Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47461 * 2 1 4 4 C 1.50700 * 109.46925 * 120.00513 * 2 1 3 5 5 H 1.07998 * 120.00159 * 120.00294 * 4 2 1 6 6 C 1.37880 * 119.99962 * 299.72047 * 4 2 1 7 7 N 1.31512 * 119.99713 * 180.27744 * 6 4 2 8 8 Si 1.86797 * 119.99879 * 0.28068 * 6 4 2 9 9 H 1.48500 * 109.47503 * 89.99701 * 8 6 4 10 10 H 1.48498 * 109.46884 * 209.99811 * 8 6 4 11 11 H 1.48509 * 109.47117 * 329.99466 * 8 6 4 12 12 C 1.53005 * 109.46855 * 240.00402 * 2 1 3 13 13 C 1.50697 * 115.54968 * 274.32843 * 12 2 1 14 14 C 1.38236 * 120.00866 * 76.38575 * 13 12 2 15 15 C 1.38221 * 120.01805 * 179.97438 * 14 13 12 16 16 C 1.38258 * 120.02376 * 0.04659 * 15 14 13 17 17 C 1.38193 * 120.01755 * 359.97438 * 16 15 14 18 18 C 1.38337 * 120.01064 * 256.11878 * 13 12 2 19 19 Cl 1.73603 * 120.00743 * 359.97071 * 18 13 12 20 20 C 1.53001 * 117.49684 * 128.62881 * 12 2 1 21 21 C 1.53000 * 117.50060 * 60.00245 * 12 2 1 22 22 H 1.09006 * 109.46916 * 59.99630 * 1 2 3 23 23 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47360 * 299.99643 * 1 2 3 25 25 H 0.97003 * 119.99807 * 180.02562 * 7 6 4 26 26 H 1.08007 * 119.98793 * 0.02562 * 14 13 12 27 27 H 1.07996 * 119.98829 * 180.02562 * 15 14 13 28 28 H 1.07998 * 119.99626 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.01406 * 180.02562 * 17 16 15 30 30 H 1.08998 * 117.50140 * 359.97438 * 20 12 2 31 31 H 1.08994 * 117.49949 * 145.01977 * 20 12 2 32 32 H 1.09000 * 117.49617 * 214.97436 * 21 12 2 33 33 H 1.09000 * 117.49863 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.7039 -0.2362 2.4827 7 7 2.1467 -0.8531 3.5564 8 14 0.6299 1.2825 2.6542 9 1 -0.7975 0.8763 2.7063 10 1 0.9858 2.0018 3.9036 11 1 0.8478 2.1770 1.4889 12 6 2.0399 -0.7212 -1.2494 13 6 2.1598 -2.2188 -1.1319 14 6 1.0276 -3.0098 -1.1913 15 6 1.1374 -4.3834 -1.0841 16 6 2.3794 -4.9672 -0.9165 17 6 3.5120 -4.1776 -0.8565 18 6 3.4033 -2.8028 -0.9702 19 17 4.8264 -1.8107 -0.9033 20 6 3.0741 0.0052 -2.1117 21 6 1.6356 -0.1494 -2.6097 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.9154 -0.5197 4.4375 26 1 0.0571 -2.5543 -1.3223 27 1 0.2526 -5.0009 -1.1309 28 1 2.4647 -6.0405 -0.8324 29 1 4.4822 -4.6337 -0.7260 30 1 3.3909 0.9970 -1.7892 31 1 3.8415 -0.6000 -2.5941 32 1 1.4568 -0.8564 -3.4198 33 1 1.0060 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = 29.443694 kcal Electronic energy + Delta-G solvation = -16571.985298 eV Core-core repulsion = 14009.709471 eV Total energy + Delta-G solvation = -2562.275827 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81688 -38.29969 -37.16105 -35.06235 -32.59695 -31.60216 -31.29323 -27.08141 -24.86062 -23.80138 -23.11777 -22.61899 -20.02498 -18.74434 -17.62944 -16.97715 -16.09607 -16.06335 -15.72427 -15.32405 -14.77515 -14.52229 -14.15713 -13.93013 -13.84731 -13.16690 -13.02519 -12.63863 -12.52988 -12.34701 -12.17957 -12.02369 -11.72834 -11.69387 -11.10325 -11.01607 -10.75339 -10.64050 -10.34011 -9.62484 -9.32246 -8.15740 -6.14785 0.40696 0.53094 1.31581 1.37585 1.43689 1.46403 2.39746 2.85717 3.02246 3.22986 3.77410 4.02360 4.06565 4.19599 4.31736 4.43929 4.57045 4.64890 4.69284 4.80085 4.86114 4.93090 5.01645 5.08158 5.12550 5.30210 5.38190 5.39685 5.49279 5.59339 5.65284 5.79228 5.82317 6.07860 6.51124 6.94552 7.47623 9.00664 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.009799 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.724017 B = 2856.778898 C = 2966.564416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 H 0.019 0.981 4 C -0.485 4.485 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.954 5.954 8 Si 0.939 3.061 9 H -0.271 1.271 10 H -0.309 1.309 11 H -0.251 1.251 12 C -0.080 4.080 13 C -0.013 4.013 14 C -0.114 4.114 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.128 4.128 18 C -0.047 4.047 19 Cl -0.078 7.078 20 C -0.171 4.171 21 C -0.156 4.156 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.024 0.976 25 H 0.258 0.742 26 H 0.135 0.865 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -4.282 -13.380 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.037 0.963 4 C -0.524 4.524 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.596 5.596 8 Si 0.768 3.232 9 H -0.198 1.198 10 H -0.238 1.238 11 H -0.175 1.175 12 C -0.080 4.080 13 C -0.014 4.014 14 C -0.132 4.132 15 C -0.136 4.136 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.073 4.073 19 Cl -0.049 7.049 20 C -0.208 4.208 21 C -0.193 4.193 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.153 0.847 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.607 -4.183 -13.212 13.951 hybrid contribution -0.007 0.847 1.031 1.334 sum -1.614 -3.336 -12.181 12.733 Atomic orbital electron populations 1.22111 0.97592 1.01139 0.99231 1.18639 0.92608 0.94413 0.91477 0.96266 1.21397 1.29295 1.12006 0.89663 0.92824 1.25744 0.97667 0.99397 0.95895 1.70055 1.48579 1.42684 0.98267 0.86010 0.79399 0.81124 0.76646 1.19797 1.23784 1.17514 1.20044 1.05328 0.90017 0.92601 1.18927 0.91558 0.94082 0.96787 1.21153 0.97841 0.94067 1.00175 1.21519 0.98785 0.94505 0.98817 1.21349 0.91502 1.01019 1.00154 1.21255 1.00921 0.91135 1.01331 1.21021 0.87946 0.92045 1.06332 1.98309 1.39151 1.70816 1.96618 1.23230 0.92863 1.01396 1.03268 1.23151 0.97653 1.02980 0.95496 0.91786 0.92723 0.95777 0.93261 0.84746 0.82909 0.82515 0.84307 0.89518 0.88384 0.87856 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.51 71.98 0.61 -5.16 16 2 C 0.05 2.13 1.96 -11.54 -0.02 2.10 16 3 H 0.02 0.91 6.95 -2.39 -0.02 0.89 16 4 C -0.49 -26.82 8.64 25.60 0.22 -26.60 16 5 H 0.05 3.25 6.12 -2.91 -0.02 3.23 16 6 C 0.01 0.48 5.45 84.66 0.46 0.94 16 7 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 8 Si 0.94 45.79 24.37 68.60 1.67 47.46 16 9 H -0.27 -12.65 6.88 99.48 0.68 -11.97 16 10 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 11 H -0.25 -11.37 6.52 99.48 0.65 -10.72 16 12 C -0.08 -3.01 1.13 -52.93 -0.06 -3.07 16 13 C -0.01 -0.48 3.54 -19.84 -0.07 -0.55 16 14 C -0.11 -3.81 9.28 22.27 0.21 -3.60 16 15 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 16 C -0.12 -3.38 10.04 22.26 0.22 -3.16 16 17 C -0.13 -4.13 9.83 22.29 0.22 -3.91 16 18 C -0.05 -1.77 5.33 22.33 0.12 -1.65 16 19 Cl -0.08 -2.93 24.90 -2.72 -0.07 -3.00 16 20 C -0.17 -5.75 8.12 30.60 0.25 -5.50 16 21 C -0.16 -4.61 9.44 30.60 0.29 -4.32 16 22 H 0.06 2.10 7.29 -2.38 -0.02 2.08 16 23 H 0.05 2.14 6.54 -2.39 -0.02 2.12 16 24 H 0.02 1.02 3.29 -2.39 -0.01 1.01 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.13 4.10 6.98 -2.91 -0.02 4.08 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.09 2.96 8.05 -2.39 -0.02 2.94 16 31 H 0.10 3.18 6.25 -2.39 -0.01 3.17 16 32 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 33 H 0.10 2.79 7.61 -2.39 -0.02 2.77 16 Total: -1.00 -66.23 274.75 5.61 -60.62 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.03 Total: 12.58 kcal Atomic # 6 Polarization: -60.27 SS G_CDS: 2.67 Total: -57.59 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.07 Total: -3.00 kcal Total: -66.23 5.61 -60.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.067 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds