Wall clock time and date at job start Mon Mar 30 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48502 * 109.47213 * 269.99891 * 3 2 1 5 5 H 1.48498 * 109.47034 * 29.99855 * 3 2 1 6 6 H 1.48495 * 109.46850 * 149.99707 * 3 2 1 7 7 C 1.39944 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99623 * 197.84559 * 7 2 1 9 9 C 1.41390 * 120.00156 * 17.85441 * 7 2 1 10 10 C 1.40738 * 120.24733 * 24.37292 * 9 7 2 11 11 C 1.37594 * 119.74482 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25386 * 359.97438 * 11 10 9 13 13 C 1.38615 * 120.49799 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.87384 * 179.97438 * 13 12 11 15 15 C 1.53011 * 109.46701 * 90.00360 * 14 13 12 16 16 F 1.39899 * 110.83072 * 303.64729 * 15 14 13 17 17 C 1.54805 * 110.90710 * 179.97438 * 15 14 13 18 18 C 1.54097 * 104.30931 * 220.98777 * 17 15 14 19 19 O 1.43742 * 107.29096 * 357.90649 * 18 17 15 20 20 C 1.44383 * 106.97676 * 26.51479 * 19 18 17 21 21 C 1.37636 * 120.25021 * 0.25484 * 13 12 11 22 22 H 0.97000 * 119.99609 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.12580 * 0.04438 * 10 9 7 24 24 H 1.08005 * 119.87417 * 179.97438 * 11 10 9 25 25 H 1.07998 * 119.75095 * 179.97438 * 12 11 10 26 26 H 1.08991 * 109.47439 * 330.00833 * 14 13 12 27 27 H 1.09001 * 109.47418 * 209.99858 * 14 13 12 28 28 H 1.09008 * 110.48699 * 102.24736 * 17 15 14 29 29 H 1.08996 * 110.49087 * 339.73649 * 17 15 14 30 30 H 1.08999 * 109.87798 * 117.32926 * 18 17 15 31 31 H 1.08999 * 109.88204 * 238.33478 * 18 17 15 32 32 H 1.08989 * 110.61952 * 78.43908 * 20 19 18 33 33 H 1.09002 * 110.62015 * 201.28490 * 20 19 18 34 34 H 1.08001 * 120.13158 * 179.70662 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2872 9 6 1.3520 -2.4071 -0.3743 10 6 0.2204 -2.3627 -1.2099 11 6 -0.4102 -3.5320 -1.5679 12 6 0.0654 -4.7510 -1.1091 13 6 1.1791 -4.8067 -0.2857 14 6 1.6836 -6.1392 0.2053 15 6 2.7064 -6.6946 -0.7879 16 9 2.1538 -6.7910 -2.0695 17 6 3.2480 -8.0654 -0.3147 18 6 4.7562 -8.0070 -0.6257 19 8 5.0128 -6.7433 -1.2607 20 6 3.9940 -5.8276 -0.8046 21 6 1.8223 -3.6493 0.0899 22 1 -0.4849 0.8401 0.0004 23 1 -0.1514 -1.4144 -1.5690 24 1 -1.2791 -3.5003 -2.2087 25 1 -0.4361 -5.6638 -1.3948 26 1 0.8485 -6.8339 0.2934 27 1 2.1553 -6.0125 1.1798 28 1 2.7750 -8.8750 -0.8706 29 1 3.0837 -8.1918 0.7554 30 1 5.3284 -8.0800 0.2992 31 1 5.0285 -8.8228 -1.2952 32 1 4.2239 -5.4657 0.1974 33 1 3.8893 -4.9933 -1.4982 34 1 2.6870 -3.6947 0.7354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261198379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:24 Heat of formation + Delta-G solvation = -103.759772 kcal Electronic energy + Delta-G solvation = -18209.107501 eV Core-core repulsion = 15212.719163 eV Total energy + Delta-G solvation = -2996.388338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.60785 -40.13725 -39.32208 -35.92194 -34.35700 -31.90594 -31.73231 -29.77812 -27.41375 -26.73216 -23.78188 -22.54501 -22.19547 -21.35829 -18.89199 -17.82217 -17.30491 -17.07814 -16.63265 -16.45020 -16.02900 -15.47957 -15.42981 -15.16633 -14.79434 -14.28252 -13.90113 -13.65093 -13.40479 -13.11066 -13.01632 -12.76306 -12.60339 -12.42108 -12.32456 -12.14081 -12.02772 -11.67411 -11.29152 -11.20126 -11.00082 -10.61977 -9.37023 -9.12706 -8.62686 -6.33385 0.99255 1.06951 1.37932 1.50748 1.52884 2.20744 2.70359 2.85913 3.24769 3.46955 3.65638 3.67216 3.93152 4.09929 4.17303 4.33527 4.44225 4.56014 4.69555 4.73143 4.79927 4.82614 4.86481 4.97175 5.05923 5.13734 5.17472 5.31360 5.52420 5.73124 5.79739 6.03317 6.12235 6.21469 6.38116 6.71730 6.95489 7.06247 8.34662 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.005960 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.613057 B = 4697.125180 C = 5302.272424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.076 3.924 10 C -0.192 4.192 11 C -0.115 4.115 12 C -0.226 4.226 13 C -0.067 4.067 14 C -0.079 4.079 15 C 0.089 3.911 16 F -0.213 7.213 17 C -0.166 4.166 18 C 0.038 3.962 19 O -0.400 6.400 20 C 0.035 3.965 21 C -0.224 4.224 22 H 0.287 0.713 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -11.566 2.086 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.074 3.926 10 C -0.212 4.212 11 C -0.133 4.133 12 C -0.245 4.245 13 C -0.067 4.067 14 C -0.116 4.116 15 C 0.071 3.929 16 F -0.194 7.194 17 C -0.204 4.204 18 C -0.038 4.038 19 O -0.319 6.319 20 C -0.042 4.042 21 C -0.243 4.243 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.375 -11.385 1.932 12.737 hybrid contribution -0.293 1.093 -0.232 1.155 sum 5.082 -10.292 1.700 11.603 Atomic orbital electron populations 1.69891 1.09036 1.30381 1.36140 1.26739 0.95439 1.04489 0.91278 0.85241 0.79197 0.76124 0.79377 1.19015 1.19268 1.18019 1.19810 0.98349 0.92469 1.42404 0.90547 1.17980 0.91869 0.93416 0.89350 1.21301 1.00517 0.96870 1.02465 1.20945 0.99111 0.93335 0.99926 1.20560 1.01045 0.96229 1.06692 1.19486 0.95476 0.94205 0.97516 1.20997 0.98610 0.93860 0.98149 1.22563 0.93523 0.97586 0.79255 1.92826 1.87263 1.97157 1.42137 1.23595 0.96152 0.95337 1.05311 1.23444 0.94916 0.86210 0.99212 1.88875 1.51135 1.22254 1.69686 1.24141 0.85506 0.92823 1.01696 1.21003 1.04126 0.92153 1.07042 0.90292 0.88485 0.87796 0.87464 0.88878 0.87659 0.88221 0.85992 0.89719 0.88309 0.88945 0.90330 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.21 10.95 21.83 0.24 -43.97 16 2 C 0.03 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 38.81 29.60 68.60 2.03 40.84 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.50 -27.20 9.05 23.46 0.21 -26.98 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.14 5.58 -21.29 -0.12 4.02 16 10 C -0.19 -10.45 8.70 22.73 0.20 -10.25 16 11 C -0.11 -5.56 10.02 22.22 0.22 -5.34 16 12 C -0.23 -10.00 9.43 22.46 0.21 -9.78 16 13 C -0.07 -2.78 4.67 -19.92 -0.09 -2.88 16 14 C -0.08 -2.37 4.61 29.85 0.14 -2.23 16 15 C 0.09 2.61 1.33 -9.41 -0.01 2.59 16 16 F -0.21 -7.74 16.43 44.97 0.74 -7.00 16 17 C -0.17 -3.26 6.41 31.58 0.20 -3.05 16 18 C 0.04 0.78 7.70 72.35 0.56 1.33 16 19 O -0.40 -12.09 11.52 -148.98 -1.72 -13.81 16 20 C 0.04 1.10 6.04 72.75 0.44 1.54 16 21 C -0.22 -10.55 8.76 22.73 0.20 -10.35 16 22 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 23 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 24 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 25 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 26 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 27 H 0.11 2.68 8.03 -2.39 -0.02 2.66 16 28 H 0.10 1.76 8.13 -2.38 -0.02 1.74 16 29 H 0.12 1.68 7.86 -2.39 -0.02 1.67 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 2.58 8.01 -2.39 -0.02 2.56 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -63.46 288.34 4.97 -58.48 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.09 Total: 24.62 kcal Atomic # 6 Polarization: -61.76 SS G_CDS: 2.59 Total: -59.16 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.24 Total: -43.97 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.72 Total: -13.81 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.74 Total: -7.00 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -63.46 4.97 -58.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.276 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds