Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46852 * 119.99700 * 3 2 1 6 6 H 1.48497 * 109.47068 * 239.99657 * 3 2 1 7 7 C 1.37878 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00208 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.38235 * 120.00237 * 269.72806 * 10 9 7 12 12 C 1.38230 * 119.99908 * 179.76876 * 11 10 9 13 13 C 1.38234 * 120.00442 * 0.49704 * 12 11 10 14 14 C 1.50702 * 120.00473 * 179.72744 * 13 12 11 15 15 F 1.39897 * 110.80064 * 52.84593 * 14 13 12 16 16 C 1.54810 * 110.90551 * 289.22301 * 14 13 12 17 17 C 1.54101 * 104.18848 * 220.91798 * 16 14 13 18 18 O 1.43749 * 107.29092 * 357.97147 * 17 16 14 19 19 C 1.44384 * 106.97701 * 26.51204 * 18 17 16 20 20 C 1.38234 * 119.99596 * 359.75376 * 13 12 11 21 21 C 1.38233 * 120.00224 * 0.02562 * 20 13 12 22 22 H 0.97003 * 120.00522 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46935 * 299.99592 * 9 7 2 24 24 H 1.09001 * 109.47312 * 59.99484 * 9 7 2 25 25 H 1.07998 * 119.99572 * 359.97438 * 11 10 9 26 26 H 1.08009 * 119.99726 * 180.22926 * 12 11 10 27 27 H 1.08996 * 110.49098 * 339.59261 * 16 14 13 28 28 H 1.09001 * 110.49220 * 102.10995 * 16 14 13 29 29 H 1.09002 * 109.87916 * 117.38996 * 17 16 14 30 30 H 1.08995 * 109.88115 * 238.39855 * 17 16 14 31 31 H 1.08999 * 110.61971 * 201.43816 * 19 18 17 32 32 H 1.09001 * 110.61448 * 78.43879 * 19 18 17 33 33 H 1.07999 * 119.99952 * 179.97438 * 20 13 12 34 34 H 1.08001 * 120.00415 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6751 -4.1737 -1.1966 12 6 3.5770 -5.2212 -1.1965 13 6 4.0263 -5.7465 0.0006 14 6 5.0049 -6.8926 0.0006 15 9 6.1199 -6.5938 -0.7897 16 6 4.3249 -8.1996 -0.4748 17 6 4.8884 -9.2823 0.4658 18 8 5.8295 -8.6396 1.3419 19 6 5.4315 -7.2556 1.4458 20 6 3.5775 -5.2208 1.1977 21 6 2.6791 -4.1703 1.1977 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8896 25 1 2.3205 -3.7664 -2.1318 26 1 3.9274 -5.6321 -2.1319 27 1 3.2426 -8.1273 -0.3681 28 1 4.5918 -8.4139 -1.5097 29 1 4.0803 -9.7234 1.0494 30 1 5.3893 -10.0554 -0.1169 31 1 6.2708 -6.6377 1.7650 32 1 4.5916 -7.1484 2.1323 33 1 3.9281 -5.6315 2.1330 34 1 2.3281 -3.7598 2.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = -94.405207 kcal Electronic energy + Delta-G solvation = -17783.235736 eV Core-core repulsion = 14787.253043 eV Total energy + Delta-G solvation = -2995.982693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.79316 -40.69240 -39.53947 -35.72493 -34.11836 -32.08621 -31.91157 -30.26408 -28.23521 -25.49156 -24.37584 -22.94737 -22.68138 -21.14573 -18.59542 -18.39565 -17.84526 -16.84207 -16.74714 -16.41818 -15.93781 -15.71229 -15.59598 -15.06207 -14.77792 -14.53398 -14.27903 -13.85091 -13.60354 -13.32793 -13.24932 -12.70217 -12.61866 -12.56192 -12.43646 -12.08023 -12.01237 -11.72117 -11.53996 -11.36336 -10.63637 -10.61127 -9.81653 -9.46050 -8.22773 -6.36016 0.39250 0.51450 1.39304 1.41282 1.49744 2.37721 2.70948 2.84657 3.08619 3.20535 3.28291 3.59288 3.68007 3.98047 4.09301 4.11673 4.24223 4.33489 4.52004 4.61463 4.66688 4.75622 4.79059 4.86404 4.99133 5.04463 5.09139 5.31876 5.34454 5.51461 5.53654 5.71437 5.74788 6.01873 6.04521 6.18768 6.76341 7.32873 8.86538 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044688 B = 0.004510 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.413621 B = 6206.927017 C = 6283.690687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.279 1.279 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.054 3.946 10 C -0.053 4.053 11 C -0.135 4.135 12 C -0.094 4.094 13 C -0.137 4.137 14 C 0.131 3.869 15 F -0.206 7.206 16 C -0.167 4.167 17 C 0.044 3.956 18 O -0.391 6.391 19 C 0.028 3.972 20 C -0.098 4.098 21 C -0.132 4.132 22 H 0.266 0.734 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.116 0.884 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 -16.848 1.208 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.017 3.983 10 C -0.053 4.053 11 C -0.153 4.153 12 C -0.112 4.112 13 C -0.138 4.138 14 C 0.113 3.887 15 F -0.187 7.187 16 C -0.205 4.205 17 C -0.032 4.032 18 O -0.310 6.310 19 C -0.048 4.048 20 C -0.116 4.116 21 C -0.150 4.150 22 H 0.075 0.925 23 H 0.026 0.974 24 H 0.023 0.977 25 H 0.134 0.866 26 H 0.153 0.847 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.173 0.827 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.622 -16.845 1.286 18.967 hybrid contribution -0.159 1.446 -0.419 1.513 sum 8.463 -15.400 0.867 17.593 Atomic orbital electron populations 1.70059 1.07611 1.28089 1.51057 1.25887 0.95740 1.02997 0.94475 0.85525 0.78342 0.78224 0.79143 1.20456 1.19219 1.19455 1.21328 0.93034 0.91267 1.51339 0.92872 1.18136 0.92940 0.91073 0.96128 1.20525 0.96287 0.94507 0.93983 1.21086 0.99099 0.97360 0.97732 1.20994 0.96154 0.95868 0.98172 1.19743 1.00729 0.99086 0.94224 1.21096 0.81936 0.93790 0.91911 1.92857 1.54848 1.94724 1.76249 1.23594 1.02650 0.91860 1.02419 1.23385 0.93079 0.95314 0.91470 1.88888 1.52406 1.21680 1.68025 1.24379 1.02801 0.83399 0.94225 1.21282 0.96559 0.95573 0.98144 1.21155 0.98971 0.97255 0.97657 0.92483 0.97405 0.97729 0.86587 0.84745 0.87745 0.88228 0.89914 0.87984 0.87307 0.87710 0.82699 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.53 -30.15 9.09 25.60 0.23 -29.92 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.05 2.85 5.10 29.10 0.15 3.00 16 10 C -0.05 -2.27 5.07 -19.87 -0.10 -2.37 16 11 C -0.13 -5.14 9.70 22.27 0.22 -4.92 16 12 C -0.09 -2.95 9.51 22.27 0.21 -2.73 16 13 C -0.14 -3.88 4.92 -19.87 -0.10 -3.98 16 14 C 0.13 3.11 1.48 -10.24 -0.02 3.09 16 15 F -0.21 -5.88 16.85 44.97 0.76 -5.12 16 16 C -0.17 -3.01 6.32 31.58 0.20 -2.81 16 17 C 0.04 0.70 7.70 72.35 0.56 1.26 16 18 O -0.39 -8.61 11.52 -148.98 -1.72 -10.33 16 19 C 0.03 0.59 6.24 72.66 0.45 1.04 16 20 C -0.10 -2.81 9.08 22.27 0.20 -2.61 16 21 C -0.13 -4.83 9.70 22.27 0.22 -4.62 16 22 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 24 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 25 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 27 H 0.10 1.74 7.85 -2.39 -0.02 1.72 16 28 H 0.10 1.64 8.12 -2.39 -0.02 1.62 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.11 1.76 5.97 -2.39 -0.01 1.75 16 33 H 0.16 3.27 5.65 -2.91 -0.02 3.26 16 34 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -65.41 290.31 5.13 -60.28 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.09 Total: 8.94 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 2.69 Total: -44.68 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.28 Total: -55.10 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.72 Total: -10.33 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.76 Total: -5.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.41 5.13 -60.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.130 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds