Wall clock time and date at job start Mon Mar 30 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99591 * 2 1 4 4 H 1.48498 * 109.47238 * 179.72558 * 3 2 1 5 5 H 1.48498 * 109.47402 * 299.72944 * 3 2 1 6 6 H 1.48506 * 109.46858 * 59.72695 * 3 2 1 7 7 C 1.39942 * 120.00432 * 179.72833 * 2 1 3 8 8 H 1.07996 * 120.00006 * 207.12301 * 7 2 1 9 9 C 1.41399 * 119.99901 * 27.11814 * 7 2 1 10 10 C 1.40712 * 120.24150 * 204.85076 * 9 7 2 11 11 C 1.37624 * 119.74018 * 179.67927 * 10 9 7 12 12 C 1.38632 * 120.24667 * 0.62163 * 11 10 9 13 13 C 1.50700 * 119.74981 * 179.69872 * 12 11 10 14 14 F 1.39898 * 109.54694 * 224.80253 * 13 12 11 15 15 C 1.53172 * 109.54639 * 104.53256 * 13 12 11 16 16 C 1.53093 * 109.16680 * 183.15461 * 15 13 12 17 17 O 1.42904 * 109.41452 * 57.60840 * 16 15 13 18 18 C 1.42908 * 114.09508 * 298.84289 * 17 16 15 19 19 C 1.53090 * 109.41452 * 61.16108 * 18 17 16 20 20 C 1.38637 * 120.50732 * 359.67351 * 12 11 10 21 21 C 1.37623 * 120.24009 * 359.97438 * 20 12 11 22 22 H 0.97004 * 119.99615 * 184.17852 * 1 2 3 23 23 H 1.07996 * 120.12967 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87633 * 180.32098 * 11 10 9 25 25 H 1.09001 * 109.52293 * 303.05761 * 15 13 12 26 26 H 1.09000 * 109.52606 * 63.24728 * 15 13 12 27 27 H 1.09005 * 109.47737 * 297.62751 * 16 15 13 28 28 H 1.09002 * 109.49434 * 177.59802 * 16 15 13 29 29 H 1.09001 * 109.48348 * 301.17537 * 18 17 16 30 30 H 1.09001 * 109.48616 * 181.14541 * 18 17 16 31 31 H 1.08999 * 109.52214 * 182.48488 * 19 18 17 32 32 H 1.09002 * 109.52309 * 62.29195 * 19 18 17 33 33 H 1.07997 * 119.88067 * 180.02562 * 20 12 11 34 34 H 1.08006 * 120.12148 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3466 0.0067 5 1 1.8884 2.3937 -1.2158 6 1 1.8783 2.3994 1.2092 7 6 2.0081 -1.2119 0.0057 8 1 2.9989 -1.2612 0.4324 9 6 1.4177 -2.3718 -0.5470 10 6 1.8230 -3.6480 -0.1145 11 6 1.2368 -4.7699 -0.6547 12 6 0.2598 -4.6463 -1.6305 13 6 -0.3698 -5.8824 -2.2192 14 9 -0.4463 -5.7518 -3.6099 15 6 -1.7767 -6.0656 -1.6418 16 6 -2.3776 -7.3648 -2.1847 17 8 -1.5239 -8.4602 -1.8476 18 6 -0.2092 -8.3666 -2.3999 19 6 0.4788 -7.1077 -1.8655 20 6 -0.1429 -3.3941 -2.0685 21 6 0.4244 -2.2584 -1.5372 22 1 -0.4850 -0.8379 0.0612 23 1 2.5870 -3.7467 0.6423 24 1 1.5425 -5.7504 -0.3207 25 1 -1.7203 -6.1169 -0.5544 26 1 -2.4035 -5.2237 -1.9356 27 1 -2.4711 -7.2969 -3.2686 28 1 -3.3620 -7.5222 -1.7440 29 1 -0.2743 -8.3118 -3.4865 30 1 0.3686 -9.2456 -2.1142 31 1 1.4650 -7.0110 -2.3195 32 1 0.5807 -7.1800 -0.7827 33 1 -0.9052 -3.3095 -2.8288 34 1 0.1090 -1.2838 -1.8795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:21 Heat of formation + Delta-G solvation = -96.088341 kcal Electronic energy + Delta-G solvation = -18316.726935 eV Core-core repulsion = 15320.671256 eV Total energy + Delta-G solvation = -2996.055679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.23136 -38.88338 -37.70706 -34.53847 -32.66710 -31.22061 -29.76289 -29.04832 -25.93907 -23.73061 -23.56046 -21.21960 -20.65573 -19.43399 -17.98496 -16.61751 -15.93700 -15.66252 -15.15855 -14.92051 -14.56448 -14.26196 -14.11870 -13.48507 -13.15932 -12.51062 -12.36939 -12.23851 -12.12032 -11.93615 -11.71733 -11.31255 -11.13157 -11.03204 -10.82566 -10.48443 -10.20399 -10.17481 -9.69806 -9.60508 -9.23878 -9.02525 -7.77704 -7.63761 -7.29069 -4.53894 2.60688 2.79729 3.11031 3.20076 3.30293 3.91043 3.94719 4.41163 4.80030 4.83676 5.00587 5.06586 5.15784 5.29849 5.42705 5.60668 5.69742 5.72165 5.86437 5.91376 6.06528 6.14543 6.17281 6.23552 6.54301 6.68955 6.94662 7.04562 7.21099 7.30255 7.55405 7.67251 7.73074 7.82852 8.10395 8.21804 8.66361 8.79241 9.94781 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.050635 B = 0.005187 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.845998 B = 5396.420552 C = 5575.727140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.039 3.961 3 Si 1.070 2.930 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.101 3.899 10 C -0.231 4.231 11 C -0.065 4.065 12 C -0.261 4.261 13 C 0.186 3.814 14 F -0.215 7.215 15 C -0.167 4.167 16 C 0.059 3.941 17 O -0.385 6.385 18 C 0.059 3.941 19 C -0.171 4.171 20 C -0.057 4.057 21 C -0.223 4.223 22 H 0.300 0.700 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 -9.017 -2.627 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.184 4.184 3 Si 0.894 3.106 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.096 0.904 9 C 0.098 3.902 10 C -0.250 4.250 11 C -0.084 4.084 12 C -0.263 4.263 13 C 0.168 3.832 14 F -0.196 7.196 15 C -0.205 4.205 16 C -0.018 4.018 17 O -0.304 6.304 18 C -0.017 4.017 19 C -0.209 4.209 20 C -0.076 4.076 21 C -0.242 4.242 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.926 -7.518 -2.581 8.179 hybrid contribution 0.269 -1.344 -0.199 1.385 sum -1.657 -8.862 -2.780 9.435 Atomic orbital electron populations 1.70424 1.08308 1.34378 1.28234 1.27076 0.95638 1.04487 0.91196 0.83576 0.75568 0.73315 0.78176 1.20039 1.19859 1.20285 1.20664 1.04102 0.94258 1.35520 0.90424 1.17725 0.90308 0.92631 0.89533 1.20903 1.06420 0.92522 1.05187 1.20478 0.95236 0.96997 0.95661 1.19058 1.07110 0.92287 1.07819 1.19256 0.94704 0.94298 0.74939 1.92783 1.97445 1.97127 1.32248 1.22769 0.96431 0.98594 1.02709 1.22620 0.93650 0.86008 0.99495 1.87883 1.23102 1.44354 1.75053 1.22603 0.83620 0.97952 0.97569 1.22805 1.00161 0.94439 1.03481 1.20348 0.97620 0.92242 0.97389 1.21096 1.04504 0.96887 1.01750 0.88593 0.88725 0.88637 0.89467 0.90015 0.92926 0.88784 0.92905 0.88781 0.89844 0.89184 0.89147 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.72 12.38 55.55 0.69 -20.04 16 2 C 0.04 0.97 4.90 -17.34 -0.08 0.88 16 3 Si 1.07 21.29 30.01 -169.99 -5.10 16.18 16 4 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.52 -13.58 8.98 -37.74 -0.34 -13.92 16 8 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 9 C 0.10 2.64 5.30 -106.83 -0.57 2.08 16 10 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 11 C -0.07 -1.41 9.08 -39.66 -0.36 -1.77 16 12 C -0.26 -5.58 4.96 -104.33 -0.52 -6.10 16 13 C 0.19 3.32 1.02 -91.59 -0.09 3.23 16 14 F -0.22 -4.10 15.71 2.25 0.04 -4.07 16 15 C -0.17 -2.64 5.14 -26.59 -0.14 -2.77 16 16 C 0.06 0.80 6.72 37.21 0.25 1.05 16 17 O -0.39 -5.63 10.77 -35.23 -0.38 -6.01 16 18 C 0.06 0.79 6.72 37.20 0.25 1.04 16 19 C -0.17 -2.60 4.12 -26.59 -0.11 -2.71 16 20 C -0.06 -1.33 9.35 -39.66 -0.37 -1.70 16 21 C -0.22 -5.68 7.97 -38.87 -0.31 -5.99 16 22 H 0.30 8.08 6.72 -40.82 -0.27 7.80 16 23 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 24 H 0.10 1.77 5.85 -52.49 -0.31 1.47 16 25 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.70 7.93 -51.93 -0.41 0.29 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.70 7.93 -51.93 -0.41 0.28 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.34 6.63 -51.93 -0.34 1.00 16 33 H 0.09 1.96 7.99 -52.49 -0.42 1.54 16 34 H 0.11 2.77 6.53 -52.48 -0.34 2.42 16 LS Contribution 280.56 15.07 4.23 4.23 Total: -1.00 -27.45 280.56 -7.56 -35.01 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.26 Total: 7.31 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -2.77 Total: -32.61 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.69 Total: -20.04 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.38 Total: -6.01 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.10 Total: 16.18 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.45 -7.56 -35.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.081 kcal (2) G-P(sol) polarization free energy of solvation -27.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds