Wall clock time and date at job start Mon Mar 30 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48502 * 109.47213 * 269.99891 * 3 2 1 5 5 H 1.48498 * 109.47034 * 29.99855 * 3 2 1 6 6 H 1.48495 * 109.46850 * 149.99707 * 3 2 1 7 7 C 1.39944 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99623 * 197.84559 * 7 2 1 9 9 C 1.41390 * 120.00156 * 17.85441 * 7 2 1 10 10 C 1.40738 * 120.24733 * 24.37292 * 9 7 2 11 11 C 1.37594 * 119.74482 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25386 * 359.97438 * 11 10 9 13 13 C 1.38615 * 120.49799 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.87384 * 179.97438 * 13 12 11 15 15 C 1.53011 * 109.46701 * 90.00360 * 14 13 12 16 16 F 1.39899 * 110.83072 * 303.64729 * 15 14 13 17 17 C 1.54805 * 110.90710 * 179.97438 * 15 14 13 18 18 C 1.54097 * 104.30931 * 220.98777 * 17 15 14 19 19 O 1.43742 * 107.29096 * 357.90649 * 18 17 15 20 20 C 1.44383 * 106.97676 * 26.51479 * 19 18 17 21 21 C 1.37636 * 120.25021 * 0.25484 * 13 12 11 22 22 H 0.97000 * 119.99609 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.12580 * 0.04438 * 10 9 7 24 24 H 1.08005 * 119.87417 * 179.97438 * 11 10 9 25 25 H 1.07998 * 119.75095 * 179.97438 * 12 11 10 26 26 H 1.08991 * 109.47439 * 330.00833 * 14 13 12 27 27 H 1.09001 * 109.47418 * 209.99858 * 14 13 12 28 28 H 1.09008 * 110.48699 * 102.24736 * 17 15 14 29 29 H 1.08996 * 110.49087 * 339.73649 * 17 15 14 30 30 H 1.08999 * 109.87798 * 117.32926 * 18 17 15 31 31 H 1.08999 * 109.88204 * 238.33478 * 18 17 15 32 32 H 1.08989 * 110.61952 * 78.43908 * 20 19 18 33 33 H 1.09002 * 110.62015 * 201.28490 * 20 19 18 34 34 H 1.08001 * 120.13158 * 179.70662 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2872 9 6 1.3520 -2.4071 -0.3743 10 6 0.2204 -2.3627 -1.2099 11 6 -0.4102 -3.5320 -1.5679 12 6 0.0654 -4.7510 -1.1091 13 6 1.1791 -4.8067 -0.2857 14 6 1.6836 -6.1392 0.2053 15 6 2.7064 -6.6946 -0.7879 16 9 2.1538 -6.7910 -2.0695 17 6 3.2480 -8.0654 -0.3147 18 6 4.7562 -8.0070 -0.6257 19 8 5.0128 -6.7433 -1.2607 20 6 3.9940 -5.8276 -0.8046 21 6 1.8223 -3.6493 0.0899 22 1 -0.4849 0.8401 0.0004 23 1 -0.1514 -1.4144 -1.5690 24 1 -1.2791 -3.5003 -2.2087 25 1 -0.4361 -5.6638 -1.3948 26 1 0.8485 -6.8339 0.2934 27 1 2.1553 -6.0125 1.1798 28 1 2.7750 -8.8750 -0.8706 29 1 3.0837 -8.1918 0.7554 30 1 5.3284 -8.0800 0.2992 31 1 5.0285 -8.8228 -1.2952 32 1 4.2239 -5.4657 0.1974 33 1 3.8893 -4.9933 -1.4982 34 1 2.6870 -3.6947 0.7354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261198379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:25 Heat of formation + Delta-G solvation = -88.595942 kcal Electronic energy + Delta-G solvation = -18208.449948 eV Core-core repulsion = 15212.719163 eV Total energy + Delta-G solvation = -2995.730785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.25898 -38.93255 -37.59479 -34.18574 -32.84372 -30.62784 -29.84169 -28.43852 -25.74687 -25.03292 -22.68760 -20.77744 -20.66884 -19.84990 -17.11609 -16.59583 -15.95609 -15.50331 -15.30047 -14.85476 -14.65580 -14.06517 -13.93498 -13.61452 -13.33744 -12.64740 -12.53205 -12.11175 -11.72905 -11.58854 -11.56356 -11.35400 -11.22048 -11.12599 -10.71487 -10.51976 -10.47652 -10.31936 -9.61752 -9.50698 -9.37081 -9.13613 -7.47007 -7.28455 -6.75573 -4.35941 2.78721 2.91006 3.07603 3.10845 3.22827 3.93515 3.93997 4.33442 4.58350 4.67312 4.74666 4.88769 5.15144 5.28984 5.58518 5.60336 5.66740 5.75290 5.80093 5.88828 6.08024 6.19044 6.28835 6.41335 6.52686 6.86579 6.90752 7.05802 7.23086 7.37306 7.58482 7.88836 8.03890 8.10092 8.26884 8.63522 8.89252 8.97289 10.19502 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.005960 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.613057 B = 4697.125180 C = 5302.272424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.108 3.892 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.220 4.220 13 C -0.073 4.073 14 C -0.083 4.083 15 C 0.098 3.902 16 F -0.192 7.192 17 C -0.179 4.179 18 C 0.047 3.953 19 O -0.376 6.376 20 C 0.036 3.964 21 C -0.217 4.217 22 H 0.280 0.720 23 H 0.117 0.883 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -9.889 1.032 10.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.106 3.894 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.239 4.239 13 C -0.073 4.073 14 C -0.120 4.120 15 C 0.079 3.921 16 F -0.172 7.172 17 C -0.217 4.217 18 C -0.030 4.030 19 O -0.295 6.295 20 C -0.041 4.041 21 C -0.236 4.236 22 H 0.091 0.909 23 H 0.135 0.865 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.538 -9.682 0.877 10.729 hybrid contribution -0.017 0.706 0.115 0.715 sum 4.522 -8.977 0.992 10.100 Atomic orbital electron populations 1.69828 1.07576 1.29133 1.35559 1.25890 0.94694 1.01256 0.92246 0.86338 0.80494 0.80708 0.79327 1.19287 1.20373 1.18643 1.19550 0.98103 0.91244 1.40616 0.90498 1.17575 0.91219 0.91936 0.88661 1.21364 0.99146 0.96800 1.00605 1.20677 0.98723 0.93315 0.99869 1.20198 1.00646 0.96075 1.07002 1.19017 0.96719 0.92310 0.99265 1.20930 0.97538 0.96509 0.97053 1.22352 0.94264 0.95007 0.80434 1.92867 1.86937 1.96935 1.40459 1.23597 0.96744 0.97954 1.03415 1.23128 0.94396 0.87632 0.97855 1.88903 1.51182 1.20674 1.68726 1.24240 0.84655 0.93217 1.01999 1.20787 1.03674 0.92274 1.06914 0.90932 0.86491 0.89458 0.89639 0.90810 0.90119 0.89369 0.88970 0.92167 0.89839 0.90269 0.87085 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 10.95 55.55 0.61 -19.97 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.47 -12.24 9.05 -37.74 -0.34 -12.58 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 9 C 0.11 2.86 5.58 -106.82 -0.60 2.26 16 10 C -0.16 -4.18 8.70 -38.87 -0.34 -4.52 16 11 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.22 -4.95 9.43 -39.29 -0.37 -5.33 16 13 C -0.07 -1.56 4.67 -104.70 -0.49 -2.05 16 14 C -0.08 -1.37 4.61 -27.88 -0.13 -1.50 16 15 C 0.10 1.56 1.33 -88.48 -0.12 1.44 16 16 F -0.19 -3.62 16.43 2.25 0.04 -3.58 16 17 C -0.18 -2.13 6.41 -25.21 -0.16 -2.29 16 18 C 0.05 0.56 7.70 37.73 0.29 0.85 16 19 O -0.38 -5.99 11.52 -35.23 -0.41 -6.40 16 20 C 0.04 0.58 6.04 38.34 0.23 0.81 16 21 C -0.22 -5.09 8.76 -38.87 -0.34 -5.43 16 22 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 23 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 24 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 25 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 28 H 0.09 0.97 8.13 -51.92 -0.42 0.55 16 29 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.17 8.01 -51.94 -0.42 0.76 16 33 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -28.38 288.34 -7.79 -36.17 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.49 Total: 5.26 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.85 Total: -29.47 kcal Atomic # 7 Polarization: -20.58 SS G_CDS: 0.61 Total: -19.97 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.41 Total: -6.40 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.58 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.38 -7.79 -36.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.427 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds