Wall clock time and date at job start Mon Mar 30 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48494 * 109.46964 * 270.00025 * 3 2 1 5 5 H 1.48500 * 109.46916 * 29.99938 * 3 2 1 6 6 H 1.48493 * 109.46985 * 150.00069 * 3 2 1 7 7 C 1.39944 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00113 * 197.85624 * 7 2 1 9 9 C 1.41396 * 120.00164 * 17.86422 * 7 2 1 10 10 C 1.40741 * 120.23986 * 24.35964 * 9 7 2 11 11 C 1.37604 * 119.74062 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24780 * 359.72171 * 11 10 9 13 13 C 1.38608 * 120.50082 * 0.55905 * 12 11 10 14 14 C 1.50699 * 119.87411 * 179.71959 * 13 12 11 15 15 C 1.52998 * 109.47238 * 269.72414 * 14 13 12 16 16 F 1.39902 * 110.45576 * 64.29663 * 15 14 13 17 17 C 1.54511 * 110.51370 * 186.90289 * 15 14 13 18 18 C 1.54481 * 104.06135 * 118.64334 * 17 15 14 19 19 O 1.44428 * 104.80436 * 23.98215 * 18 17 15 20 20 C 1.44643 * 105.36626 * 319.56279 * 19 18 17 21 21 C 1.37638 * 120.25095 * 359.44210 * 13 12 11 22 22 H 0.96998 * 119.99972 * 359.97438 * 1 2 3 23 23 H 1.07991 * 120.12683 * 0.04536 * 10 9 7 24 24 H 1.08000 * 119.87129 * 180.02562 * 11 10 9 25 25 H 1.08003 * 119.74458 * 180.29493 * 12 11 10 26 26 H 1.08998 * 109.47396 * 29.72592 * 14 13 12 27 27 H 1.08998 * 109.47310 * 149.72489 * 14 13 12 28 28 H 1.08993 * 110.51434 * 237.28817 * 17 15 14 29 29 H 1.09005 * 110.50913 * 0.02562 * 17 15 14 30 30 H 1.08995 * 110.37116 * 142.81054 * 18 17 15 31 31 H 1.08998 * 110.37597 * 265.14963 * 18 17 15 32 32 H 1.08996 * 110.34389 * 281.59217 * 20 19 18 33 33 H 1.09006 * 110.50961 * 159.18572 * 20 19 18 34 34 H 1.07993 * 120.12887 * 180.25555 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3746 10 6 0.2204 -2.3625 -1.2101 11 6 -0.4102 -3.5319 -1.5683 12 6 0.0688 -4.7513 -1.1140 13 6 1.1790 -4.8067 -0.2860 14 6 1.6837 -6.1392 0.2046 15 6 1.0026 -6.4859 1.5300 16 9 -0.3736 -6.6541 1.3432 17 6 1.6258 -7.7606 2.1418 18 6 2.2049 -7.2843 3.4924 19 8 1.4392 -6.1064 3.8274 20 6 1.2759 -5.3885 2.5824 21 6 1.8256 -3.6497 0.0851 22 1 -0.4850 0.8400 0.0004 23 1 -0.1513 -1.4142 -1.5689 24 1 -1.2785 -3.5001 -2.2097 25 1 -0.4297 -5.6644 -1.4040 26 1 1.4555 -6.9083 -0.5333 27 1 2.7623 -6.0869 0.3532 28 1 0.8612 -8.5210 2.3009 29 1 2.4194 -8.1435 1.5001 30 1 2.0721 -8.0524 4.2542 31 1 3.2601 -7.0331 3.3854 32 1 2.1880 -4.8451 2.3359 33 1 0.4302 -4.7035 2.6446 34 1 2.6930 -3.6955 0.7270 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261198380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:27 Heat of formation + Delta-G solvation = -88.403588 kcal Electronic energy + Delta-G solvation = -18293.136398 eV Core-core repulsion = 15297.413954 eV Total energy + Delta-G solvation = -2995.722443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.25767 -38.95534 -37.57847 -34.17735 -32.80242 -30.56171 -29.85966 -28.27182 -25.76368 -25.02603 -22.83273 -20.76279 -20.61073 -19.81184 -17.10265 -16.52147 -15.89936 -15.50978 -15.28787 -14.81315 -14.59447 -14.08129 -13.90712 -13.59838 -13.35026 -12.62262 -12.50919 -12.04764 -11.76661 -11.53325 -11.47731 -11.33804 -11.17879 -11.07396 -10.79699 -10.56557 -10.48192 -10.22075 -9.68326 -9.52201 -9.34096 -9.15181 -7.48096 -7.29528 -6.76343 -4.36996 2.77756 2.89969 3.07049 3.10158 3.21746 3.92698 4.02444 4.40935 4.58679 4.72249 4.78570 4.97912 5.22507 5.29503 5.59032 5.62488 5.65319 5.79943 5.85563 5.93985 6.13849 6.17232 6.32769 6.43318 6.52292 6.85604 6.89894 7.04868 7.22046 7.36154 7.57229 7.87639 8.02649 8.09047 8.25730 8.62400 8.88200 8.96083 10.18698 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.006286 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.842742 B = 4453.094189 C = 5019.378521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.222 4.222 13 C -0.074 4.074 14 C -0.084 4.084 15 C 0.098 3.902 16 F -0.197 7.197 17 C -0.178 4.178 18 C 0.045 3.955 19 O -0.376 6.376 20 C 0.033 3.967 21 C -0.218 4.218 22 H 0.280 0.720 23 H 0.117 0.883 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -9.263 2.483 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.180 4.180 11 C -0.125 4.125 12 C -0.241 4.241 13 C -0.074 4.074 14 C -0.122 4.122 15 C 0.079 3.921 16 F -0.177 7.177 17 C -0.216 4.216 18 C -0.032 4.032 19 O -0.294 6.294 20 C -0.044 4.044 21 C -0.238 4.238 22 H 0.091 0.909 23 H 0.135 0.865 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.412 -9.037 2.714 10.034 hybrid contribution 0.201 0.710 -0.251 0.779 sum 3.613 -8.328 2.463 9.406 Atomic orbital electron populations 1.69826 1.07573 1.29188 1.35342 1.25894 0.94693 1.01269 0.92250 0.86336 0.80511 0.80728 0.79286 1.19311 1.20336 1.18642 1.19552 0.98107 0.91247 1.40605 0.90504 1.17573 0.91205 0.91918 0.88636 1.21369 0.99146 0.96801 1.00665 1.20684 0.98589 0.93303 0.99952 1.20212 1.00564 0.96174 1.07171 1.19046 0.96882 0.92408 0.99028 1.21013 0.99601 0.97310 0.94262 1.22215 0.77333 0.95277 0.97242 1.92865 1.32067 1.96330 1.96453 1.23618 1.02101 0.98038 0.97885 1.23374 0.95544 0.88472 0.95803 1.89179 1.74252 1.35987 1.30008 1.24188 1.04225 0.94043 0.81921 1.20794 1.03653 0.92299 1.07029 0.90884 0.86482 0.89442 0.89592 0.90816 0.90210 0.89490 0.89115 0.89026 0.91955 0.89620 0.87378 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.57 10.95 55.55 0.61 -19.96 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.62 29.60 -169.99 -5.03 13.58 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.47 -12.19 9.05 -37.74 -0.34 -12.53 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.11 2.86 5.58 -106.82 -0.60 2.26 16 10 C -0.16 -4.17 8.70 -38.87 -0.34 -4.51 16 11 C -0.11 -2.54 10.02 -39.66 -0.40 -2.93 16 12 C -0.22 -4.98 9.60 -39.29 -0.38 -5.36 16 13 C -0.07 -1.57 4.62 -104.70 -0.48 -2.05 16 14 C -0.08 -1.41 4.45 -27.88 -0.12 -1.53 16 15 C 0.10 1.61 1.40 -89.05 -0.13 1.48 16 16 F -0.20 -3.77 16.64 2.25 0.04 -3.73 16 17 C -0.18 -2.21 6.58 -25.16 -0.17 -2.37 16 18 C 0.05 0.55 7.64 37.93 0.29 0.84 16 19 O -0.38 -6.24 11.65 -35.23 -0.41 -6.65 16 20 C 0.03 0.57 5.93 37.94 0.23 0.80 16 21 C -0.22 -5.09 8.27 -38.87 -0.32 -5.41 16 22 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 23 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 24 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 25 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 26 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 28 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 29 H 0.09 0.91 7.73 -51.93 -0.40 0.51 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.47 6.27 -51.93 -0.33 1.15 16 33 H 0.11 2.12 8.12 -51.93 -0.42 1.70 16 34 H 0.09 1.98 7.11 -52.49 -0.37 1.60 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -28.22 285.36 -7.68 -35.90 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.34 Total: 6.06 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -2.84 Total: -29.50 kcal Atomic # 7 Polarization: -20.57 SS G_CDS: 0.61 Total: -19.96 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.41 Total: -6.65 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.22 -7.68 -35.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.505 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds