Wall clock time and date at job start Mon Mar 30 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99591 * 2 1 4 4 H 1.48498 * 109.47238 * 179.72558 * 3 2 1 5 5 H 1.48498 * 109.47402 * 299.72944 * 3 2 1 6 6 H 1.48506 * 109.46858 * 59.72695 * 3 2 1 7 7 C 1.39942 * 120.00432 * 179.72833 * 2 1 3 8 8 H 1.07996 * 120.00006 * 207.12301 * 7 2 1 9 9 C 1.41399 * 119.99901 * 27.11814 * 7 2 1 10 10 C 1.40712 * 120.24150 * 204.85076 * 9 7 2 11 11 C 1.37624 * 119.74018 * 179.67927 * 10 9 7 12 12 C 1.38632 * 120.24667 * 0.62163 * 11 10 9 13 13 C 1.50700 * 119.74981 * 179.69872 * 12 11 10 14 14 F 1.39898 * 109.54694 * 224.80253 * 13 12 11 15 15 C 1.53172 * 109.54639 * 104.53256 * 13 12 11 16 16 C 1.53093 * 109.16680 * 183.15461 * 15 13 12 17 17 O 1.42904 * 109.41452 * 57.60840 * 16 15 13 18 18 C 1.42908 * 114.09508 * 298.84289 * 17 16 15 19 19 C 1.53090 * 109.41452 * 61.16108 * 18 17 16 20 20 C 1.38637 * 120.50732 * 359.67351 * 12 11 10 21 21 C 1.37623 * 120.24009 * 359.97438 * 20 12 11 22 22 H 0.97004 * 119.99615 * 184.17852 * 1 2 3 23 23 H 1.07996 * 120.12967 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87633 * 180.32098 * 11 10 9 25 25 H 1.09001 * 109.52293 * 303.05761 * 15 13 12 26 26 H 1.09000 * 109.52606 * 63.24728 * 15 13 12 27 27 H 1.09005 * 109.47737 * 297.62751 * 16 15 13 28 28 H 1.09002 * 109.49434 * 177.59802 * 16 15 13 29 29 H 1.09001 * 109.48348 * 301.17537 * 18 17 16 30 30 H 1.09001 * 109.48616 * 181.14541 * 18 17 16 31 31 H 1.08999 * 109.52214 * 182.48488 * 19 18 17 32 32 H 1.09002 * 109.52309 * 62.29195 * 19 18 17 33 33 H 1.07997 * 119.88067 * 180.02562 * 20 12 11 34 34 H 1.08006 * 120.12148 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3466 0.0067 5 1 1.8884 2.3937 -1.2158 6 1 1.8783 2.3994 1.2092 7 6 2.0081 -1.2119 0.0057 8 1 2.9989 -1.2612 0.4324 9 6 1.4177 -2.3718 -0.5470 10 6 1.8230 -3.6480 -0.1145 11 6 1.2368 -4.7699 -0.6547 12 6 0.2598 -4.6463 -1.6305 13 6 -0.3698 -5.8824 -2.2192 14 9 -0.4463 -5.7518 -3.6099 15 6 -1.7767 -6.0656 -1.6418 16 6 -2.3776 -7.3648 -2.1847 17 8 -1.5239 -8.4602 -1.8476 18 6 -0.2092 -8.3666 -2.3999 19 6 0.4788 -7.1077 -1.8655 20 6 -0.1429 -3.3941 -2.0685 21 6 0.4244 -2.2584 -1.5372 22 1 -0.4850 -0.8379 0.0612 23 1 2.5870 -3.7467 0.6423 24 1 1.5425 -5.7504 -0.3207 25 1 -1.7203 -6.1169 -0.5544 26 1 -2.4035 -5.2237 -1.9356 27 1 -2.4711 -7.2969 -3.2686 28 1 -3.3620 -7.5222 -1.7440 29 1 -0.2743 -8.3118 -3.4865 30 1 0.3686 -9.2456 -2.1142 31 1 1.4650 -7.0110 -2.3195 32 1 0.5807 -7.1800 -0.7827 33 1 -0.9052 -3.3095 -2.8288 34 1 0.1090 -1.2838 -1.8795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261194311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:20 Heat of formation + Delta-G solvation = -110.161103 kcal Electronic energy + Delta-G solvation = -18317.337176 eV Core-core repulsion = 15320.671256 eV Total energy + Delta-G solvation = -2996.665920 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.71628 -40.22389 -39.35082 -36.27989 -34.20257 -32.42123 -31.55309 -30.78619 -27.63418 -25.10243 -24.94768 -22.92047 -22.36258 -20.88658 -19.86771 -18.00513 -17.13573 -17.03291 -16.63043 -16.30070 -16.14886 -15.83757 -15.56307 -15.12662 -14.87919 -14.24173 -13.96613 -13.61066 -13.48755 -13.39856 -13.34504 -12.97894 -12.71290 -12.37754 -12.26919 -11.99693 -11.72432 -11.61243 -11.29862 -11.20617 -10.88135 -10.52891 -9.67834 -9.52598 -9.24192 -6.52646 0.76745 0.88525 1.48301 1.60140 1.77557 2.28865 2.57552 2.87484 3.39210 3.53714 3.57418 3.66479 3.87852 3.92725 4.18705 4.27014 4.34684 4.44644 4.58317 4.64910 4.69593 4.73962 4.78348 4.92901 4.97556 5.06146 5.15498 5.28081 5.37511 5.65269 5.73199 5.76664 5.96798 6.15261 6.18043 6.31734 6.72020 6.87050 7.96570 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.050635 B = 0.005187 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.845998 B = 5396.420552 C = 5575.727140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.004 3.996 3 Si 1.121 2.879 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.072 3.928 10 C -0.245 4.245 11 C -0.062 4.062 12 C -0.249 4.249 13 C 0.179 3.821 14 F -0.222 7.222 15 C -0.166 4.166 16 C 0.063 3.937 17 O -0.393 6.393 18 C 0.061 3.939 19 C -0.169 4.169 20 C -0.067 4.067 21 C -0.241 4.241 22 H 0.284 0.716 23 H 0.102 0.898 24 H 0.133 0.867 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 -10.795 -2.838 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.212 4.212 3 Si 0.938 3.062 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.265 4.265 11 C -0.080 4.080 12 C -0.250 4.250 13 C 0.161 3.839 14 F -0.202 7.202 15 C -0.204 4.204 16 C -0.014 4.014 17 O -0.312 6.312 18 C -0.016 4.016 19 C -0.207 4.207 20 C -0.085 4.085 21 C -0.260 4.260 22 H 0.096 0.904 23 H 0.120 0.880 24 H 0.150 0.850 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.828 -9.325 -2.793 9.904 hybrid contribution 0.197 -0.976 -0.193 1.015 sum -1.631 -10.301 -2.986 10.849 Atomic orbital electron populations 1.70541 1.09030 1.33223 1.30775 1.28479 0.95630 1.07597 0.89540 0.82967 0.74938 0.69537 0.78800 1.18697 1.19217 1.18894 1.20846 1.04403 0.95470 1.37521 0.90776 1.18060 0.91030 0.93802 0.90142 1.21153 1.06969 0.92642 1.05691 1.20853 0.94315 0.97923 0.94909 1.19569 1.05741 0.93241 1.06456 1.19447 0.96380 0.93658 0.74411 1.92772 1.97553 1.97155 1.32765 1.22747 0.95111 1.00012 1.02524 1.22677 0.94402 0.84486 0.99800 1.87889 1.23599 1.44423 1.75249 1.22722 0.83269 0.97951 0.97636 1.22813 0.99985 0.93943 1.03944 1.20561 0.97783 0.92531 0.97627 1.21043 1.05482 0.96918 1.02600 0.90375 0.87991 0.84968 0.89639 0.90479 0.92586 0.86341 0.92690 0.85910 0.89498 0.88625 0.88093 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.21 12.38 21.83 0.27 -43.93 16 2 C 0.00 0.22 4.90 85.26 0.42 0.64 16 3 Si 1.12 43.25 30.01 68.60 2.06 45.31 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.55 -30.09 8.98 23.46 0.21 -29.88 16 8 H 0.07 3.92 7.97 -2.91 -0.02 3.90 16 9 C 0.07 3.90 5.30 -21.29 -0.11 3.78 16 10 C -0.25 -11.81 9.80 22.73 0.22 -11.59 16 11 C -0.06 -2.58 9.08 22.22 0.20 -2.38 16 12 C -0.25 -10.32 4.96 -19.67 -0.10 -10.42 16 13 C 0.18 5.98 1.02 -11.42 -0.01 5.97 16 14 F -0.22 -8.00 15.71 44.97 0.71 -7.29 16 15 C -0.17 -4.86 5.14 30.68 0.16 -4.70 16 16 C 0.06 1.51 6.72 72.01 0.48 2.00 16 17 O -0.39 -10.03 10.77 -148.98 -1.60 -11.64 16 18 C 0.06 1.38 6.72 72.01 0.48 1.87 16 19 C -0.17 -4.58 4.12 30.69 0.13 -4.45 16 20 C -0.07 -3.11 9.35 22.22 0.21 -2.90 16 21 C -0.24 -12.69 7.97 22.73 0.18 -12.51 16 22 H 0.28 16.08 6.72 -92.71 -0.62 15.46 16 23 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 24 H 0.13 4.49 5.85 -2.91 -0.02 4.47 16 25 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 1.33 7.93 -2.38 -0.02 1.31 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.25 7.93 -2.39 -0.02 1.23 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.49 6.63 -2.39 -0.02 2.47 16 33 H 0.10 4.39 7.99 -2.91 -0.02 4.37 16 34 H 0.09 4.78 6.53 -2.91 -0.02 4.76 16 Total: -1.00 -60.13 280.56 5.14 -54.99 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.24 Total: 27.13 kcal Atomic # 6 Polarization: -67.04 SS G_CDS: 2.47 Total: -64.57 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.27 Total: -43.93 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -1.60 Total: -11.64 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.71 Total: -7.29 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.06 Total: 45.31 kcal Total: -60.13 5.14 -54.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.173 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds