 -37.77 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.95 Total: 0.94 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -3.04 Total: -31.41 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.29 Total: -2.52 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.27 -7.50 -37.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.619 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds