Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46852 * 119.99700 * 3 2 1 6 6 H 1.48497 * 109.47068 * 239.99657 * 3 2 1 7 7 C 1.37878 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00208 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.38235 * 120.00237 * 269.72806 * 10 9 7 12 12 C 1.38230 * 119.99908 * 179.76876 * 11 10 9 13 13 C 1.38234 * 120.00442 * 0.49704 * 12 11 10 14 14 C 1.50702 * 120.00473 * 179.72744 * 13 12 11 15 15 F 1.39897 * 110.80064 * 52.84593 * 14 13 12 16 16 C 1.54810 * 110.90551 * 289.22301 * 14 13 12 17 17 C 1.54101 * 104.18848 * 220.91798 * 16 14 13 18 18 O 1.43749 * 107.29092 * 357.97147 * 17 16 14 19 19 C 1.44384 * 106.97701 * 26.51204 * 18 17 16 20 20 C 1.38234 * 119.99596 * 359.75376 * 13 12 11 21 21 C 1.38233 * 120.00224 * 0.02562 * 20 13 12 22 22 H 0.97003 * 120.00522 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46935 * 299.99592 * 9 7 2 24 24 H 1.09001 * 109.47312 * 59.99484 * 9 7 2 25 25 H 1.07998 * 119.99572 * 359.97438 * 11 10 9 26 26 H 1.08009 * 119.99726 * 180.22926 * 12 11 10 27 27 H 1.08996 * 110.49098 * 339.59261 * 16 14 13 28 28 H 1.09001 * 110.49220 * 102.10995 * 16 14 13 29 29 H 1.09002 * 109.87916 * 117.38996 * 17 16 14 30 30 H 1.08995 * 109.88115 * 238.39855 * 17 16 14 31 31 H 1.08999 * 110.61971 * 201.43816 * 19 18 17 32 32 H 1.09001 * 110.61448 * 78.43879 * 19 18 17 33 33 H 1.07999 * 119.99952 * 179.97438 * 20 13 12 34 34 H 1.08001 * 120.00415 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6751 -4.1737 -1.1966 12 6 3.5770 -5.2212 -1.1965 13 6 4.0263 -5.7465 0.0006 14 6 5.0049 -6.8926 0.0006 15 9 6.1199 -6.5938 -0.7897 16 6 4.3249 -8.1996 -0.4748 17 6 4.8884 -9.2823 0.4658 18 8 5.8295 -8.6396 1.3419 19 6 5.4315 -7.2556 1.4458 20 6 3.5775 -5.2208 1.1977 21 6 2.6791 -4.1703 1.1977 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8896 25 1 2.3205 -3.7664 -2.1318 26 1 3.9274 -5.6321 -2.1319 27 1 3.2426 -8.1273 -0.3681 28 1 4.5918 -8.4139 -1.5097 29 1 4.0803 -9.7234 1.0494 30 1 5.3893 -10.0554 -0.1169 31 1 6.2708 -6.6377 1.7650 32 1 4.5916 -7.1484 2.1323 33 1 3.9281 -5.6315 2.1330 34 1 2.3281 -3.7598 2.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = -77.872609 kcal Electronic energy + Delta-G solvation = -17782.518829 eV Core-core repulsion = 14787.253043 eV Total energy + Delta-G solvation = -2995.265786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.67425 -39.56005 -38.37855 -33.99466 -32.51039 -30.90564 -30.50968 -29.03605 -26.65228 -23.92077 -23.13751 -21.62584 -21.48509 -19.83961 -17.35995 -16.91338 -16.36554 -15.80768 -15.42417 -14.99734 -14.72139 -14.36286 -14.24226 -13.97686 -13.51684 -13.00469 -12.82701 -12.64939 -12.02750 -11.83616 -11.69328 -11.60024 -11.40670 -11.02666 -10.85456 -10.72536 -10.50898 -10.34875 -9.83669 -9.58253 -9.51906 -8.48545 -8.43914 -7.94761 -6.10238 -4.14662 1.79063 1.89931 3.29032 3.33204 3.36553 3.60177 4.06641 4.25304 4.30396 4.43759 4.52157 4.62884 4.87582 5.00038 5.24273 5.29491 5.40533 5.45437 5.50788 5.53231 5.66588 5.83636 5.86520 6.09197 6.11350 6.46578 6.47817 6.57152 6.87482 7.02883 7.05525 7.40287 7.56627 7.73415 7.85143 8.23810 8.90267 9.49732 10.99648 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044688 B = 0.004510 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.413621 B = 6206.927017 C = 6283.690687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.045 3.955 10 C -0.020 4.020 11 C -0.124 4.124 12 C -0.096 4.096 13 C -0.149 4.149 14 C 0.140 3.860 15 F -0.193 7.193 16 C -0.172 4.172 17 C 0.047 3.953 18 O -0.373 6.373 19 C 0.028 3.972 20 C -0.110 4.110 21 C -0.123 4.123 22 H 0.263 0.737 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.122 0.878 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 -15.522 0.770 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.009 3.991 10 C -0.021 4.021 11 C -0.142 4.142 12 C -0.115 4.115 13 C -0.150 4.150 14 C 0.121 3.879 15 F -0.174 7.174 16 C -0.210 4.210 17 C -0.030 4.030 18 O -0.292 6.292 19 C -0.049 4.049 20 C -0.128 4.128 21 C -0.141 4.141 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.140 0.860 26 H 0.132 0.868 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.944 -15.504 0.849 17.009 hybrid contribution 0.342 1.143 -0.270 1.223 sum 7.286 -14.361 0.579 16.114 Atomic orbital electron populations 1.69939 1.06054 1.27060 1.50177 1.25002 0.94887 0.99290 0.95012 0.86580 0.79539 0.82682 0.78811 1.21169 1.20105 1.20116 1.20994 0.93031 0.89772 1.51511 0.92476 1.18403 0.92574 0.89602 0.98564 1.20828 0.95093 0.94210 0.91920 1.21101 0.98114 0.96278 0.98660 1.20804 0.97194 0.96887 0.96570 1.19433 1.01507 0.99262 0.94777 1.20892 0.82632 0.93726 0.90632 1.92880 1.54188 1.94566 1.75737 1.23580 1.02454 0.93266 1.01673 1.23189 0.92738 0.95520 0.91554 1.88901 1.51355 1.21538 1.67416 1.24318 1.02016 0.83371 0.95145 1.20982 0.98241 0.97160 0.96387 1.21095 0.98155 0.96238 0.98656 0.92696 0.95135 0.95166 0.85997 0.86844 0.88464 0.89057 0.91765 0.89474 0.87554 0.89403 0.86333 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.17 9.09 -34.44 -0.31 -14.49 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.05 1.13 5.10 -29.04 -0.15 0.98 16 10 C -0.02 -0.43 5.07 -104.62 -0.53 -0.96 16 11 C -0.12 -2.33 9.70 -39.59 -0.38 -2.72 16 12 C -0.10 -1.59 9.51 -39.59 -0.38 -1.96 16 13 C -0.15 -2.30 4.92 -104.62 -0.51 -2.81 16 14 C 0.14 1.87 1.48 -89.76 -0.13 1.74 16 15 F -0.19 -3.00 16.85 2.25 0.04 -2.96 16 16 C -0.17 -1.84 6.32 -25.20 -0.16 -1.99 16 17 C 0.05 0.46 7.70 37.73 0.29 0.75 16 18 O -0.37 -4.72 11.52 -35.23 -0.41 -5.13 16 19 C 0.03 0.34 6.24 38.21 0.24 0.58 16 20 C -0.11 -1.70 9.08 -39.58 -0.36 -2.06 16 21 C -0.12 -2.27 9.70 -39.58 -0.38 -2.66 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 25 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 27 H 0.10 0.98 7.85 -51.93 -0.41 0.57 16 28 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 0.92 5.97 -51.93 -0.31 0.61 16 33 H 0.12 1.48 5.65 -52.49 -0.30 1.18 16 34 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -29.95 290.31 -7.50 -37.46 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.35 Total: -0.77 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -2.87 Total: -24.03 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.41 Total: -5.13 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.95 -7.50 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.416 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds