Wall clock time and date at job start Mon Mar 30 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48494 * 109.46964 * 270.00025 * 3 2 1 5 5 H 1.48500 * 109.46916 * 29.99938 * 3 2 1 6 6 H 1.48493 * 109.46985 * 150.00069 * 3 2 1 7 7 C 1.39944 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00113 * 197.85624 * 7 2 1 9 9 C 1.41396 * 120.00164 * 17.86422 * 7 2 1 10 10 C 1.40741 * 120.23986 * 24.35964 * 9 7 2 11 11 C 1.37604 * 119.74062 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24780 * 359.72171 * 11 10 9 13 13 C 1.38608 * 120.50082 * 0.55905 * 12 11 10 14 14 C 1.50699 * 119.87411 * 179.71959 * 13 12 11 15 15 C 1.52998 * 109.47238 * 269.72414 * 14 13 12 16 16 F 1.39902 * 110.45576 * 64.29663 * 15 14 13 17 17 C 1.54511 * 110.51370 * 186.90289 * 15 14 13 18 18 C 1.54481 * 104.06135 * 118.64334 * 17 15 14 19 19 O 1.44428 * 104.80436 * 23.98215 * 18 17 15 20 20 C 1.44643 * 105.36626 * 319.56279 * 19 18 17 21 21 C 1.37638 * 120.25095 * 359.44210 * 13 12 11 22 22 H 0.96998 * 119.99972 * 359.97438 * 1 2 3 23 23 H 1.07991 * 120.12683 * 0.04536 * 10 9 7 24 24 H 1.08000 * 119.87129 * 180.02562 * 11 10 9 25 25 H 1.08003 * 119.74458 * 180.29493 * 12 11 10 26 26 H 1.08998 * 109.47396 * 29.72592 * 14 13 12 27 27 H 1.08998 * 109.47310 * 149.72489 * 14 13 12 28 28 H 1.08993 * 110.51434 * 237.28817 * 17 15 14 29 29 H 1.09005 * 110.50913 * 0.02562 * 17 15 14 30 30 H 1.08995 * 110.37116 * 142.81054 * 18 17 15 31 31 H 1.08998 * 110.37597 * 265.14963 * 18 17 15 32 32 H 1.08996 * 110.34389 * 281.59217 * 20 19 18 33 33 H 1.09006 * 110.50961 * 159.18572 * 20 19 18 34 34 H 1.07993 * 120.12887 * 180.25555 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3746 10 6 0.2204 -2.3625 -1.2101 11 6 -0.4102 -3.5319 -1.5683 12 6 0.0688 -4.7513 -1.1140 13 6 1.1790 -4.8067 -0.2860 14 6 1.6837 -6.1392 0.2046 15 6 1.0026 -6.4859 1.5300 16 9 -0.3736 -6.6541 1.3432 17 6 1.6258 -7.7606 2.1418 18 6 2.2049 -7.2843 3.4924 19 8 1.4392 -6.1064 3.8274 20 6 1.2759 -5.3885 2.5824 21 6 1.8256 -3.6497 0.0851 22 1 -0.4850 0.8400 0.0004 23 1 -0.1513 -1.4142 -1.5689 24 1 -1.2785 -3.5001 -2.2097 25 1 -0.4297 -5.6644 -1.4040 26 1 1.4555 -6.9083 -0.5333 27 1 2.7623 -6.0869 0.3532 28 1 0.8612 -8.5210 2.3009 29 1 2.4194 -8.1435 1.5001 30 1 2.0721 -8.0524 4.2542 31 1 3.2601 -7.0331 3.3854 32 1 2.1880 -4.8451 2.3359 33 1 0.4302 -4.7035 2.6446 34 1 2.6930 -3.6955 0.7270 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261198380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:26 Heat of formation + Delta-G solvation = -103.589900 kcal Electronic energy + Delta-G solvation = -18293.794926 eV Core-core repulsion = 15297.413954 eV Total energy + Delta-G solvation = -2996.380971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.64872 -40.23502 -39.29443 -35.92401 -34.34104 -31.87309 -31.74785 -29.66072 -27.44561 -26.73816 -23.96516 -22.56290 -22.18321 -21.30027 -18.89545 -17.77640 -17.30718 -17.09552 -16.68740 -16.48188 -15.95591 -15.53397 -15.42538 -15.10081 -14.87483 -14.28624 -13.95182 -13.54714 -13.48430 -13.10442 -12.80392 -12.74730 -12.71111 -12.47775 -12.36313 -12.17486 -11.89606 -11.72004 -11.30763 -11.21014 -11.02228 -10.72848 -9.37595 -9.13238 -8.63217 -6.34047 0.98623 1.06057 1.37691 1.50844 1.52552 2.20433 2.70722 2.88775 3.26316 3.47479 3.62753 3.66141 3.93583 4.09505 4.18418 4.32112 4.44004 4.53333 4.70499 4.72631 4.79150 4.81541 4.85852 4.97530 5.05736 5.12594 5.14982 5.30949 5.51592 5.71608 5.72553 6.02646 6.11442 6.20941 6.37445 6.71114 6.94904 7.05592 8.34177 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.006286 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.842742 B = 4453.094189 C = 5019.378521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.077 3.923 10 C -0.192 4.192 11 C -0.114 4.114 12 C -0.228 4.228 13 C -0.067 4.067 14 C -0.080 4.080 15 C 0.091 3.909 16 F -0.216 7.216 17 C -0.166 4.166 18 C 0.037 3.963 19 O -0.398 6.398 20 C 0.034 3.966 21 C -0.224 4.224 22 H 0.286 0.714 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 -11.040 2.793 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.096 0.904 9 C 0.075 3.925 10 C -0.212 4.212 11 C -0.132 4.132 12 C -0.247 4.247 13 C -0.067 4.067 14 C -0.117 4.117 15 C 0.072 3.928 16 F -0.197 7.197 17 C -0.203 4.203 18 C -0.039 4.039 19 O -0.318 6.318 20 C -0.043 4.043 21 C -0.243 4.243 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.915 -10.839 3.025 12.280 hybrid contribution -0.302 1.130 -0.320 1.213 sum 4.613 -9.709 2.704 11.084 Atomic orbital electron populations 1.69897 1.09119 1.30409 1.36130 1.26766 0.95419 1.04600 0.91257 0.85225 0.79150 0.76009 0.79467 1.18741 1.19505 1.17974 1.19824 0.98401 0.92441 1.42314 0.90435 1.17975 0.91850 0.93384 0.89313 1.21310 1.00491 0.96870 1.02488 1.20950 0.98955 0.93312 1.00024 1.20570 1.00875 0.96334 1.06900 1.19499 0.95685 0.94258 0.97299 1.21090 1.01076 0.94792 0.94781 1.22422 0.76461 0.97163 0.96733 1.92829 1.33857 1.96486 1.96517 1.23613 1.02941 0.95845 0.97946 1.23736 0.96070 0.87448 0.96625 1.89154 1.75310 1.37633 1.29682 1.24006 1.02727 0.94364 0.83216 1.21000 1.04167 0.92156 1.06992 0.90305 0.88460 0.87780 0.87457 0.88722 0.87521 0.88699 0.85841 0.86516 0.89960 0.89645 0.90971 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.60 10.95 21.83 0.24 -44.36 16 2 C 0.03 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 38.72 29.60 68.60 2.03 40.75 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.50 -27.05 9.05 23.46 0.21 -26.84 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 9 C 0.08 4.16 5.58 -21.29 -0.12 4.04 16 10 C -0.19 -10.40 8.70 22.73 0.20 -10.20 16 11 C -0.11 -5.50 10.02 22.22 0.22 -5.28 16 12 C -0.23 -10.02 9.60 22.46 0.22 -9.81 16 13 C -0.07 -2.80 4.62 -19.92 -0.09 -2.89 16 14 C -0.08 -2.42 4.45 29.85 0.13 -2.29 16 15 C 0.09 2.75 1.40 -9.78 -0.01 2.74 16 16 F -0.22 -7.97 16.64 44.97 0.75 -7.22 16 17 C -0.17 -3.41 6.58 31.61 0.21 -3.20 16 18 C 0.04 0.77 7.64 72.49 0.55 1.33 16 19 O -0.40 -12.67 11.65 -148.98 -1.74 -14.40 16 20 C 0.03 1.17 5.93 72.49 0.43 1.60 16 21 C -0.22 -10.49 8.27 22.73 0.19 -10.30 16 22 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 23 H 0.10 5.54 6.16 -2.92 -0.02 5.52 16 24 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 25 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 26 H 0.09 2.52 8.08 -2.39 -0.02 2.50 16 27 H 0.11 2.68 8.08 -2.39 -0.02 2.66 16 28 H 0.09 1.85 8.06 -2.39 -0.02 1.83 16 29 H 0.12 1.76 7.73 -2.38 -0.02 1.74 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.87 6.27 -2.39 -0.01 2.86 16 33 H 0.07 2.94 8.12 -2.38 -0.02 2.92 16 34 H 0.10 4.46 7.11 -2.91 -0.02 4.44 16 Total: -1.00 -63.45 285.36 4.95 -58.50 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 1.09 Total: 25.66 kcal Atomic # 6 Polarization: -61.49 SS G_CDS: 2.57 Total: -58.92 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.24 Total: -44.36 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.74 Total: -14.40 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.75 Total: -7.22 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -63.45 4.95 -58.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.091 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds