Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47224 * 240.00214 * 3 2 1 5 5 H 1.48503 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47134 * 119.99813 * 3 2 1 7 7 C 1.39953 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99442 * 197.86546 * 7 2 1 9 9 C 1.41391 * 120.00193 * 17.85698 * 7 2 1 10 10 C 1.40714 * 120.24725 * 204.39082 * 9 7 2 11 11 C 1.37622 * 119.74332 * 180.25553 * 10 9 7 12 12 C 1.38630 * 120.24548 * 359.42460 * 11 10 9 13 13 C 1.50701 * 119.74546 * 180.30119 * 12 11 10 14 14 C 1.52996 * 109.47485 * 270.29968 * 13 12 11 15 15 F 1.39897 * 110.75323 * 67.01783 * 14 13 12 16 16 C 1.55307 * 110.85124 * 190.71701 * 14 13 12 17 17 C 1.54944 * 100.94431 * 152.32116 * 16 14 13 18 18 O 1.43646 * 105.13725 * 323.55233 * 17 16 14 19 19 C 1.43243 * 109.97169 * 24.43104 * 18 17 16 20 20 C 1.38633 * 120.50691 * 0.59963 * 12 11 10 21 21 C 1.37625 * 120.24486 * 359.68507 * 20 12 11 22 22 H 0.96994 * 120.00241 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.12583 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.86938 * 179.72549 * 11 10 9 25 25 H 1.09003 * 109.47419 * 30.29818 * 13 12 11 26 26 H 1.09002 * 109.47274 * 150.29773 * 13 12 11 27 27 H 1.09000 * 111.12386 * 270.24374 * 16 14 13 28 28 H 1.09001 * 111.12449 * 34.39905 * 16 14 13 29 29 H 1.08996 * 110.31001 * 204.64277 * 17 16 14 30 30 H 1.08998 * 110.39601 * 82.51328 * 17 16 14 31 31 H 1.09003 * 109.83306 * 238.77899 * 19 18 17 32 32 H 1.08995 * 109.90950 * 117.84067 * 19 18 17 33 33 H 1.08001 * 119.87650 * 179.69806 * 20 12 11 34 34 H 1.07999 * 120.12442 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2345 0.2864 9 6 1.3522 -2.4069 -0.3765 10 6 1.8259 -3.6500 0.0822 11 6 1.1827 -4.8069 -0.2945 12 6 0.0653 -4.7499 -1.1129 13 6 -0.6343 -6.0233 -1.5130 14 6 -0.0191 -6.5582 -2.8077 15 9 1.2993 -6.9749 -2.5949 16 6 -0.8799 -7.7103 -3.3940 17 6 -0.5538 -7.5824 -4.9033 18 8 -0.4323 -6.1712 -5.1425 19 6 -0.0860 -5.4969 -3.9271 20 6 -0.4099 -3.5308 -1.5712 21 6 0.2208 -2.3616 -1.2120 22 1 -0.4850 0.8400 0.0004 23 1 2.6934 -3.6962 0.7237 24 1 1.5472 -5.7624 0.0528 25 1 -0.5190 -6.7650 -0.7225 26 1 -1.6939 -5.8218 -1.6703 27 1 -0.5610 -8.6767 -3.0037 28 1 -1.9405 -7.5433 -3.2056 29 1 -1.3637 -7.9991 -5.5020 30 1 0.3844 -8.0873 -5.1334 31 1 -0.8463 -4.7537 -3.6869 32 1 0.8841 -5.0119 -4.0351 33 1 -1.2785 -3.4986 -2.2123 34 1 -0.1513 -1.4129 -1.5698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -103.454221 kcal Electronic energy + Delta-G solvation = -18148.031346 eV Core-core repulsion = 15151.656258 eV Total energy + Delta-G solvation = -2996.375088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.67172 -40.18726 -39.31129 -36.01662 -34.23432 -32.04639 -31.18326 -30.28007 -28.23890 -25.83314 -23.63432 -22.86803 -22.15641 -21.20528 -19.23442 -18.00386 -17.42445 -17.19249 -16.41978 -16.18065 -15.83096 -15.56462 -15.39323 -15.23814 -14.73966 -14.37300 -13.95851 -13.69991 -13.39562 -13.19003 -13.08495 -12.73417 -12.71691 -12.50081 -12.31738 -12.25415 -11.77748 -11.69100 -11.29180 -11.17762 -10.97976 -10.59879 -9.35910 -9.19812 -8.64971 -6.34353 0.93718 1.14079 1.36827 1.47531 1.52278 2.19766 2.66888 2.81874 3.18501 3.45629 3.62782 3.72886 3.88098 4.11070 4.22223 4.36231 4.42331 4.57664 4.63879 4.70764 4.79720 4.88344 4.90845 4.95924 5.05309 5.13716 5.20263 5.38149 5.46852 5.70104 5.89374 5.97391 6.09531 6.21645 6.39183 6.69488 6.93545 7.03047 8.31777 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.040118 B = 0.005253 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.774096 B = 5329.103145 C = 5563.254947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.247 4.247 11 C -0.082 4.082 12 C -0.210 4.210 13 C -0.062 4.062 14 C 0.087 3.913 15 F -0.213 7.213 16 C -0.163 4.163 17 C 0.041 3.959 18 O -0.402 6.402 19 C 0.038 3.962 20 C -0.094 4.094 21 C -0.190 4.190 22 H 0.289 0.711 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -10.759 -5.648 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.076 3.924 10 C -0.266 4.266 11 C -0.100 4.100 12 C -0.211 4.211 13 C -0.099 4.099 14 C 0.069 3.931 15 F -0.194 7.194 16 C -0.200 4.200 17 C -0.035 4.035 18 O -0.322 6.322 19 C -0.039 4.039 20 C -0.112 4.112 21 C -0.210 4.210 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.127 0.873 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.348 -10.521 -5.819 12.785 hybrid contribution 0.844 0.946 0.473 1.353 sum -3.504 -9.575 -5.346 11.513 Atomic orbital electron populations 1.69854 1.08916 1.30629 1.35554 1.26720 0.95503 1.04371 0.91175 0.85283 0.78863 0.75774 0.79981 1.18679 1.18913 1.18426 1.19819 0.98298 0.92772 1.42509 0.91021 1.17978 0.92121 0.92912 0.89402 1.21163 1.04473 0.93397 1.07616 1.20686 0.95374 0.96514 0.97442 1.19321 1.00527 0.94120 1.07110 1.20733 0.99709 0.94665 0.94793 1.22576 0.78399 0.95190 0.96948 1.92821 1.39010 1.91379 1.96177 1.23893 1.02019 0.98863 0.95271 1.23667 1.02447 0.81301 0.96074 1.88391 1.91344 1.20628 1.31800 1.23725 1.01484 0.95312 0.83374 1.20815 0.98871 0.92233 0.99321 1.21298 1.00135 0.97329 1.02194 0.90068 0.89057 0.87293 0.89594 0.88105 0.86980 0.86298 0.86501 0.92016 0.88920 0.92772 0.86877 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.47 10.95 21.83 0.24 -43.23 16 2 C 0.04 1.91 5.14 85.26 0.44 2.35 16 3 Si 0.98 38.85 29.60 68.60 2.03 40.88 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 7 C -0.50 -28.01 9.05 23.46 0.21 -27.80 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 9 C 0.08 4.32 5.58 -21.29 -0.12 4.20 16 10 C -0.25 -12.56 9.80 22.73 0.22 -12.33 16 11 C -0.08 -3.64 9.64 22.22 0.21 -3.43 16 12 C -0.21 -8.50 4.66 -19.68 -0.09 -8.59 16 13 C -0.06 -1.82 4.72 29.85 0.14 -1.68 16 14 C 0.09 2.49 1.23 -9.53 -0.01 2.48 16 15 F -0.21 -7.27 16.86 44.97 0.76 -6.51 16 16 C -0.16 -3.14 6.43 32.05 0.21 -2.93 16 17 C 0.04 0.85 7.78 72.65 0.56 1.42 16 18 O -0.40 -11.95 11.36 -148.98 -1.69 -13.64 16 19 C 0.04 1.21 6.26 72.45 0.45 1.66 16 20 C -0.09 -4.17 8.39 22.22 0.19 -3.99 16 21 C -0.19 -10.01 8.70 22.73 0.20 -9.82 16 22 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 23 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 24 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 25 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 26 H 0.10 2.52 7.96 -2.39 -0.02 2.50 16 27 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.12 1.78 7.95 -2.39 -0.02 1.76 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 2.92 5.86 -2.39 -0.01 2.90 16 32 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 33 H 0.11 4.33 7.06 -2.91 -0.02 4.31 16 34 H 0.10 5.56 6.15 -2.91 -0.02 5.54 16 Total: -1.00 -62.41 285.37 5.05 -57.36 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.09 Total: 23.60 kcal Atomic # 6 Polarization: -61.08 SS G_CDS: 2.62 Total: -58.46 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.24 Total: -43.23 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.69 Total: -13.64 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.76 Total: -6.51 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -62.41 5.05 -57.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.093 kcal (2) G-P(sol) polarization free energy of solvation -62.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds